Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12433 LG3 16793376 16798366 PREDICTED: auxin response factor 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   abaxial cell fate specification, vegetative phase change, regulation of transcription, DNA-templated, abaxial cell fate specification, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 16793939 intron_variant
C/G 16794076 intron_variant
G/A 16794082 intron_variant
G/T 16794130 missense_variant p.Gly139Cys
G/T 16794162 missense_variant p.Glu149Asp
A/C 16794387 downstream_gene_variant
C/A 16794393 downstream_gene_variant
G/A 16794501 missense_variant&splice_region_variant p.Asp194Asn
A/T 16794507 stop_gained p.Lys196*
A/T 16794516 missense_variant p.Arg199Trp
T/G 16794590 splice_region_variant&intron_variant
G/A 16794592 splice_region_variant&intron_variant
T/A 16795074 downstream_gene_variant
G/T 16795075 downstream_gene_variant
T/C 16795293 downstream_gene_variant
A/T 16795517 missense_variant p.His264Leu
C/A 16795518 missense_variant p.His264Gln
C/T 16795519 stop_gained p.Gln265*
T/A 16796280 downstream_gene_variant
C/A 16796331 downstream_gene_variant
T/A 16796415 downstream_gene_variant
T/A 16796850 downstream_gene_variant
T/C 16796851 downstream_gene_variant
G/T 16796855 downstream_gene_variant
G/A 16797244 missense_variant p.Glu478Lys
A/G 16797415 missense_variant p.Thr535Ala
G/A 16797424 missense_variant p.Val538Ile
G/A 16797618 synonymous_variant p.Gly602Gly
T/A 16797624 missense_variant p.Ser604Arg
A/G 16797625 missense_variant p.Lys605Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12433.1
MEFDLNHEVTEVEKNAFGDRECEKDAGVSCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPSYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELEGMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRESHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCNSGTMIATSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSQLITARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDTVTKPLGFEMSSPSHPNLGSAEVRKATSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKIDLNLGTWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAVQPSLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGQPELPNEHKLQDNLSAAAALGAANMGVPNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFGMEGLLKDPNNGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGIISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV*


CDS Sequence:
>Vu_12433.1
ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCGGTGATAGGGAATGTGAGAAAGATGCTGGTGTCAGTTGCTGGTCCTCTTCCACTTCTTCATCTTCCAGTTCCTCTTCGGCTCGTGTGTCCTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCGGAGTTGGAAGGGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACCCATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCTTCACAAGAGCTCGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCGAATGTCCTGTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGAAAGTCATGCAGACTTTGTTGTTCCATATCAAAGATATGTCAAAAGCATCAAGAATCCAGTGAGCATTGGAGCAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAATAGTGGCACAATGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCTTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCAACTCATCACTGCACGAGGCAGTGGGTTGGTGGGTTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTGTGTCACTCTACTACGGATGTGACACGGTAACCAAGCCACTAGGTTTTGAGATGAGTTCTCCTAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGCTACCTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCTCTGACAGGAAAGATTGATTTGAATCTTGGTACCTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCAACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGTTCAACCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAAAGAGAAAATGTCCCATTTAATAAACCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGACAACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCATTAGGGGCTGCAAATATGGGGGTTCCTAATGACAATAACGTCCAGGGAAAAGTAAATGCCTGCAAACTATTCGGGTTTTCTTTATCTGGGGAAACCACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGATTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTAACAACGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAAATGACAATTGGGATCATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCGAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA


Promoter Sequence:
>Vu_12433::LG3:16791376-16793376(+)
TTTAATTTAATATATAATTTTTATTTAATTTAATTAAAGTTTTTTAGTTTTTAAAAATATCTAATTAAGTATTTTTTATGTTATATTAATATTAATTTTTTATTAAAATTTTTACATTAAATCACTTCACTTAAAAAATAAAATTAATTTAAACATATAGACTTTTAAGATAAAATAGTTTGATATATAAATTTTAACGAAAATTTAATATAAATCCAAAAAAATCAAATTAAATTATTTAAAAAATTAAAAGACTAAATTGAACCAAATAAAATATTAAAAATATAATTTAAATTTTTAAAAAATTAGAGGAAAAGAAAGAGTTTTAGCCTATTTTAATTAATAACTTTTTTAGTATTGAGTAATAAATAGTAAGTATTTTTTATTAATAGTTCATAAAAAAATATTTTATTCTTTTTAAAATATAAAAAATTAAGATTTAAATTTTTTCTAAAAGTGCATCTTTTCTTAAAAGGATTGTCCTTTTCTTTGTTTTAAATTACTAGAAAATAGACATGTCTGAAAACAATGAGAGAAAGCAAAACCAGAGGAAACAATCGACAGAAAAAATAAGGTTAATTTCAAAATCAGAGAAAACATAAAACTAAAAGAATCTAAAAGTAAATAACAATTTCTCCAATTTTATTTAATCTGATTTTTAGGTTTGGTTGAAAGAGATAGATTACAGAGGTGGTTGTAGAAATATAAAGAGGCAGTGATGAGTTAAGGTTTTTGTCTGTGGGTTTGTGAGTAGAGTGAAGAAGTGAGATGTGTTGTAAAGTAGTGCAATGGCTAGTGGAAAAAAAGGTTGTGAGTACTTTGACAACTAATCCAAGTCTACAGTACATTTTTCACAGTTCCATAGAGAGACAGAAACCCTCTCACTTTCCTTTTATTAATGAAACCCTGTAGCTATACCTCTATTTGTCGGATATTCGTGTTACAGGCCTCCAAATCATATCAAATCAACTGAAAAACCATTACTAACCGATTAATGCATATTTTATATACACCTAATAGTGAGTATATTTACCTTGGTATTTCTGTTACTGTTACAGTTAATCATGATATACCTTGAAACTCATTAACCTATATTGTGTGTTGAGTTGTCAGATTGTGTTTTTCTTGGAATTGTCTCTTTTTGGAGATAAAAAGAGAGTGAGAGAGAGAAAGAAACCTTGTTAATGATTGTTTGTTTATTTATCTTGTACATTAACTTATGTTGTCTAGGGTGAGGGCCTGAATCAATGATCCCCACAAGCACAGTGAAAGAATTATGAATAAAGAAGATAAAAAATGAAGAAAAGCTAAGGCAAAGCAAAGGGGAGTGTGTGTGGGGGAGTGTGGGTTCTGTACTGTCTTAAGCCTGTCCCCCCACCCAACACACACACACACACAATCTCTCTCTCTTTCTCTATCTCTCTCTCTCTATCTCTCTCTCTCTATCTCTCTCTATCCTTCCCTTTCTCACTCTATCTCTATGATTCTTAACAGTCTAAATCCAAAAGCCACTACCACATTGGCTTTTCTTGCCTTTTGTTTATGTGCTTCCTATGCAATTGTCTATGTCTGCTCCTTCTGCTCCCCCTTCTCAGTACCTGCAAATGGGGGTGGAATCATACGTTGAATTTCTTGTTATTATTTAATATTCTTCTCTCTTTCTACTCTCTTCCTTCTTTTCTTATCTTTAAATCCTGTCTGGGTAGCCTTCTCAACATGACTTTCTTGTTCTTTTCTGTTCATCCACTTCCACTCTCCCCTTGATTTATTAACACTGTGGTGCCCCCTCCAAATATGATTTCTTTTTCATAAATTAACCTCCTTTCCGTGGTATTTATGCTTTCCACTTTCTGGGGTTTCCTTTTCTCAATTCCACTTGGTGACAGACTCTTTCCCTCCCTTGAAGCTGTGAATTTTCTGGTGGGGTGTTTTGGTTGTTGCTTGTTTCTACTTCTGGCTTCCATTTGAGTCTCTCAAGAGCCTACACCACCAGGTGTTCA


Gene Sequence:
>Vu_12433(+)
ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCGGTGATAGGGAATGTGAGAAAGATGCTGGTGTCAGTTGCTGGTCCTCTTCCACTTCTTCATCTTCCAGTTCCTCTTCGGCTCGTGTGTCCTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGTGAGTGCTGAATTAGATTCACTTGGGTTTACTGAATTTCATTTCGACATGTTGCCATTTCCCTTGCATTGCCTCTATTGTTCATTTTGTTTTGCTAAACTGTCACTTCCCGGAACAGGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCGGAGGTTGGTTTTCATTTGAAGTTGTTTATGTTTTGGTGTGTTTCTAACTTATAAGGGTTGAAATTTGGTTCTTCTTCAGGGGGAACTAGTAAATTTTTTAGGTTCTTTCATTGTTTAATTAGGATAAGGGATATTTGTCTCTGAGCTTAAAATGTTAGAAGATGCACCAACTTTTCCTTTGCTGCTTCACATCAAGTAGTTCTGAATACACTGGATTCTTTTCAGTTGGAAGGGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACCCATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGTATGGCATCTTTCACATGATAATATTAAGCATTAGCACTTACAAAAAAGAAAATGAAAAGTGAAATAAATAAAACTTCTTACATAACTTAAAATAAACTTTTTAAGCATCTCAACCGTTGCAAAATTTAGATAAGAAAGATTTTATTAGAGTGTATAGATTTGATTGTATATCTTTGATTAAGGTGGTGAACTATTCTTTTACAGGATTATAAGCAGCAGAGGCCTTCACAAGAGCTCGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTAATGGAATTTGAAAAACTAGGGGTGGGGGGTGAGTATGTGACTTCATATATTGACTGATGAGGCCACATTTGATTTACATTGAGAATCAATTTATGACACTGTAGAGCACTTCCATATAAAGTTTGTGGCTAAATTAACTTGGACATACATCTAAATCATGCTCAACTGTTCAAAATACTTAGATCTAAACCAAACAGACACTAATTGGTACAAAAAATCGATGTGGTAATATGTCAGGTCAGCCAAGGCGGCATCTACTCACTACTGGTTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTTTAAGGTATATCTATCATCATGTGTACTGAGAAAGTTTAGCTATTCTTAAAGCAGTATGTGTGTTGTGGCTTAAAATCTCTTGCTGCACCTAAAAGTCTCACCTTCAATTATTAATTATTAATAATGGTCCTCCAATAATTTAGTAGAAAGTAATCATCAAATGCCAAACAAAGTATGGATTTTATTTTCTTTTTTAATTGAATAATTAATGGGTAGTTTTGTAATATGCGCATTACTTATATTGGGGACCTCCATGGTACTGTGTAGTGCCAAAACTGATGGCCTTTGTTCATGAGAATCATGAATCTAAAGTCTTACCAAACTTTGAAAACATGAAAAATGAATGATAATAATAATTTTTGAAAACCCTTTAAATCTTATTAAATGTTCTAAGTTCTAACCATCCAGTTTTAGAGAAAGAAGAGTCTATCTGTCATTTTCCTCACTGGCTAGTGATTATGAATGATTTTGTAGAGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCGAATGTCCTGTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGTACTAATACTGATTGATCGTGTCTTATTGCTTTGTAAGATGTATGAAGTTTTCACTGCAAGTATTTTTTCCTTAGATTTTGATTATGAAACACTCTAATAATGCTAACTCTTGATTGGTCTGTGACTCTGGCAATAAATTTATGTGTTTGAATTTAACATAATACAGGGAAAGTCATGCAGACTTTGTTGTTCCATATCAAAGATATGTCAAAAGCATCAAGAATCCAGTGAGCATTGGAGCAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGAACTACAACAACATAATTATAAATATTTAGTCGCATGTCTTCCTTCAAAATGATTTTTTCGTGTGACATATCAACTTCCTATCTTTCAGGTGTAATAGTGGCACAATGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTACATTTCGATTTTGCTTCATTACTATGTTGCACCCTTTTGTTTTCATATGTTTTCCCAACTTTGCAATGAGCATATGTTCTAATAACCGTTTTTTTTTCATTAACGAGGCACTTAAAGTGTAGGTTATATCTCTTCATATTGCAGTTTGCAGGTTTTCAGTGAGTAACCAAGGATAAGAAATATTAAGTACATGTTTGTGATGGATAATTTTAATAAAATAAAAGTTTATACTATCAGTGAGCTTTTAAGTATTCTTAACATCAAAATTAATTATTGTGAAGCCACTTTGTGAATCTCAGAGAAATCTGATCCTATTTCCCCAACATTTCTACATACTGTTTGCCTGCACAATTTTGGTGTCTAACTCTTAAACTGTTTTACATATCATCACATCTAATTATTATGAAGGTTTATTAACAAACCACTGACAAAGCTAAGATAAATTAACTGAGTGAAGGAACACATGAAAATCTCATTAATGTAAAGTTGCTGTGACATTCAACAGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCTTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCAACTCATCACTGGTATTAGTCCTAACACTAAATTATAATATGATTTTGCTTGGATAAACTTCTCTATAAGAGTATTCATAGGAAAAGAACATAAGAAATAAAATGCATTGAGTTTTTTTCATTAGCTCTTACAGAAGAAGTTAAATGAAAAAAAGCTTTTACAAAGGTTAAGTGCATAAGTTGTTGGTTTTTTTCACTTTTCCATTTTCTTTACCTACAAGTATTTATAGAAAAACTTATCCGAACAAGACTAAGGCTGAAATGCTTGTTGGTTGTTAACGTGATGTATCCTATCTTAATCATTCTCTTTGTTTCATTTTGCAGCACGAGGCAGTGGGTTGGTGGGTTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTGTGTCACTCTACTACGGATGTGACACGGTAACCAAGCCACTAGGTTTTGAGATGAGTTCTCCTAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGCTACCTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCTCTGACAGGAAAGATTGATTTGAATCTTGGTACCTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCAACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGTTCAACCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAAAGAGAAAATGTCCCATTTAATAAACCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGACAACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCATTAGGGGCTGCAAATATGGGGGTTCCTAATGACAATAACGTCCAGGGAAAAGTAAATGCCTGCAAACTATTCGGGTTTTCTTTATCTGGGGAAACCACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTGAGGGATGATGATAACAAAATTATGTTATGATATGCCTTTTTCTCTCTCAAGTTTTACCCACGTATATAACATACACTAAATGAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGATTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTAACAACGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCTTGGCAGTGAGTATTCTTCTTCCAGGACTCAAAACAACACTTTAAAGAATGCTGCTTTTTCCACCTTTTAATCAGTTATCAATGATCACATCACCTGTTTCAATATGTACTTAAAACATGATGTCACTTGTACTCTATTCTATGTAAGCTATCTATTGTCAGATCATAAAATAATTCTCATTTTCCTATGGCTGCAGTGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAAATGACAATTGGGATCATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCGAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA