Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12384 LG3 16402047 16404885 PREDICTED: auxin response factor 18-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   petal development, petal development, fruit development, regulation of transcription, DNA-templated, root cap development, abscisic acid-activated signaling pathway, root cap development, regulation of anthocyanin biosynthetic process, root cap development, leaf development, fruit development, fruit development, sepal development, regulation of transcription, DNA-templated, developmental growth, abscisic acid-activated signaling pathway, sepal development, auxin-activated signaling pathway, regulation of transcription, DNA-templated, regulation of anthocyanin biosynthetic process, petal development, pattern specification process, regulation of transcription, DNA-templated, cell division, sepal development, sepal development, auxin-activated signaling pathway, leaf development, abscisic acid-activated signaling pathway, petal development, response to carbohydrate, auxin-activated signaling pathway, root cap development, abscisic acid-activated signaling pathway, auxin-activated signaling pathway
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, miRNA binding
SNP Position Effect Amino acid change
T/A 16402135 missense_variant p.Val30Asp
G/T 16402256 missense_variant p.Glu70Asp
A/C 16402305 missense_variant p.Thr87Pro
G/T 16402317 missense_variant p.Gly91Trp
A/G 16402631 synonymous_variant p.Glu195Glu
G/A 16402677 missense_variant p.Gly211Arg
G/A 16402679 synonymous_variant p.Gly211Gly
G/A 16402726 missense_variant p.Gly227Asp
G/T,* 16402749 missense_variant p.Gly235Cys
C/T 16402776 synonymous_variant p.Leu244Leu
A/G 16402779 missense_variant p.Arg245Gly
G/A 16402793 synonymous_variant p.Lys249Lys
G/A 16402806 missense_variant p.Gly254Ser
C/T 16402879 missense_variant p.Ala278Val
G/A 16402889 synonymous_variant p.Leu281Leu
T/C 16403260 intron_variant
G/T 16403266 intron_variant
T/G 16403388 intron_variant
G/T 16403615 missense_variant p.Arg399Ile
C/T 16403782 synonymous_variant p.Leu455Leu
C/T 16403828 missense_variant p.Pro470Leu
C/T 16403838 synonymous_variant p.Ile473Ile
C/T 16403912 missense_variant p.Ser498Leu
C/T 16403914 missense_variant p.His499Tyr
G/A 16404258 synonymous_variant p.Arg613Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12384.1
MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSEPGTDAEGGADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGFEVWNSASGSGSGSIGGSGNCGIGPYGPFSFFLREENKSLRNGGGGGGGGGNLSGRAKVRPEAVVEAVTLAAANKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPPFSGNQLGPNHPLCGFSDNAPAGIQGARHAQIGTSLSDLHLNSKLQLGLLPSNIQQHGLYSGISSGNTTNHDKSKESLSHLLTIGKSSKTLEKSDDVKKHQFLLFGQPILTEQQISGDVLSRGKKSPDDVKDKEKCFLDDSQSALFSSGKASAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEIPNYVFYYDAKGAVKQTGEEPFSDFMKTAKRLTILTDSGSKNVTRAFITGTRNGEHGLDASNKTGPLSIFA*


CDS Sequence:
>Vu_12384.1
ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCCAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCAGAGCACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAGGCGGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTTTTTGCCAAACTGAGTCTGGTCCCTCTCAGAAACTCGGAACCCGGTACCGACGCGGAGGGGGGTGCTGACGTGGCGGAGGCTTCGGAGAAGCCCGCGTCTTTTGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCAAAGGACGTGCAGGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACACCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAAAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATCGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGCTTAAGGAATGGTGGCGGCGGCGGCGGTGGTGGTGGGAATTTGAGTGGCAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCAGTGACCCTGGCTGCTGCTAACAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTAAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGAATAAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAACTGGTGTCAAACTTGCCAGTGATAAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGCAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCAGATCTCCACCTTAACAGTAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCAGCAACATGGACTGTATAGTGGGATTTCAAGTGGTAACACGACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCATTGGGAAATCTAGCAAGACTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTCACCGAGCAACAGATTTCTGGAGACGTGTTGTCCCGTGGGAAAAAATCACCGGATGATGTCAAAGACAAAGAGAAGTGCTTTCTGGATGACTCCCAATCTGCACTCTTTTCATCAGGGAAAGCTTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCACGGCTTGGTTCTTATGAAGAACTCTATAGAAGGCTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTACGTGTTCTACTATGATGCAAAAGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGACTTCATGAAAACAGCGAAAAGGTTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTACAAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTGGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA


Promoter Sequence:
>Vu_12384::LG3:16400047-16402047(+)
AATTAAATAAAATGCATAAATAAATATTTACAATCAATCAATAAACCAAAATAATTAAGTTTTCGAATTTAAAAAGAAAAGAATGATAAATTTTATATTAGTTTAGCTTGTGTCTCTTTGATTTTAATTTCCCTCCTTAATCTTCCTCAGAAAAACCAATTATGGTTGTATACTTTAAAATATTTCATTACATTTAATTGTGTAAACTAAACTTGCAAAAACAACCCAAATAATGTTTTAGGAACTGATTTTCTAAATGAAATGTTAATCTATAAGCATATTTTAGAATAAAACGTCACTAAATTGAGTTTACTTTCCAAACAAAATTTAGAGTATTATTAAAAACTTAGCATAATCTTAATATTATTTTTTAGCGGAAGAGAATGCACGGTAAAGAATTATTTTCATAACTTATCTTCAATATAATTTAAGAAAATGGGTTTTTATCAAATCAAACTATGTTAAATATGAATAAATATAAATATAATTTATTTAAGAATAAAAAATAAACATTTAGAATTAGATTTTACTGTTTGTGGTAACATTGTTTGGATTGAATAAATATCTCTTTTAGAAGATATAACATATAGAAAATTATGACGAAAAATTAATTTATTTAATGGATATAAAATGACAAGAGAATGTGTTATGATAAGATAAAAACGTGAGAAGGTAAAAATTACCCCGTGCTATTTTAGTGAAAAAATCCATATTTATTGGCCAAAAATAAAATTCATTTGGCATTCTCATTCTTATTTATGTGTTTGTTTTTCAAACAATTAATAAGTTTTGGCTAGCCAAGAAATGGGTTTGATAAGCAATTACCTATCTTTCTTTCATTAAAATTTTGAAGACTCCAAACAAAGAACAAAACAAAACCAGCTCGTGTTTCTTGTGCTTTGTGTGACGAATCTCATTACCAATATCTCTTAGAACTCATGAATATTTAGAAACTTTATATATTTTAATACTAACTTCTCTTATCATCGACAACTCGTTTAAATGTCTTATTATTGATTTTAATACTTTAGAAGGTTAAATAAAGATAACTTTTTCATCTAAAACATGTTTATTCTTCTAACATCTCCATATTGGTAATAGATTTATTCAAAACTAGATATCAATCATCATGACAAAATATATTTTCTACAATCCCCATTTACTTTAAAATGAATTTACACGTAATAACACATTCATTTATAAAACTACACATGATTTCCTTACTCTTTATTTTCATTACTGTAATATTTTTTACTATAATAAATATTAACAAGAATAACATCATATATTGAAAACTGTATATTAAAAAAAGTAAAACTAAATTGAACGTGTATAAAAAGTACCCAGAAAATATGTACTAACCTAATATTAAAAGTTAAGAAATTTAATTTAATTGATTTTTGAGAAGAAGAAAGAAAAAGTTGTGACAAAAACATTTTCCCAATTAATTAACGGTCCATCCGTGCCACCCAGTACAGTGGAAAATTCAAACTTTACCAACACTCACTAAAAACTCGCGATATTTTCCGCCATCGTAGCGGTTATAGCACCATTCCCTATTTATCACGTCATAGACTCATAATAATTGCCATAACCTAAAATAAAGTATTAAATTTCCTTTCGCTTTCCCATTCTTATTTATTGCAAAAGCAATTAATAATTAATAAACATGAATTTTTGGCTGGCCAAGAAGTCGGTTTGGTCGTTTGTTTCGTTCATAATAGCTTCTGAAGAGTGTCTGTGTCTGTCTTCTCTGTGTTGTAGTGAGAGAAAAATAAAATAAAGAGAGAGAAACATCATAGAAGAGGAAGAGGAAGAGGAAGAGAATAGGAAGAACTTCTCTTTCTTTCACTGAGATCTGAACCAACAAAACAAAAACAAAACCAGAGTTTGGTGTTTGTTCTCTGTGATGAAGCTCGTTACCGATTCTGCCCATGATATTTGTGTCTGAACTTTAACGTTGTCTTTGAAGAGATTGTTCTTTTGTTTCTGCGTTTCGA


Gene Sequence:
>Vu_12384(+)
ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCTGGTGGCATGGTTCAGATGCCCAAGGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCATGCAGAGCACGCCCACACCAACATTGATCTCAGGGTTCCGCCACACATTCTCTGCAACGTCGAGGCGGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTTTTTGCCAAACTGAGTCTGGTCCCTCTCAGAAACTCGGAACCCGGTACCGACGCGGAGGGGGGTGCTGACGTGGCGGAGGCTTCGGAGAAGCCCGCGTCTTTTGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGGTGGCAAAGGACGTGCAGGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACACCACGTCGGCACTTGCTGACGACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAAAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATCGGGTTTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTATCGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCCTGAGAGAGGAGAACAAGAGCTTAAGGAATGGTGGCGGCGGCGGCGGTGGTGGTGGGAATTTGAGTGGCAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCAGTGACCCTGGCTGCTGCTAACAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTAAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGAATAAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATTCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTACTCTCTCCTTCTATATGCATGCTAAACATCACTTTAGATCGCTCTTCACCTCCTTGCTTTTTCGAGGAACTCATTCTGGATCCAGACTCCATTTCATTTTGCTTTTCTTCAGCAATCTTATGTTCTGTTTTTGGGATAAAGCCATCCAAACATCAATTTTGTCTACTTAAAGTTAATTTTAACACAAATCAATTTCGTATGAAAACAATTTTTTATGTTCTCATGTTTGTTATTGATTGGAGAAATTAGATTTTTTTTTTTTTGCGTACTTTGCAATCTCCATTGCAGTGATATCGTGGATGTGTTGATTTTGGTTGAAGATTATATTGTGCAAAGTTGATTGATGATGTTGCCATTGTTATCCCTGCAGGTAACTTGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAACTGGTGTCAAACTTGCCAGTGATAAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCACCGTTTTCAGGCAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCAGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCAGATCTCCACCTTAACAGTAAACTGCAGTTGGGGTTGCTTCCATCTAATATCCAGCAACATGGACTGTATAGTGGGATTTCAAGTGGTAACACGACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCATTGGGAAATCTAGCAAGACTTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTCACCGAGCAACAGATTTCTGGAGACGTGTTGTCCCGTGGGAAAAAATCACCGGATGATGTCAAAGACAAAGAGAAGTGCTTTCTGGATGACTCCCAATCTGCACTCTTTTCATCAGGGAAAGCTTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGACACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCTTAGACCTATCACGGCTTGGTTCTTATGAAGAACTCTATAGAAGGCTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCCAAATTACGTGTTCTACTATGATGCAAAAGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGGTATCATTTTTGTTTTCGTTTTATTTTCATCTTGGCCTCTATTGATTCATTTTATATATAAGTTACCCAAATCTGGTAGCTCTTCCATGACTTGTAACCTTCGGATACACGTTTTTATCTTAGGCATATATTTATTTGGGTTGTCTCTTGTGATCTTATTGCAGTGACTTCATGAAAACAGCGAAAAGGTTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTACAAGGTAAGAAAGAGAAGGAGCTTGGTCTTGTTACACATTTATCTTCATATTTGTGGATAGCTACATGTTGATATTCCTTCTCGGACAAAGGAAAGCAAGAATCATGACGCTTATGCATAGAATCATTCACAATTTTTGCATAGAATCATCACATTATAGTTCTACCAAAAGTTTTTATGTATGTATGTCTAATCTTAGTTCCAAACGTATTGTGCAGGGCCTTTATTACAGGAACTCGGAATGGTGAACATGGACTGGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA