Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12356 LG3 15938758 15939264 PREDICTED: transcription factor TCP15
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding
SNP Position Effect Amino acid change
G/A 15938761 missense_variant p.Ala2Thr
C/T 15938766 synonymous_variant p.Ser3Ser
A/C 15938769 synonymous_variant p.Thr4Thr
C/T 15939026 missense_variant p.Ser90Leu
A/G 15939036 synonymous_variant p.Ser93Ser
G/A 15939048 synonymous_variant p.Pro97Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12356.1
MASTTPVPLKSSNTKLPPLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTNGETIGWLLRQAEPSIISATGTGISPSIVDLTSSSSSPSPSSSSLPILPLPSQDNNVVVDQHANSVHVSIDNEINSKETFLPLDFDVFSNFNVEFSAAEIEMLQSLMTRLG*


CDS Sequence:
>Vu_12356.1
ATGGCTTCCACAACCCCAGTTCCTCTAAAAAGCAGCAACACAAAGCTACCACCTCTAAGGGCAAAGAAAGATAGGCACACGAAGGTGAATGGCAGAGAAAGGCGTGTTCTTCTGCCACCTTTGTGTGCTGCTCGCATCTTCCAACTCACTCGTGAGCTAGGTTACAAGACAAACGGAGAAACCATAGGCTGGCTTCTGCGCCAGGCTGAACCCTCCATTATTTCTGCCACTGGGACTGGTATATCACCTTCTATAGTTGATTTAACGTCATCGTCATCATCACCGTCGCCGTCTTCTTCGTCACTGCCGATACTTCCACTGCCTTCTCAGGACAACAACGTTGTTGTTGATCAACATGCAAATTCCGTTCACGTTTCAATAGACAATGAGATCAATTCTAAAGAGACATTTCTGCCATTGGATTTTGATGTGTTTTCAAACTTTAATGTCGAGTTTTCTGCTGCTGAGATCGAAATGCTCCAGTCATTGATGACTAGGTTGGGCTGA


Promoter Sequence:
>Vu_12356::LG3:15936758-15938758(+)
CATTGGAAGTATGTTGTTTAGTGTTTTCAAGTTAAATTGGAACATGAAATCTTTAATGCATCATTAATTTCATAAATTTAATTATTTTCTAAAATTAATTTCTTTAAGTTCATTCCTTCGTGCTTTAACCTTAATTAGTAAATAAACATGATTTTACTAAAGAAACACAAATTTTTTAAGAAAACTATATTTAAACTTTTCACTTTATTAATCCTACGATTTAATACACATGTCAATATTATAACAATTAGAATAAATGAATTTATATAGAAATAAAAAATAATTAATAAAAAGATTTCAATAGGAGAGTTCTTACAACATTAAACATTAATCATTAAGAAGATGATATTTTTTTCTTCCAACCTACTAAATGGATGATAAAACATCTAATCCTGAAATGAATTTTCCTATAAATTCGACCTTTAACCCGTAAATTTTGTTTATTTCCCAATTTATACAAATTATATTTAACATAGCTTTTATACAAAATATCATCCCTTTAATTGATTTTTAAAAAATACAATATATAAGTATTATTTTGTATTTAAAGCAATTAGCAGAGAGTTTTTATACATAATCACATTGAAACCTATGTATACTTAGATACATATGTTCACATTAAAATATTTACTTCACAATATCTCCATATATTTTTGTGCTTATTTGTGCAATGTTAATTTCATGAGTGCAAAAAGAGAAAATAACTATACATAGATAATTTTGGTATTAATCTTTTAATTAGAATTTAATTTTTATCTTAATAATTGTTTAATCAAAGTTTACATTAAATTCAAACACATGTCACAAATTAAAATCTTTCTTCTTTAATTTATTTGATGAATTTAAAACCAAAAATATGTACTCAATTTTAAGATTATACATATATATAAACAAAAAGTCACATGAAATAATCAAATGTTATAAATCCAAGTCTCATTTTTTTGTCTTAATTAACATTTATTCATCTTGTTTTATTTTGTGAATAATGAAAGAAAGGTTACCTATATGGTTTCATGCATATTTTTATCTGAAAACAGGAAGCAGGAAGTGTGTTATGAAACGGTTTCTTAGTGAGTTCTTATATGCTTCCATGCTTGTGAGTTGTCAACTTGATTTGTTACAGTGTCTAAAGAGAAGACAACTAAGATGTTTTAAGGAGCAACGTTTAAAACTCTTGGATTGAACCACTGTAGAGAAGACAACCAAGCTTCGTGTGCTTCAAAAAACGTTTTAAGTCCTAAATAACACTCACATTGCTTACTTGTCATGCCTGTTGCACCTGCAATTTCCACAAACTTTTAAAAATACACCAACTTTCCTTCAAATACCACCAAACATTGAAGCCTTTGAAGAACACTAAAAATGCTCATTTTGGTCAGGCTTTATGGGGCGTTACAAAATCAGGCATTCATGGTTTTATCACATTCAGTCACAAGCCAAAAATTCAAGCTCAGATTATGCTTAAACCTTCCCAATTTGAAACTCTGAAGTGCTGAACTGTGTGTCAAAGAGAAAATAAACTTGTATTAAATTAAAAACAATTCCTTATTTGTTAAAACAGTACTGCCATGGTAACTTATGTTAACTTTTAATATAAATCTTTATTACTTAAAAATTACCAAAGCGAATCCTAATCCTAATTGAGAATAAAAAAATATATTTAAAGAACTACATCTAAAATTTGTCCATTTAAGCAACCATCCAAAACAGAAGTCTATCCATTAATAGAAATGACACTACATTTTTTGCAAAATATTTCTTACTGATCATCCAACTCGTTTTATGTGGTAAATAAGTAGTAAATTTTTTATGTTTAAGACATTAAATACATTTATTGTTTTAATGAATACTTTCTTTATAAAATATTTTTTTTAAAATAGAAGGAGATGTTATATTACTGTATCGAAAAACGTTTCTTGTGGTTGAGTGGGATGATTAGTATAAAGAGGGTTAAGTTTATGAGGTGTTGTTCACATCAAAGTTTAACGAAGCAAAAAGCA


Gene Sequence:
>Vu_12356(+)
ATGGCTTCCACAACCCCAGTTCCTCTAAAAAGCAGCAACACAAAGCTACCACCTCTAAGGGCAAAGAAAGATAGGCACACGAAGGTGAATGGCAGAGAAAGGCGTGTTCTTCTGCCACCTTTGTGTGCTGCTCGCATCTTCCAACTCACTCGTGAGCTAGGTTACAAGACAAACGGAGAAACCATAGGCTGGCTTCTGCGCCAGGCTGAACCCTCCATTATTTCTGCCACTGGGACTGGTATATCACCTTCTATAGTTGATTTAACGTCATCGTCATCATCACCGTCGCCGTCTTCTTCGTCACTGCCGATACTTCCACTGCCTTCTCAGGACAACAACGTTGTTGTTGATCAACATGCAAATTCCGTTCACGTTTCAATAGACAATGAGATCAATTCTAAAGAGACATTTCTGCCATTGGATTTTGATGTGTTTTCAAACTTTAATGTCGAGTTTTCTGCTGCTGAGATCGAAATGCTCCAGTCATTGATGACTAGGTTGGGCTGA