Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12322	LG3	15420577	15421494	PREDICTED: zinc finger protein ZAT5-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding

SNP	Position	Effect	Amino acid change
A/G	15420787	synonymous_variant	p.His236His
G/C	15420799	missense_variant	p.His232Gln
G/A	15421150	synonymous_variant	p.Asn115Asn
C/A	15421269	stop_gained	p.Glu76*
G/A	15421276	synonymous_variant	p.Ser73Ser
G/A	15421373	missense_variant	p.Ala41Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12322.1

MEMEGLDSNSNSNSYSSSAQSNIAKGKRTKRMRLLSPSGVAVVTTAATTGLTTTTTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGESHPHQPHHHKQRVEDHNGVKTAKGNGNTITTAAAAATTAVDTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLSPEEKKPPPSQSPHVAVTTYDRFEEDNVKNGPPISLQLGHGNNKVKIHECSICGSEFSSGQALGGHMRRHRSSTNTNTVDTSSSNTVIAVATTVSPPRNVLQLDLNLPAPEDDIREAKFQFPVTTQMLVGTPALVDCLY*

CDS Sequence:
>Vu_12322.1

ATGGAGATGGAAGGGTTAGATTCTAATTCTAATTCCAATTCCTATTCTAGCTCTGCCCAGAGCAACATAGCCAAGGGCAAACGGACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGCCGTTGTTACCACCGCCGCCACCACTGGACTCACCACCACCACCACCAGTTGCTCCAGTCCTAACTCCGGTGGCTCCTCCACCACCACTTATGAGAGCGAAGAAGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCACCCTCATCAACCTCATCATCACAAACAACGAGTTGAAGATCATAACGGTGTCAAGACAGCAAAGGGTAACGGTAACACCATCACCACCGCCGCCGCCGCCGCAACAACCGCAGTTGACACCAAAGTTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCACTGGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTTTCGCCTGAAGAGAAAAAACCACCACCCTCTCAATCGCCACACGTGGCTGTTACAACCTATGATCGGTTCGAAGAGGATAACGTTAAAAATGGTCCTCCGATTTCCCTTCAATTGGGTCATGGCAACAACAAGGTCAAGATTCATGAATGTTCCATCTGCGGTTCGGAATTCTCATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGTCATCGACAAACACCAACACTGTTGACACATCAAGTTCTAACACCGTCATCGCCGTGGCCACCACTGTTTCTCCGCCGCGGAACGTCTTGCAGTTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCTAAGTTTCAATTTCCGGTAACAACTCAGATGCTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG

Promoter Sequence:
>Vu_12322::LG3:15421494-15423494(-)

AATAAAGTTAGCACATGAAAATTAAATATAAAATATAAATTTATTTCATAATTGCTAAGTATAGTTTTACAATTGAATTGCTTTTAAGGAATTTTACATCATGTTCATAAATTAAAAATCATTCCACACGTAATTTTTAGATTAATTATCACGAAAACGATCAAAATTTAATGTAGATGACCAACCAAGGACAGTCGGAAAAAAAAAAGTTGACACTGTGAATTCCTTTCAATTAAATTTATAGAAAAAAAACACTACCAGATACAAATTAAATTTATAACTTTTTTGCCAGTCAATAAATGTAAAGTAAATATAATTTTATTTTTTTCCATAATGAGTAAAAACTGAGGAGAAAAACTGGTTTATAATTAATGTACTGTATATAAACCATTGATGATTATTTTTGAACTAAAACTCTCAAATACGAAATCATTAAAATGTTTAACAATAATTTGTTATTGTGACAGGTGATCTTCTAAAGTTTAACCAATGAAGCTTTCAGCATAAGATGAAGTTTAACGAAAGGAAATTATGAGGAACCCTACCCTTTGGTAGGAAATCTCCTAAAGTTCTTACGTTCTATACTTCTTTTATCATGCCGTCTCTTCTTTACTTCATATCATTAATCCAACCCTACATTAGTATACCTAATTCTTAACTAATTATAAAATACCCTTTTTCTCAAAAAATAAAATAAAATTCATAACTATTATTTATTTTGTTAAGAATTCAAATATAAATATTTTGATTTCAAAGTAAAAATGAAATTATTTTGTAACATATAAAATAATTATACATTTGTCTTATATCTAATAAAATGAAACCTCCAAGTCATTTTTTTATAACGGTTTGAAACACACTCAAATAATTATTACATTTGGATTAATAATTTTTTCTTTAATCACACAGCTTGAAAGCCACTTGAATGATGATTACCCTTGGATTAGTAATTTTTCCTTTAATGACAGAAGAGATTAGAGAACTAAATTGTGAAAGTTGACATGCTTTTAACGTGATGCAATCTCACTTTTCTTGAAGGGATTAGTGTAAATAGTTGCCCTAAAGGTGTGAACAAAAGAGAGCGTTGAAACCGATTCTCAAACGTTAAGGCCAACCTTTCACGCTTTCTTTCTTTAACTCCTCCATACTTTTTTTTTTCTTTTTCCACTTTATAAGTTACTTACTTATCAGATCCATCAATCTCCTTCTCTAATTCCAACCTAACTTACTAGTAAACCCAACTTTAAGTTATACACTATATATATTAATTACACTCCCACTAATTAAACTCCCCATTAATTACGAAATAAAAACCATTTTAATCATGGAAGAATAATACAACACAAGCATTGACATTCGCAACTTTATTATTATTATTTTATAACAACATACAACACAAGTTAACACGCTGCGTTCACATTTTTATAGTAATAGAAAAAAAAATACTCAAAACACAATTAAAAAAGAAAACAGTCTCAGTTTTTATTTCGTTAGTTACTTTTGTTATCAGAAAAAATAGGTATAAAAATGTATCCTATGGATAATAAAATAAAATATTATTTCAGAAAAGTAACACCCTGAGGCTGAGCTGATGTTATTATAAAATAGTAGAAGTTAAACAGAAAGCAAAAAAGTGTGGTCACGATGAAGGCGTAGAAAGAAGTGCTCAGAGAGGCGCGTGAAAAAGCTGAAAGAAGTTAGTTTTCTTGTTAGTAACACTTCGAAGGTTGGAAACGCAAGGAAGATTTTGGTGACAGACCACTTGGGTGTAGCTGTTATAAGACGGCTTCAACTTCTTTGTTGCCATTCACTACCAAATTTCACAACACACACATACATATATATATATATATATACATATCCACATAACATAACCACTTCAATTCCATCACTACATCGTAATCACATTTCTCTCTCTTACCTTAAATAGCATTGTTTTACATATAAAACTGCTGCGTTGAGGCTTTGTTTCTCATCACTTAGGTTGTTTCAGTTTGGTT

Gene Sequence:

>Vu_12322(-)