Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12251 LG3 14490804 14493966 PREDICTED: zinc finger protein WIP3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of gene expression, anatomical structure development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 14490915 synonymous_variant p.Leu11Leu
T/A 14490922 missense_variant p.Leu13His
T/A 14491002 missense_variant p.Ser40Thr
T/A 14491011 missense_variant p.Ser43Thr
T/A 14491025 synonymous_variant p.Ser47Ser
G/C 14491124 synonymous_variant p.Val80Val
T/C 14491214 synonymous_variant p.Asp110Asp
T/C 14491289 synonymous_variant p.Asn135Asn
A/T 14491361 synonymous_variant p.Ile159Ile
G/A 14491531 intron_variant
C/T 14491543 intron_variant
A/G 14491628 intron_variant
G/A 14491681 intron_variant
C/T 14491699 intron_variant
C/A 14491730 intron_variant
A/T 14491796 intron_variant
C/A 14491855 intron_variant
C/T 14491864 intron_variant
C/T 14491939 intron_variant
T/C 14492020 intron_variant
C/G 14492063 intron_variant
G/C 14492083 intron_variant
G/A 14492235 intron_variant
C/G 14492578 intron_variant
C/G 14492621 intron_variant
G/T 14492682 intron_variant
A/G 14492743 intron_variant
G/A 14492778 intron_variant
C/T 14492802 intron_variant
A/T 14492804 intron_variant
G/T 14492875 intron_variant
A/T 14492924 intron_variant
G/A 14492925 intron_variant
A/T 14492931 intron_variant
A/C 14492934 intron_variant
G/A 14492945 intron_variant
A/C 14492946 intron_variant
C/T 14492955 intron_variant
G/T 14493005 intron_variant
T/C 14493010 intron_variant
G/A 14493021 intron_variant
G/T 14493041 splice_region_variant&intron_variant
A/C 14493045 missense_variant&splice_region_variant p.Met172Leu
G/A 14493047 missense_variant&splice_region_variant p.Met172Ile
G/A 14493057 missense_variant p.Gly176Ser
A/T 14493065 synonymous_variant p.Gly178Gly
T/A 14493066 missense_variant p.Ser179Thr
C/A 14493084 missense_variant p.Pro185Thr
G/C 14493087 missense_variant p.Asp186His
T/G 14493090 missense_variant p.Ser187Ala
C/T 14493108 missense_variant p.Pro193Ser
G/A 14493111 missense_variant p.Ala194Thr
G/A 14493114 missense_variant p.Ala195Thr
G/C 14493149 missense_variant p.Gln206His
A/G 14493156 missense_variant p.Lys209Glu
A/G 14493159 missense_variant p.Asn210Asp
C/A 14493171 missense_variant p.His214Asn
G/C 14493178 missense_variant p.Arg216Thr
C/G 14493214 missense_variant p.Thr228Arg
A/G 14493229 missense_variant p.Lys233Arg
G/A 14493264 missense_variant p.Gly245Arg
G/A 14493265 missense_variant p.Gly245Glu
G/A 14493296 synonymous_variant p.Arg255Arg
C/G 14493298 missense_variant p.Thr256Ser
C/T 14493302 synonymous_variant p.His257His
A/C 14493310 missense_variant p.Asn260Thr
A/G 14493323 synonymous_variant p.Leu264Leu
G/A 14493340 missense_variant p.Gly270Asp
G/T 14493345 missense_variant p.Asp272Tyr
T/C 14493347 synonymous_variant p.Asp272Asp
C/A 14493354 missense_variant p.His275Asn
A/C 14493357 missense_variant p.Lys276Gln
T/C 14493374 synonymous_variant p.Asp281Asp
C/A 14493401 missense_variant p.His290Gln
C/A 14493471 missense_variant p.Leu314Ile
C/T 14493520 3_prime_UTR_variant
A/C 14493535 3_prime_UTR_variant
C/T 14493565 3_prime_UTR_variant
G/T 14493591 3_prime_UTR_variant
A/G 14493597 3_prime_UTR_variant
G/T 14493605 3_prime_UTR_variant
C/T 14493610 3_prime_UTR_variant
C/T 14493616 3_prime_UTR_variant
C/T 14493629 3_prime_UTR_variant
C/A 14493719 3_prime_UTR_variant
C/T 14493758 3_prime_UTR_variant
C/T 14493775 3_prime_UTR_variant
G/A 14493789 3_prime_UTR_variant
A/G 14493794 3_prime_UTR_variant
G/C 14493802 3_prime_UTR_variant
T/C 14493806 3_prime_UTR_variant
T/C 14493896 3_prime_UTR_variant
A/G 14493900 3_prime_UTR_variant
G/T 14493923 3_prime_UTR_variant
T/G 14493929 3_prime_UTR_variant
C/G 14493963 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12251.1
MECNVENNKNLYLHAPTFIEWLKPCSSPSYLNSNTISTSSSSSSSFSSFSFTQHDLVHETIQFLPIEASKDEDHHQSFEVKEEKLEQVTVALHIGLPDSAKRHHEVVDDDDEKMIFHVKEEEASSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDELNAHHHA*


CDS Sequence:
>Vu_12251.1
ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCTAAATTCCAACACAATATCTACTTCTTCTTCTTCTTCATCATCTTTTTCTTCTTTTTCCTTCACCCAGCATGACCTTGTTCATGAAACCATCCAATTCTTGCCCATTGAGGCCTCAAAAGATGAAGACCACCATCAAAGTTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTCACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTAGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGCTTCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTTAATCAAGAGAGAAGGTTCTGGATTCCAACTCCAGCTCAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCACTACAAAAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTATGGTACTGCACTTGTGGCTCAGATTTCAAGCACAAAAGATCACTTAAGGATCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGCTCAATGCTCATCATCATGCATGA


Promoter Sequence:
>Vu_12251::LG3:14488804-14490804(+)
GTAAAATAAGATTTATCAACAAATATTACAAATGAATTTTAGAATTTTAATTATGATATATCGATAATTTAGAATTTTAATTACCAATGAAATTTTTTGTCAGTATAGATTTGTCAATAAAATTCGTTGATAAATTATAATTTTATTATTGATAAATTTTTCTGATAAAATGAGTTTAAAGTTTTCATTTTGACTTTGTTGATAATTAATTTTTTTTTAAAATATTTGTTAGTAATTTAACTTTTTAAAATAGATATCAAATTTAATAATGAAGAGGAGAAGGAGAAGGAGGAGGAGTTAGAGTTGAAGGAGGAAGAGTCATAATTGGAAGAGTGAGAAGGAGGAAAGATGATAGAAAAAGAATAATAATAGTTATATAATAATAATAATAAGAATAATAAGAGGATAATTTTAGTTTTGTTTTACAGTAAAGTATCACATAATATAATGTATACAAATGTTACTAATAATATATTTACTAAATAAAACAGTATCATAACATTTTTTAATGATAATTTCGTATGATGATTTGTAAAGAATATTGTTGCAATATCTCTAGTCTCGTGAATGACAATAAGTACATATTTACACATTCAATACAAGATTCAATGGTTCTATATCCTGCTAGTTTTTTAATTAGAGGTGTGGTTTTAGTAAGATATATCCAAAAATAAGCTTTTGATTTCCTTTTAATTAGAAGATGGTAGCTAAACGTTGGAAACTGTTTGTAATTGAAAAAAAAAAACTAAGAATTAAAAGAAAACAATACAAGTAATATATATGAAAAAAATGGTTATATATAAAATATTAATTTATGGATTGAAAAATATTTGTAAGTTGGTGAAGCCATGATGAATTAGGCACCATATTTTCTCTCCTTAAATTATTGACTTATTGAAGTTAAGGAACACGATGCCCATATTTATAAGCACTAGATAACATTATGTCAAGGTCTTTCTTTCCTTTTGTTCGTCATTTATAGTATTTTTCTTTGTTTAGGTATTGACCACTTAATGCCGTCTTAAGGTCAATGTTTCACAAACTCTATGCATACCATCTTAACACTTTGCACAAAAATCTTTCATCAACACAAATACTCTTCACATTATACCAATCGGATTTCAATACATAAACCAATTCATATAAAAAAGTTTTTTTTTTTTAATTTTTATGAAAATTAATTTTAGTTTGTAGAAAAATCAATTCCATTTTCTTAACTCCTACACAGTCTTTATATACACAAAGAAGAGTTAAATACACGATACATGTATATATAAAAGCCTATGCCTTCATGATGAAAAGAATCAAAGTTCAAAGCCTGAAATAAATAAATAGATAAATGGAATATTACTAGTTCTAGAAAATATGACAATATCGTGTCCCAAAATTTCATTTGAGTAATTTTTTTTTTTATAAACTAAACATTTTTTTAGTAGAAAACATATTTACTCGTTATTTAATGAAAGTAACACTCGTTATTTTGGAAATTTTACAAGGTCTACCTTATTGATTGAATTCCTTGTTTAAGATTCAATTTTCTCTCCTTATATTGATTTATTAAGTTTAAATAGTTACTTGGAAGTGCATTTATTGAAGGAGTTAAATGTTATTGGAATTTTTTTAGTTAATTTAATTCCTTGCTAAACTTATTGAAGAGGTTATATATGAATATGATGTTTCTAAAATTGATGACCAAGGCGAATCTTTCCCAATCTGACGACTAGCATTGATTAGAATTCAAAGTTGAGACTATTATAGGATTCTTTCCAATAAATGAGTGAGTTTTAATTTTGCATGTCATTTTCATACCCTCCCATTAGTCTCTCCCTAAAAGAAACAAACAATAAAAGGACAAGAAGGAAAAAAAAAAAGAAAAAGAAAAGAAAAGTAAGGGTTAAAAAATAAAGAAAAAAAGAAAAGGTCCATAAAGACAAACAAAGCCTCCATTCCTTAATCAAACCATATTATAAGTGCAGGCTTTCTACCATAAAGTCTGAACA


Gene Sequence:
>Vu_12251(+)
ATACACACACACATACATAACATAACATAACCCTTTTCTGAGGAAGAGAGAAGATAATTCTCTAAATCCAACAAGGGTTTGATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATATCTAAATTCCAACACAATATCTACTTCTTCTTCTTCTTCATCATCTTTTTCTTCTTTTTCCTTCACCCAGCATGACCTTGTTCATGAAACCATCCAATTCTTGCCCATTGAGGCCTCAAAAGATGAAGACCACCATCAAAGTTTTGAGGTGAAAGAGGAAAAGCTTGAACAAGTCACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTAGATGATGATGATGAGAAGATGATTTTCCATGTCAAGGAAGAAGAAGCTTCCTCCAAGAGAAGCTTCCATGGCTGCTCCTTTAATCAAGAGAGAAGGTTCTGGATTCCAACTCCAGCTCAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGGTTAGTTAAATTGCTTCTCAACTTCTCACATATCTTAATTTTGAAACTTGATTTGCCAAGAAAAGTAGAAAAATATTGTTGAAGAAAGTTGCAACTGTGAATTAATTAGAGACAAAAGATCATAATGATGTCTGAGTAAAGTTAACAGATGTTTGTGAAGAAGACAAATGAAGAAGCTTTATTATAAAGATGAAGTATGAACAGTACAAGTTGAAAGTTTGATCCATTTTAATTTTTTCATATCTGTGGAGAATTTCTTTGTAGCAGAAGTTAGGAGCTGATCGTGTTGATAAGATCACCACCACTATGAGGGAATATAGTTGTTGCACATGCCTGATCTACCTTTGAAACATGATCACAATAATTAATTACGATTTGTTTCAATTAAAACTAAACATACTGATTAACTTATGTGATTCCTCTAATGAGATTTCAAGATTTATTGGGTGGAGAAATGCAAGCTTATCAGTACTATCATGTACTCACTCAAAGACTTTGCACCCCACTTGCGACAAACTTTGTTTCAGATTTTATCATCACCCCAAAAATTGCCTCCAGTTTTATTTCAGAAAAAAAGCACAATACAATTAATTATTACGTCCTTTGCTACTAAAAGACAAAATTTTATTATGTGTAGCATTTCAATGGTGAGTTTAGCTACCTAGCTAGGTATATTCAGAAAAAAGAAGTTATGATGAAGGAGTTCTTTCTGTTCTATAAATAATTGCTGCAACTATGATCATGTTATCATACTTAAAATACAACGATCACTTTCAGAAGAAATTTCTTGTAACATACATGCATTTCATCGAAACCAAACTCATGAGCAGAGTCAATGATTGTTTTGTTTTCCACAACTACTCTTTAACTTTGTACAGCATTGAGTAGTTTTCCATGGCTTGTGTGCATATATACCTACTGAATTTGAATTCGCTGCATTTTATCCATACCAAACTGAAGTAGATGCTTTACATGATAATGACAATGATGATAATCATTAAAGAGAGATTAAATAGTCACATAATTTAACTTTAATTAGCATGCTTTAAGAAAAAAATGCACTAGGTGGCGCGTACGTGATGTCCCTCAAGCCTTTCCCCGTCACTTTTAAATTAAAAGCTTCTTTTTCATCAATTCATCTCAAAGGGGAATATTGTAATTATCTTCATATGCATGCATGCTTTTACTTCCTTTCCAATGCATAATCTTCATCCATATATAAGCCAAGGTTGAGAAAGAAATTAACTACTTAAACCTTTGAATTTTTAGTTTTAATTACATTGTGTATGTGTGTGTCTATATATATATGTAGAATTTCTGATTTCAAATAGATAGATACAAAAAAATGTTAGACCCATCACTTAAGATTAATGATTATTTGCAGCAATGGCCACAGTTAGGCCACAAAAAGGACTAAAGGACTATACTTGGTCAAATATAGTAGGCTTCATTATTTTTTGAAACAAGAAATATAAATGTAACTTTTGAACGGTAAAGATTGAACTAGAGAAATAAAAAGAAACTAAAGAAAATAAAAAGTTTTCCAAGAAAGTTTAACTAAGATCAATTAATTAATGAGCATGAATGTGTATGTACTCTAATTATGTGAATTTAACTCAACTGGACTTAATTTTTGTTGATTTGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGATTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGTTACTGCTGCGCGCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCGAAGCCTTTGAAGGACTTCAGAACCCTCCAAACGCACTACAAAAGGAAGCACGGCACAAAGCCTTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTGAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTATGGTACTGCACTTGTGGCTCAGATTTCAAGCACAAAAGATCACTTAAGGATCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGCTCAATGCTCATCATCATGCATGATCTGATTAACATTCTACAGCTTTTCCTCATTACCAAACAAAAAAGTTGCAGACAAATGTGGTGGATGCAGCTATGGTTTTAGAACCTTGAGTAGTGGTAATTATAGTAGAGAGAGCTTGGTCAGTACCCTTGTGCTCAGTAACAAAAAATTCTCAACAATGCTGAGACATGAAGGCTCAGGGAAAGGTTTGCTACCGAGCACTTGCAGGGTGGTGATGAGCTATCAGTAGAGGTTTGAACTGAATTTGCATGCTTTTGGTTAGCTAATAAGATGGTGCCTCAAGTGATGAAGTAGATGAATTTTCTTGGCATAGTCACAGAGACAAAGTGTTATGTCATGTTTACTTTTCTGTAAAATATGGAGGAAATTTATCCGCTTCATTACTCAATGGTAACCCTCATTCTAGGACTTTATAATACCATGTAAAGTCTTGTTTAAATATTTCTTATGAATTTGCTGTTATATTTCGAT