Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12240	LG3	14347918	14349585	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	heterochromatin assembly, response to water deprivation, cellular response to DNA damage stimulus, response to heat, heterochromatin assembly, heterochromatin assembly, regulation of transcription, DNA-templated, leading strand elongation, leading strand elongation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to water deprivation, leading strand elongation, heterochromatin assembly, heterochromatin assembly, response to water deprivation, leading strand elongation, cellular response to DNA damage stimulus, response to heat, regulation of transcription, DNA-templated
Cellular Component	is active in	epsilon DNA polymerase complex, CHRAC, CHRAC, epsilon DNA polymerase complex
Molecular Function	enables	protein binding, protein binding, chromatin DNA binding, chromatin DNA binding, DNA-binding transcription factor activity, protein binding, protein heterodimerization activity
Pathway	B 09124 Replication and repair	C 03030 DNA replication [PATH:ko03030]

SNP	Position	Effect	Amino acid change
T/A	14348030	missense_variant	p.Glu147Asp
T/C	14348320	downstream_gene_variant
A/G	14348599	downstream_gene_variant
G/A	14348676	downstream_gene_variant
G/A	14348746	downstream_gene_variant
T/A	14349164	downstream_gene_variant
G/A	14349311	downstream_gene_variant
C/T	14349415	synonymous_variant	p.Glu57Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12240.1

MGKEIENGGKRGELDNPNPKFIPVPNSYSKNRMAEAEELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLEEFRKKNVEKKAAVSRGKEDEQRKKRKLETESSDKGEASINDETPDRAEGSDKGEGEEDDE*

CDS Sequence:
>Vu_12240.1

Promoter Sequence:
>Vu_12240::LG3:14349585-14351585(-)

TAAAATATAGAGGATAGTTTTAGAATTTTTTTCAAATGTGGTGGTGTAGGGAGCAATGTGGAGTGGTGTAGGGAGTAACCCTCCTCATTTTTTAATATTCTATGTGCAACTCATTTTTTAGTATTCAATGTGATCTTAATTTTTGTAATTTATGTTCAATTTGATTCTTTTTTTATAGTACAGTCTAAATCGTTAATATGAGTAGTGTGTTGAATGACATGTTCCATTTTTTCTGACGTGGTTAACTCGTCATCTTATTTTCTTCCTAACATTCCCAAAAACCCTAGGCAGCCACCATGACCTCCTCCACGCTGTTAGTCACCATGACACCACTGTTGGTTGTGTCACTACTGTCACCCATTCACGATGACAACCACCACAGATCATATTCGTTCACAATGCCACATCAACAGAATCCATTGAATCATTTTTCCTTCATGAAAACTAGTGCTATCAAAATGCGTTGAAACTCACGAGCCAACCCGGTCCATCATGAGTTCGAGTTGGGTTGGGTTGACAAAAATTTAAACTTTCGATACGGGTCAATTTTGAGTCTAGCTCACTAAGAACCCGATTCACCCGGATTGAACTCATGGTGAGCCAAGTTAGCTCACCAACCCACCTAATTTTTCTAATAAGTACCTTTTTTGTGCTAGTCATTTTACAAAATATTGAAACAGCGGTCTACATGAAATTATTTTTGTATGAAATAATTACGCAACATAAAAAATTCACAAATCTATACTTAGTAACTCAATTTTTATGCAAAAATAAATTTGAATCTTTATGAAGCCATTAAAAACTTTGTTGAAGAGATTTTGTGGTATTTTTCATTTAAGACTTTTCTCCTTTATTTAGATTTGAATTAGAAAAAAATTGTTATTTTTATTGAAATTGAAAAGAAAAAACATGTAATTAAGTAAGTTAGTGAGACAACCCATTAAACCCACAAACCTATGATAAGTCGAACCAAGTTCAAATTTGTTTGGTTCACCAATAAGTGAGTCGAGTTGGGTTGACTCACTAAGTGGCCAACCCATGGTAGGTCGAGCCGGGTCGGGCCAGATGATCCGTTTTGACAGCATTAATGAAATCCCCAAATTGTGAGTTACCACAAACCACGACAACCATCAACCACAAATGCAAATTCATGCCATCAAACACCACAAATATGCAACGAGGCCACAAACCTGCAAGTCCACCGCAAATAGTGAAGATCAATCACCTCGAGAACAAGGAATTAACCAACAAACCCTAATGGCAATATCACACAATGAAAGCCTTAAATTGCGCCACCTAAATCGAAACAGAAACTTAAAAATCATAAGCATAAATCGTGACACCACCATCACGAAAATCTTAATGTTGAGAGTGATTCTGGATTTGTACTATGTATGATTTGCAATTAAGGGTTTCGAGAAGATGGATTCCCATTTTGCGTTGAAGGCACGAGATGATTTGTGATTTCTCCTAACTAATAATGCACTCACGATGGTGGTGAAATTAGATGTGGTAGAGGAACAAAAGATGGTAACTCAAATGGTGGTTGCATTCACTATAATGAAGGAATGATGTCACATGACTACCTAAGCAAGTGTGCAAAATGACCACATTAGCAACAATCTAACATCTCATTCAAACACGGTCCACGTGTCTAGTTTGTTATTAACTATTTAAATGTCGTTATGAACAAAAAAAACTAAATTAAACATAAATTACAAAATTTAGATTGAAATTAAACAAAACCAACAAAATAAAAAAGGAAAAAAATATAATTATAAATATAAACACAAGAAATTTTGTTTGTCTATAAGTAGATATATTTTTTTTCTTCTAAACTTAACTGTGATACATAGATATCTTTCCTCAAAACTTTTAATTATTGTTTTATTTTATATTCATCTACAAATATAGATTTTCTGATATTTTATCTTATTTGTGTGCATTAAATATAAATTTTAATTTTAATAATTACAATTTATCACCATGCCGCGTATTGC

Gene Sequence:

>Vu_12240(-)

ATGGGAAAAGAAATTGAAAATGGCGGGAAAAGAGGTGAACTAGATAACCCTAACCCTAAATTCATCCCAGTTCCCAATTCCTATTCGAAGAACAGAATGGCTGAGGCGGAGGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAAACTGTCCCGATGCTCTGAGGAAGGAGAAATTTCTGTCAGCAAAGATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGTAAGCCCTCGAACCCTTCCCCTTAATTAATTTCAATAAAAATTCTCAATTTTGATGTTTGAATCCGTTCTCCCCTACTTAGAAAACCTAGGACTCGAATTAGATAATTGATAAATAGATTATTTGAACAGTGGAACAAAGTAAAAATGAAGAAAAAAAAGATAGAAAAAGCATAACAGTGATCGAAATTTTTATGGAATGATATGGTATGAATGTGTGTGACCTTAGCTGATGTGATGAGTGTGGTTTAGGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTGTCAGTGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCTGAGTTTGTTCGCCCTCTAAAAGCTTCCCTTGAAGGTAGATTACTTTTAGTCTCTTAAAATGTTTTGTTTTGTTAACACCAAAGATCAGGTTCTATTTGCTGTGATTCTTTTTTGGAACTTGTCAAATTCTTGTGAAATTACCTTGTTTTAAAAGTCAGAACATTGTGACATAACGAGATACTGAGAGGAGCAAATTGGACCAAAAGTTGTATGAAGATAGTATGACCACTTAAAATCATGGCTAATATTCGTTTCTTTCAGTCACTCATAATGAAAATCCTCTCACTTGATATGTTCTCTCTCTATGGGGAGAGATGAGCCATATGAGAGATATATCACTTAATCTAAATTATATGTCCAACTTTGACATTCTTCTTATTGTAATTTGTTTGACTCTTTTATTGAAATTAAGTATTTTTCATTTTATCAGCTTCAACATATAATCCTGGCTTGTTAACTAGTTTGTTCTTTGCAATTGTCCTAAAAGCACGATTGGGTAGTCTACTGGCAAGTACTAGGTTCGAAGATATGAAGTGGAGCCTGAGGATTAGTTACTTTTAGTCCATGTTTGGTCGTGTATTGTCTAGTTAACTGTGGATACATGATTCACTTTCAAATTGAAGCTCCTCTAAATAGTTTTAATTTTTTTACCAGCGGGAGACTAGATGAGGGATTATACATTTGAAACATTCAAGACAATACTTTGTAATGTTTTGCATGAGTAATTTCTAATAAGATTATGTCATTTATTTTTCATATTGGAAATACCTGATATATGAAGTTTTATATTTGTATTGATTTTACTAGTGATTGCACTTGACAGACAGTTAGTTTTAAAAGGTAATTTTATGTGCCTTTGTATTTGTAGCCTAATACTTTTTCTTCGTTGTTAGCAGAGTTTAGGAAGAAGAATGTTGAAAAGAAAGCGGCAGTGTCAAGAGGAAAAGAAGATGAGCAGAGAAAGAAAAGGAAATTGGAAACTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGATGAGACACCTGATAGAGCGGAGGGTTCTGATAAAGGTGAGGGCGAGGAGGACGATGAATAA