Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12072	LG3	9982828	9985668	PREDICTED: uncharacterized protein LOC108332694	Map

Annotations

category		relationship type		keyword
Pathway		B 09159 Environmental adaptation		C 04626 Plant-pathogen interaction [PATH:ko04626]

SNP	Position	Effect	Amino acid change
G/A	9982861	missense_variant	p.Glu12Lys
T/G	9982908	missense_variant	p.Ile27Met
A/G	9982997	missense_variant	p.Asn57Ser
C/T	9983101	missense_variant	p.Arg92Cys
A/T	9983121	synonymous_variant	p.Ser98Ser
A/T	9983131	missense_variant	p.Ile102Phe
C/T	9983152	missense_variant	p.Pro109Ser
C/T	9983153	missense_variant	p.Pro109Leu
C/T	9983155	missense_variant	p.Leu110Phe
A/C	9983298	synonymous_variant	p.Gly157Gly
A/G	9983373	synonymous_variant	p.Glu182Glu
A/G	9983406	synonymous_variant	p.Glu193Glu
A/G	9983412	synonymous_variant	p.Thr195Thr
G/T	9983435	missense_variant	p.Gly203Val
G/A	9983443	missense_variant	p.Gly206Arg
C/T	9983459	missense_variant	p.Ala211Val
C/A	9983464	missense_variant	p.His213Asn
C/T	9983466	synonymous_variant	p.His213His
T/G	9983469	synonymous_variant	p.Val214Val
T/A	9983471	missense_variant	p.Phe215Tyr
A/G	9983474	missense_variant	p.Asp216Gly
A/G	9983491	missense_variant	p.Ile222Val
C/G	9983500	missense_variant	p.His225Asp
C/T	9983502	synonymous_variant	p.His225His
A/C	9983526	synonymous_variant	p.Ser233Ser
T/C	9983530	missense_variant	p.Ser235Pro
G/A	9983562	missense_variant	p.Met245Ile
A/T	9983571	missense_variant	p.Gln248His
C/T	9983736	synonymous_variant	p.Pro303Pro
A/G	9983924	missense_variant	p.Glu366Gly
A/G	9984026	missense_variant	p.Gln400Arg
A/G	9984079	missense_variant	p.Arg418Gly
G/A	9984132	synonymous_variant	p.Lys435Lys
C/A	9984161	missense_variant	p.Pro445His
A/C	9984171	synonymous_variant	p.Ser448Ser
G/A	9984216	synonymous_variant	p.Gly463Gly
G/A	9984243	synonymous_variant	p.Leu472Leu
G/C	9984305	missense_variant	p.Trp493Ser
A/T	9984356	missense_variant	p.His510Leu
T/C	9984404	missense_variant	p.Val526Ala
T/G	9984405	synonymous_variant	p.Val526Val
C/T	9984437	missense_variant	p.Ala537Val
A/G	9984441	synonymous_variant	p.Ser538Ser
A/C	9984474	missense_variant	p.Lys549Asn
A/T	9984821	missense_variant	p.Tyr665Phe
T/C	9984822	synonymous_variant	p.Tyr665Tyr
A/C	9984828	synonymous_variant	p.Ala667Ala
G/A	9984873	synonymous_variant	p.Lys682Lys
T/A	9984876	synonymous_variant	p.Gly683Gly
A/G	9984911	missense_variant	p.Tyr695Cys
G/C	9984922	missense_variant	p.Glu699Gln
A/T	9984948	missense_variant	p.Gln707His
G/C	9984956	missense_variant	p.Arg710Thr
A/G	9985155	synonymous_variant	p.Glu776Glu
A/C	9985195	missense_variant	p.Lys790Gln
C/A	9985274	missense_variant	p.Thr816Asn
C/G	9985278	missense_variant	p.Ile817Met
C/T	9985293	synonymous_variant	p.Tyr822Tyr
A/G	9985364	missense_variant	p.Asn846Ser
T/C	9985416	synonymous_variant	p.His863His
A/C	9985469	missense_variant	p.Asp881Ala
A/G	9985509	synonymous_variant	p.Pro894Pro
A/T	9985536	synonymous_variant	p.Pro903Pro
A/C	9985537	missense_variant	p.Lys904Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12072.1

MAEAAISFALGEVFQILKEEKSLLSGINKEFLDIRDELESIQAFLKDADRKAADEANTNDGIRTWVKQVRQVSVRIEDVIDEYLRVIHQVPRHGFGASICKITNLIRTPLSRHQIAVEIQDIKLSLSLIKERSERYKFQVLQEKPSSSSTGRIEGSGWNDHRMGSLFIEETEIVGFELPRDELLSLLLEGKKERTLISVVGMGGLGKTTLAKHVFDSENVKIHFHCRACITVSQSYTVRGIFTDMIKQFCRETKDPLPEMLEEMDEKTLISELRQYLEHKRYLIFFDDVWHEDFCDQVELAMPSNNRSSRIIITTRMIHVVEFFKKSFPLHVHNLQPLPSDKAWELFCKKAFKFELDGQCPAELKEMSNEIVGKCKGLPLAIVAIGGLLSTKSKTVFEWQKVSQNLNLELHRNAHLTRLTKILSLSYDDLPYYLKPCILYFGIYPEDSSINHKRLTRQWIAEGFVKSDGRTLEQVADEYLSELIYRSLVQVSWVGFEGKVKSCRVHDLLHELIVRKMKDLCFCHFVHEGDDESATSASTRRLSIDTSIKNVLKSTNFTHIRALHAFGKGGTVEPFTGLLASKSRVLKVLDLESTSLNHVPRNLGNIFHLKYLNLKNTKIRSIPKSVGRLQNLETLDIRETLVHELPSEINKLKKLRHLLAFHRNYEAEYSLLGFTTGVLMKKGIKNLTSLQNLCYVEVEHGGIDLIQELRFLKQLRKLGLRRVRREHGKAICASVAEMTHLESLNITAIGEGEIIDLNSISFIPQLQRLHLKTRLERMPNWISKLEFLVKMRLALSNLKDDPLRSLENLPNLLKLTIWDNAYGGEILHFQSGGFRKLKELNLARLNTVSAILIDKGALLSLEHVKITKITHLKKVPSGIKDLYNLKVIDFCDMPTELVESIDPKNGQDYWIINHVPLVFIRRWVGPKLNDFEVRIVHSSTKESLTN*

CDS Sequence:
>Vu_12072.1

ATGGCAGAAGCTGCGATTTCTTTTGCATTGGGAGAAGTTTTCCAAATTCTAAAGGAAGAAAAAAGTCTTCTAAGTGGCATTAACAAAGAGTTTTTAGACATCAGAGATGAACTAGAAAGCATCCAAGCCTTCCTCAAAGATGCAGATAGAAAGGCAGCAGATGAAGCAAACACCAATGATGGAATAAGAACTTGGGTAAAGCAGGTCAGACAAGTGTCAGTTCGCATAGAAGATGTCATCGATGAATACCTCAGGGTGATTCATCAGGTCCCCCGTCATGGATTTGGGGCTTCAATTTGCAAGATTACAAACCTGATAAGAACACCGCTTTCTCGTCATCAGATCGCCGTCGAGATTCAGGACATTAAATTGTCACTTTCTTTAATCAAGGAAAGAAGTGAAAGGTATAAGTTTCAAGTTTTACAAGAAAAACCATCAAGCAGTAGCACTGGAAGGATAGAAGGAAGTGGATGGAATGATCATAGAATGGGTTCCCTTTTCATTGAAGAAACGGAAATTGTAGGATTTGAATTACCAAGAGATGAATTGCTTAGTCTGTTGTTGGAGGGCAAAAAAGAACGCACATTGATTTCAGTGGTAGGGATGGGGGGTCTTGGAAAAACTACCCTTGCCAAACACGTTTTTGACAGTGAAAACGTAAAAATCCACTTTCACTGCCGTGCTTGCATCACAGTTTCACAATCATACACTGTGAGAGGGATATTCACAGACATGATCAAGCAATTTTGTAGGGAGACAAAAGACCCTCTTCCAGAAATGTTAGAAGAGATGGACGAGAAGACGCTGATTTCTGAATTGAGGCAATACCTGGAGCATAAAAGGTATTTGATATTTTTTGATGATGTATGGCATGAAGATTTTTGTGACCAAGTTGAACTTGCCATGCCCAGTAACAATAGAAGTAGCAGGATCATAATCACCACTAGAATGATCCACGTTGTTGAGTTTTTCAAGAAATCCTTTCCTCTTCATGTTCACAACCTACAACCATTGCCTTCTGACAAAGCATGGGAACTCTTCTGCAAGAAGGCATTTAAATTTGAGCTTGATGGTCAATGTCCGGCAGAGCTTAAAGAAATGTCAAATGAAATTGTTGGAAAATGCAAGGGGTTACCTTTGGCGATTGTGGCCATTGGTGGTCTACTTTCAACAAAATCAAAAACTGTGTTCGAATGGCAAAAGGTCAGTCAAAATCTCAACCTGGAGTTGCACCGTAATGCCCATTTAACTAGATTAACAAAGATTTTATCTCTTAGTTATGATGACCTGCCTTACTATCTGAAGCCATGCATATTGTATTTTGGTATATATCCTGAGGACTCATCCATTAATCACAAGAGGTTAACTCGGCAATGGATAGCTGAAGGGTTTGTTAAATCCGATGGGAGAACTTTGGAGCAAGTTGCGGATGAGTACTTATCTGAGTTAATTTATAGAAGTCTGGTTCAAGTCTCCTGGGTTGGGTTCGAAGGGAAAGTTAAAAGTTGTCGAGTTCATGATTTATTACACGAATTGATCGTAAGAAAAATGAAGGATTTATGTTTTTGCCATTTTGTTCATGAAGGTGATGATGAATCAGCGACGAGTGCATCAACTAGACGCCTATCTATAGACACCAGTATCAAAAATGTGTTGAAGAGCACCAACTTCACACACATCCGTGCACTTCATGCTTTTGGAAAAGGAGGAACGGTTGAGCCTTTTACAGGTCTCTTGGCTTCAAAGTCTAGAGTTTTGAAAGTACTAGACCTTGAAAGTACATCTTTAAACCATGTTCCCAGGAATTTAGGGAATATTTTCCACTTGAAGTACCTAAATCTAAAGAATACTAAAATACGGTCTATTCCCAAATCTGTTGGTAGGTTACAGAACCTAGAGACCTTGGATATAAGAGAAACTCTTGTTCATGAGTTACCAAGTGAAATAAACAAGCTCAAAAAGTTAAGGCATCTTCTTGCTTTCCATCGAAACTATGAAGCAGAATATTCTCTTTTGGGATTTACAACTGGTGTGCTGATGAAAAAGGGTATAAAAAACTTGACTTCCCTTCAAAATCTTTGCTATGTGGAGGTAGAACACGGGGGAATAGATCTGATTCAAGAGTTGAGATTCTTGAAGCAGTTAAGAAAGTTAGGCTTGAGGCGTGTTCGGAGGGAACATGGAAAAGCAATCTGTGCTTCAGTGGCAGAGATGACACACCTTGAATCACTCAATATCACAGCAATAGGTGAGGGTGAAATCATTGACCTGAACTCTATATCATTCATACCCCAACTTCAACGGCTTCATTTGAAAACAAGACTGGAAAGGATGCCTAATTGGATTTCAAAACTAGAGTTTCTTGTTAAGATGAGGCTGGCTTTATCCAATTTAAAAGATGATCCGTTGAGATCGCTGGAAAACTTGCCTAATTTGTTGAAGCTTACTATCTGGGACAATGCCTACGGTGGTGAAATCTTGCATTTTCAAAGTGGAGGGTTTCGAAAATTGAAGGAGCTGAATCTGGCTCGCTTGAACACAGTAAGTGCTATCCTCATAGATAAAGGAGCTTTGCTTTCTCTAGAACATGTCAAAATTACCAAAATCACTCATCTGAAGAAGGTACCCTCAGGCATCAAAGACTTGTATAACCTTAAAGTTATTGATTTCTGTGATATGCCAACTGAACTTGTTGAGAGCATTGATCCAAAAAACGGCCAAGATTATTGGATCATCAATCATGTTCCACTTGTATTCATTCGTCGTTGGGTGGGACCAAAACTCAATGATTTTGAAGTCCGCATTGTTCACTCGTCTACTAAGGAATCGTTAACAAACTGA

Promoter Sequence:
>Vu_12072::LG3:9980828-9982828(+)

ATTTATAATGCTATTCTGAATATGTTTTTTCTTTCTGTTTGTTTTCTATATTCTGAATTTGTCCATTTCATCAATCAATCTTCCCTAAACGTTTATTCTCACATTTTTCAAACAAAACTAAGGTTTATGCATGCTTAACTACCTACTTTAAGAAATCAAGAATATATATTTCTAATTTGTTGATAGTAAAACTGCAAAAATTTGGAAATGATCCATGTTTTTTTGTTCAAAATTTTAAATTGATTCTGCACATTCTGAAGTCATAGTTTTTAATTGACTGCATGAATGAGTTGTGTACTTTTTAACTCTGCCTTTGCAATCCATTGTGTTTGTGTTAAATTCTAATATTTATTTTCATCAACCCACATTTACACTTGATGTCTATTTTTGAAAATTTAGTTTACTATCTTTCATGCTGTAAAAACTTGTAAAAATGTTTTTTTAGTTAATTTCTTGCACCTATACTGCTCAAACTTACTATTTGTTGTGGCTTTGTTGACAGAAATTCAAATTTGCCCGTATTGCATAATGATGAACTTTGTCTGTTCATTCCTTTCATGTAGCTTGAATCTTCGAATAAGTTGTTCATATTTCCTTGAACACATCCTGCTTCACACAGGGAATATGTGAACTCCGTGTGAATTTGACTTTTGTACGATTCCATCTAGCACGTTTCATTAAGAATTATGAATTTGTATGTGTTTTTCTTTATATATTTCTCTAAGGTTAGGTGTAATTCATTACTGCTCATCAACTTGATATCATTTTTATTAAAAAATGGATTTTAAGTCTGGCTTATAAAGTAAGGTTTGGATCTACTTATATATTTTAAATTGGCTTTGTTTCTAGTTGATGTGAGACTTTCAACAATCTTCATAATGAAAGTGCTTCTTTGTTCCTCATATAATAACGTTCACCACCAACCATTCACATTACAAGCTTCTGGTTCCCACCAAATTTGAAAGCAATGATCATAATTTTGAGTAAAAAAATTGAGAAATTTACGTAAAGCTACAGAAAAAGGCAAGATGCACCAACTAACTAACACCAAACAAAATATAAATAGTGAAAGTAACCACATTAACGAAACAAAACGCAACTGAAAATGTACTCCAAAAGAAGACAACAAAATAGGTCGGACACGAATATTTACTCAAAGAATATAAGAACTATTGCTAGGAAAAAGAGCTCTAAATGGTTTATATAAAAAGGGTTACAGTGAAAAAGGTGCTTACAACAGAGTTCATGAGCATTTTCACTTGCACATAATCCAGGGGATGCCAATGATATCCAAACCGATATCCACTTGAGCAGTCCTTTGATGAAATTTTTCTAGGAATTCAGGAACACCAATTTTACTGGTCAAAATCCATTTTCAGTACAAAAATTGGAAACTTGCTTAGAAAACTGATAATTTCATAATAAACTGGTAACTAGAACTTAATCTACTCTGTTACCTGAAATGATTAAGCTTGCTCTTTAAGAATTTATACTGAATAAGTTCCACTCCAACTGTAAATAAGTTCATGTCTGAGTAATCTTCTGAATGAGTATTTATATAATATGAAATGAAAAATAAAACGAGTAGAGATTCTCCAACTCACAAATTGTTTAATCTGAACAAAAAACGGAATACTTTCATTATTGTTATAATAAAATAAGGACAAATTAATCGTTTTACATAAATGGGAACACAGAAGAAATCATGATGCAGGAGTAAAAAAGCATCAGAGGATCCCATGAAAGTCCTGAATTACGGTATAATAAACTTCAATAGAAAAAAAAAAAAAGCCTGGTCATGGTGTTAAACAAAGAAAATTGGTAGCCCTCCAACAACTGTACACGTTCCTCTTCGTTGACTTTAAAGATTAAATTTCCTTGCGGCATTCACAAACAGTACACCCAAGAAAGAAAAAAGGCAAGAGGCACCATATCTCTGAAATGCTTATGCTGGATACATGAGAGCAGCATGATTGTAAGGTGAGAGAGTACGACTGAAA

Gene Sequence:

>Vu_12072(+)