Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12064	LG3	9902485	9903381	PREDICTED: zinc finger protein 3-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	9902521	synonymous_variant	p.Ser287Ser
G/A	9902575	synonymous_variant	p.His269His
C/G	9902616	missense_variant	p.Ala256Pro
C/T	9902673	missense_variant	p.Ala237Thr
T/C	9902812	synonymous_variant	p.Ser190Ser
C/T	9902827	synonymous_variant	p.Lys185Lys
G/A	9902881	synonymous_variant	p.Phe167Phe
T/G	9902890	synonymous_variant	p.Thr164Thr
A/G	9902899	synonymous_variant	p.Tyr161Tyr
C/G	9902927	missense_variant	p.Gly152Ala
T/C	9902965	synonymous_variant	p.Leu139Leu
C/T	9902988	missense_variant	p.Ala132Thr
T/C	9902996	missense_variant	p.His129Arg
T/C	9903143	missense_variant	p.Asn80Ser
G/T	9903275	missense_variant	p.Thr36Lys
G/A	9903346	synonymous_variant	p.Ser12Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12064.1

MASSRDLEDYSSEASSTSQDIHKSNAEEGKKHEVTTMKEKGIKFEESKVSNSKTHMVLDFVKFSNDQTLCGSKVELDFFNAKGSSSRANHTQGRDEHNKEEKPSSETNKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGAFGNPHFLYYPYNPTHSFYGSYNRALGVRMESMIHKPMYPSSSSLGLRFGQGLLRQETMNSSSCSSSAVGLQANAGIKIMGSDTTFRAQRDHGNIRHSIPFLAESSANVTAKTNLTPLNHVEDNDNDRTKKEGTSNPSSSDEIDLSLKL*

CDS Sequence:
>Vu_12064.1

ATGGCATCTTCACGGGATTTGGAAGATTATTCATCCGAAGCCTCAAGCACCTCACAAGACATTCATAAATCTAATGCTGAAGAAGGGAAGAAGCATGAGGTGACAACAATGAAGGAGAAAGGTATCAAATTTGAAGAAAGTAAGGTTTCCAATTCCAAAACTCACATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAAACACTTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATGCCAAGGGTTCATCTTCTAGGGCAAATCACACTCAAGGAAGAGATGAACACAATAAAGAGGAGAAGCCATCATCAGAAACCAACAAGACCTTTTCCTGCAACTTCTGTCAGAAAGAGTTTTCTTCTTCACAAGCATTGGGAGGACACCAAAATGCCCATAAACAAGAACGTGCTCTAGCAAAACGAAGACAAGGGATTGATGGTGGTGCTTTTGGAAACCCTCATTTTCTCTATTACCCTTATAATCCCACACACTCTTTCTATGGATCTTACAATAGGGCACTTGGGGTTCGAATGGAGTCAATGATTCACAAGCCTATGTATCCTTCATCTTCTTCACTAGGTTTAAGGTTTGGTCAAGGGTTGTTGAGACAAGAGACGATGAACTCTTCTTCTTGTTCTTCTTCTGCTGTTGGTTTGCAAGCAAATGCTGGAATCAAGATTATGGGGAGTGACACAACTTTTAGGGCACAACGTGATCATGGTAATATCAGACACAGTATTCCATTCCTTGCAGAATCTTCTGCAAATGTTACTGCCAAAACAAATTTGACTCCATTGAATCACGTGGAAGACAATGATAATGATCGCACCAAGAAAGAAGGAACTTCAAATCCTAGCTCTTCAGATGAAATTGATTTGTCACTTAAACTTTAG

Promoter Sequence:
>Vu_12064::LG3:9903381-9905381(-)

AAATACTTTTTAGATATTCCAAAATTTCAATCCTTTTTAATATTATCATCCAAGCAACTTATTTTAGTCCAAGAAGTTTTTAAATTCACCAATACATAAATTATTCTCTTAAAGTAACTCAACCAAAATAATCATTATTAGAATAAATTATGAAAAATAATAAGATATATTTTTAATTGTTGTAATTTTTATCCTTAAAATATTCATTATTCAATAGCGTAGTATTCATAATTAATGATTTGTATGCCTAACCCAAATCAATGTTATTAGTATAAATTGATAATGTAGTGAGTATTTAAAAAATATCATAATTATATTTTATGTAAACATTTTTTTAATCATAACCATCAATATTAAAATAAACTATGAATTAATATTTGGTAATATAATATTTAAAATACTTATTATAAAATTAAAACTTACCTTGTATATACGAACTTGTATGTGATCATATGAAAACATTTTATTGTAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACTATTTATGCTAACAATATATAATAAAAAAAAGACATGTGCAATATTGGGTGTAAACCTAGCTATAAATAAAATTCACTTGTTGAATCATCTTTCAATTATTTCTCATTAAAAAAAAACTCTCCTTAGTTATCAGTACTTAAATAGAAAACATTCCTCAAGTTTTAGCATTATTTACTTGTGTGTTATACTTTATTAATTATACAAAATTTTACAAATTTCTATTGTCTCAATTTTTTAATGTTACAAAACTGTGCTCTTCATACAAAATGAACATCCACAAATGTAACTGAAATTAAAAAAAAAATGTGGATTATTTACAAATTAGACCCACTAAAATTGTCATAAGTTCTTCTTTGAAAATCAATGACATGAATATTATTGTAATTAAAATAGGAATTTGTGTGAGTCATTGGAACTAAAATCTACAAATTATTAGGACCATTGAAATTTTGTTCATTAGTCCTTAATAATGAACTTGACAAGAATTTTACTGATTTTTTTTTTAAAAAAAAGGGGGTTAATTCTTGAAACTAAGCCTAAGTAATTACATGTTATGAAATTGTGGTTTAATTGAAACTAAAACAAAAAGATGCATGTTTATTAAAATAATTAGTAGTATAATATGTTATTTAATAGTTTGATATATATGGCTTAGGTAATCATTCAAAATTATGTAAATTAGGGGTTACAAAAATATTTGAAATATTTAAACTTGCTAGGAAATCAAGGGATTGTGTTTATGACAATATCAAGCATTAATGAAGCTAAAATTACATCACAGAATTACTTCCATTAATTTCTCCACCAAAGGAGCTTTTTTGAATGCCCAAGTAATTTTAATTCAACAAGTAAATTCAAAGTTTCCATTTTTGCTTTGACATCAAATTTGAACTACATAGAAGTAGAGATGGTATATTATTTGAGTAATTAGCCACATTCTTGCCCCTAAAAGATTTGAACTATTTAAGTAATTATTCATCATATTAGACTGTGTAATTAAAATCATTAAGCCAAAATTATATCCCAAAATTTTTTCCATATATTCATCTCTTTAAATGGAAACTTCCCAAGTAATTTTATACTTTAAAACAAGTAATTTGCAATTTGGTTTGACTTAAAATTTGAACTACACTGAAGCTATTTCAACAATTAACCACATGTCAATTATATCCTGATTTAAACTACTTGAGTAAATAACACACTACAAGGTGCAGTTAAATCCAATTTAGGAATTTTCTGTGTGCAAAGATCATGCACAAATTACTCAAAACCTTGTTTAAACCTGTTCAAACTTTTTATGCTAAATAGTAACTGCAAAACACATGAGATCTCATTCCTTATTCATTAAAGATATTTGCATTAAGACATATATGTTTAAATAAATAACCATAGTCATGTTTCTCTCTATTCAATCACTTCCACAAATTTCAAAAAGATTCAAAAGAAATATTTCTTTTCCT

Gene Sequence:

>Vu_12064(-)