Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12041 LG3 9453551 9454584 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 9453573 missense_variant p.Leu201Pro
T/C 9453582 missense_variant p.Asn198Ser
A/G 9453586 missense_variant p.Cys197Arg
T/A 9453591 missense_variant p.Asp195Val
C/A,* 9453619 missense_variant p.Asp186Tyr
C/A,* 9453651 missense_variant p.Gly175Val
C/T,* 9453652 missense_variant p.Gly175Arg
C/T,* 9453655 missense_variant p.Ala174Thr
A/G,* 9453666 missense_variant p.Val170Ala
C/T 9453668 synonymous_variant p.Thr169Thr
C/A 9453675 splice_acceptor_variant&intron_variant
A/G,* 9453679 splice_region_variant&intron_variant
T/C 9453792 splice_region_variant&synonymous_variant p.Leu166Leu
T/C 9453804 synonymous_variant p.Glu162Glu
C/T 9453806 missense_variant p.Glu162Lys
T/C 9453851 missense_variant p.Met147Val
C/T 9453868 stop_retained_variant p.Ter141Ter
C/T 9453878 missense_variant p.Val138Ile
T/C 9453885 synonymous_variant p.Gln135Gln
G/A 9453887 stop_gained p.Gln135*
C/T 9453900 splice_region_variant&intron_variant
C/T 9453905 intron_variant
C/T 9453929 intron_variant
A/C 9453931 intron_variant
T/C 9453935 intron_variant
T/G 9453936 intron_variant
A/G 9453948 intron_variant
T/C 9454013 splice_region_variant&intron_variant
G/A 9454017 intron_variant
C/T 9454018 intron_variant
A/G 9454020 intron_variant
T/C 9454032 intron_variant
C/T 9454050 intron_variant
A/C 9454053 intron_variant
A/G 9454056 intron_variant
C/T 9454062 intron_variant
C/T 9454065 intron_variant
C/T 9454080 intron_variant
A/C,* 9454092 splice_donor_variant&intron_variant
C/G 9454157 synonymous_variant p.Arg96Arg
A/G 9454160 synonymous_variant p.His95His
C/T 9454183 missense_variant p.Ala88Thr
G/A 9454190 synonymous_variant p.Ala85Ala
G/A 9454200 missense_variant p.Ala82Val
C/T 9454201 missense_variant p.Ala82Thr
A/G 9454203 missense_variant p.Val81Ala
C/T 9454204 missense_variant p.Val81Ile
T/C 9454212 missense_variant p.Glu78Gly
A/G 9454219 missense_variant p.Ser76Pro
A/G 9454228 missense_variant p.Phe73Leu
G/A 9454244 synonymous_variant p.Cys67Cys
C/T 9454251 missense_variant p.Arg65Lys
A/G 9454257 missense_variant p.Val63Ala
G/A 9454264 missense_variant p.Arg61Cys
G/C 9454311 missense_variant p.Ala45Gly
T/G,* 9454315 missense_variant p.Ser44Arg
A/G 9454328 synonymous_variant p.Cys39Cys
C/T 9454329 missense_variant p.Cys39Tyr
T/C 9454339 missense_variant p.Thr36Ala
C/A 9454342 missense_variant p.Ala35Ser
C/G,* 9454351 missense_variant p.Gly32Arg
C/T 9454353 stop_gained p.Trp31*
C/T 9454359 stop_gained p.Trp29*
A/G 9454360 missense_variant p.Trp29Arg
T/A 9454362 missense_variant p.Gln28Leu
T/C 9454374 missense_variant p.Lys24Arg
G/A 9454376 synonymous_variant p.Tyr23Tyr
T/C 9454394 synonymous_variant p.Gln17Gln
G/A 9454420 missense_variant p.Pro9Ser
C/T 9454451 intron_variant
G/A 9454479 intron_variant
A/G 9454517 intron_variant
G/A 9454520 intron_variant
G/A 9454573 synonymous_variant p.Phe4Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12041.1
MTLFRDPNPPVVLSENQLEKKHYKGVRQWPWGKFATEICDPNKSASRVWLGTFDTTKAYDRVVFRLCGSKAIFNFSLEAGVAEEAADAEGERKQHREEEEVEEVKPVVKKEKTTDQETTRTPAWLSLATGGCSCAMTRWGLIHCAPYVRDKEFVKLFPDLVRTGYLRGWTVQNTAGWKSGELDATLDLNEHGKGMDLCNINLNHLGKK*


CDS Sequence:
>Vu_12041.1
ATGACCCTTTTCCGAGATCCCAACCCGCCTGTGGTATTGTCGGAGAACCAACTGGAGAAGAAGCACTACAAAGGAGTCCGCCAATGGCCTTGGGGAAAGTTCGCCACCGAGATTTGTGACCCGAACAAGAGCGCGTCGAGAGTGTGGCTTGGAACCTTTGACACCACCAAGGCCTACGACCGTGTTGTCTTTAGGCTTTGCGGCTCAAAGGCTATCTTCAACTTCTCGCTTGAAGCAGGCGTAGCGGAGGAGGCCGCCGACGCCGAAGGCGAAAGGAAGCAGCATCGGGAGGAGGAGGAGGTAGAAGAAGTCAAGCCGGTTGTGAAGAAGGAGAAAACAACGGACCAGGAGACAACGCGAACACCGGCGTGGTTAAGCTTGGCAACGGGAGGGTGTTCGTGTGCAATGACTCGTTGGGGTCTGATTCACTGCGCACCCTATGTGAGGGATAAGGAGTTTGTGAAGTTGTTTCCAGATTTGGTGAGAACAGGGTACCTTAGGGGTTGGACGGTTCAGAATACCGCTGGATGGAAGTCTGGAGAACTAGACGCAACATTGGACCTAAATGAACATGGGAAAGGCATGGACTTGTGCAACATAAACCTTAATCATCTAGGAAAGAAATAA


Promoter Sequence:
>Vu_12041::LG3:9454584-9456584(-)
CGGATAGTGCCTACCCGCAACCCGACCCGACAAAAAAAAATCCACCCGCTACCCGACCCGCTACCCGCACGGATACCCGCTTAAAAAATATCCGCGGGTATTTTAAAACCTGCGGATATCCGCGGATACCCGCAAATATTAAAAAAAATATATTTTAATAAATTATTAAAATAAAATTTAAATAAAATTATAAAAAATATATAAAATATAATATAAATTAAATTAAATATAAATTTTAATTAAATTTAATATTGTAAAATATAAATTAATGTTAATTTTAATTAAATTTAACTTAATAAAATATAAATTAAATTTTTATTTTTATTTTTTGCGGGTAGTGGGTATCCGCGGGTATGGATAGTATAATATCCGCACCCGACCCGATTATAAGCGGGTATTAAAATATCCGCTACCCACGGGTTGCGGGTAGTAAATATCCGCGGGTATCAACTATCCGTCGCGGATTTTATCCGCGGATATCCGCGGGCGCGGATTTTTTTGCCATCCCTAGTAATATCAACCACATAGTATACCAAATTTCAACATATCAAGCATAAGTGACAAACCAAAATCGTACTCAACTCCACGTGTCATATTTCATCAAACAACTCAATTACACAAACCAATTATCGCACAAGCATATTTTCAACAATTATAAGTTATATATCAGTTAAAAATAATGAAATTAGTTTTCCTTATCTGATAGATGAACCAAACACTCAAGGAATCCTATAGACTCCTCCAAATGCACAAGAAACCCTATATACTAATATGAACAACACAAACATGATCAAAGCACACCATTAGGACCACTGATCAACAAAGATTCTTATAGAAGACTCAGACACTACATGCGAGCCAAGGTAGCTGACATGTGCCAAAAGAACATAAAAAGGAGTAGAAAACCAACTTATTCTATTTAAGAAACTTATTGGATATAAGTGGAGAGCTTGTCTCAAGGATCACCTTAACGGTCTTCGATTTTCAAACAAATGCGCAAACAATAAAAAACTTAGACAAAAGGAGGATAGCTCTAGAAGGAAAAAGGTTTTAGAGAGATGATGTACTTTTAAATAATAAAATTCGTTAAAAAATTATATTTGTAATTTAAACTTTTATTATTAAAATAATTAAGTCTCATCATTATAAACACATTATCAAATCTAAAATACAATTTCCTAGATTATTACGTTATAATTAATCATTGAATATAAAAGAAGTATTAGTCCATTTGAATATTTTTATTTTGGTTTCTAAATCGTTTTCATTTTCAATTTCTTATTAATTTTTACCAATGTTTCTATTAATTGAAAGCCAAACACTCTTCATTTGGTAAATCGTATTTCTAATATGAATTTGATAAATTATTTATAGATAACCATTTTATAAAAAAAAATTCTAATCTATTTATAATTTAAGGTAAATTGAAATATCATTTGAGTGACTTACACAAATTTATTTACAACTCCAATACAATGAATTAGAAGTAAACATATACTACAACAATTTTCATAATTACTAATGAAAATTTATCAATGAAAATAATTTCGTCGATAAAATCACTATATCAGTGAATTTTATCGACATATTTTACAATTTAAATTACTAATAGAAATATCTGTCGAAAAAATAGTTAGTAACGAAAATTTATATTAATAACATATCTGTCAGTAAATTATATTTTTTATTAGGCTTAATAGTTTATTTTGTCCCCAGTTTTGGTGAGTTTGGTCAATTAGATCCATTCTTTTAAAAAAGTATCAATTGCATCCTTACTTGGTAAAATTTGCCACAATCAAGTCCATTCCGTTAGATACTCATATACGACGTTAACTTTTTATTCTCTCTCCACTGTTTCACTGCAATGCAGCAGACATTTCTGACACACTTGACACGTAAACTTTTTTATGAATCCAAATGAAACCTTCTCAATCTTCTTCCTCTGACTCTTGCCTCTCCTTCGATGACTACCTCACTGAGCTCCTCCACCCTGAAATTCA


Gene Sequence:
>Vu_12041(-)
ATGACCCTTTTCCGAGTTCGACTCCAAACCCCAAATAATTGACCTTGACACCCCTAACCCCTCACATTGCTTCACAAGAAACCTCAATTAAATAAGAAACCTTCTCTACAAATCTCTCTCCCAAGAAGACCGAGTGGATCCAATTTGGGTAACAGGATCCCAACCCGCCTGTGGTATTGTCGGAGAACCAACTGGAGAAGAAGCACTACAAAGGAGTCCGCCAATGGCCTTGGGGAAAGTTCGCCACCGAGATTTGTGACCCGAACAAGAGCGCGTCGAGAGTGTGGCTTGGAACCTTTGACACCACCAAGGCCTACGACCGTGTTGTCTTTAGGCTTTGCGGCTCAAAGGCTATCTTCAACTTCTCGCTTGAAGCAGGCGTAGCGGAGGAGGCCGCCGACGCCGAAGGCGAAAGGAAGCAGCATCGGGAGGAGGAGGAGGTAGAAGAAGTCAAGCCGGTTGTGAAGAAGGAGAAAACAACGGACCAGGAGGTGAACTGTTTTCGGAAGTGCCAAAGGTGGCGAATTTTCTTTCGTATGTGAAGGAGTTGGCAAGCCTGTTCTCTGGCGCTAACAGACAACGCGAACACCGGCGTGGTTAAGCTTGGCAACGGGAGGGTGGTGTGTCTAACGGAGATGCAGAAGGGGGAAATTTTGATTGACCCTAATATGCTGGAAACGGTGGGGAAGTTCGTGTGCAATGACTCGTTGGGGTCTGATTCACTGCGCACCCTATGTGAGGGATAAGGAGTTTGTGAAGTTGTTTCCAGATTTGGTGAGAACAGGGTACCTTAGGGTGAGGATGGAGCCCGATACCAATTGATATTTGGATATCTTAGCCTTAGATTGTGGAAAGATCATAATGCATAAGAGTGACTTATGGTTTACTTAACATTGATTAATTAATAGGGTTGGACGGTTCAGAATACCGCTGGATGGAAGTCTGGAGAACTAGACGCAACATTGGACCTAAATGAACATGGGAAAGGCATGGACTTGTGCAACATAAACCTTAATCATCTAGGAAAGAAATAA