Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12021 LG3 9170209 9172462 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to sulfate starvation, cellular response to sulfate starvation, ethylene-activated signaling pathway, defense response to bacterium, ethylene-activated signaling pathway, cellular response to sulfate starvation, ethylene-activated signaling pathway, response to ethylene, cellular response to sulfate starvation, response to ethylene, cellular response to sulfate starvation, defense response to bacterium, ethylene-activated signaling pathway, ethylene-activated signaling pathway, ethylene-activated signaling pathway, cellular response to sulfate starvation, defense response to bacterium, ethylene-activated signaling pathway, ethylene-activated signaling pathway, cellular response to sulfate starvation, cellular response to sulfate starvation
Cellular Component   located in   intracellular anatomical structure, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
T/A 9170225 missense_variant p.Ile700Phe
C/A 9170232 missense_variant p.Gln697His
G/A 9170237 stop_gained p.Gln696*
G/A 9170247 synonymous_variant p.Leu692Leu
A/G 9170248 missense_variant p.Leu692Pro
G/A 9170272 missense_variant p.Pro684Leu
C/T 9170288 missense_variant p.Gly679Arg
C/G 9170300 missense_variant p.Ala675Pro
T/A 9170364 synonymous_variant p.Thr653Thr
G/A,T 9170365 missense_variant p.Thr653Ile
T/C 9170389 missense_variant p.Lys645Arg
G/A 9170391 synonymous_variant p.Cys644Cys
A/G,T 9170417 stop_lost p.Ter636Glnext*?
G/T 9170437 missense_variant p.Thr629Lys
T/A 9170946 missense_variant p.Glu459Asp
T/A 9170950 missense_variant p.Gln458Leu
A/G 9171011 stop_lost p.Ter438Glnext*?
G/T 9171483 missense_variant p.Ser280Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12021.1
MDCMDDDSMSGANYGILDDPSRRNADEETMRVEEEEEEEEDEEEDEEEEEVVTVEELETRMWRDGMMLRKLKEEKRDKEKGETVEMMKKKALIRAQDTVLKNMVKMMEICGVRGFVYGIIPEKGKPVSGASDNLRGWWKDRVKFDHNGPAAMLRYEEETGFEDMVSDGFNGQPLTAYSLNDLPDTTLGSLLSCLMQNCDPPRRRYPLDKGIAPPWWPTGQEWWWAQMGFTIDPGPPPYKKPHDLKKVWKMCVLTAVIKHISPDIAKIRNIVRHSRTLQDKLNARESAIWSAIVKREEYFARRSYPNFFQTLPPRAGPSVPYDNNVTNFIRGQQSNSLGGTLNLLGGLNNTPQHHNVANGRAWSFLDGHNNPSTSTSAATILLGNPPPTTDLITDDGATSFHGVQIDTAPATNGGARNFFVGQFDPPTPTSNLVHSGFIRAFLDGQYNPPPTSTTITTARSSVGIGNGNNITTMNNIVMSLDHAANKRKPGDDVQGITFPHEAYSCNSSECPYHETGFGFSDRNARNDHQLTCQYRSKNPLQVVGVGGLMPSQLGCGNSIVNMPLVQSRNFTSSVTNQNQTFTVGDMGMHNMNVPCLAGQNQHLQTVQTQVYNDSFFDGRICLDKDVFGNNMYVCSLESKNQQQVQNVGGTSGHSLNAEVSNVVHGNLSTSITVDCPFAWDSNNSQAEFLDSPLLTTADQDLLWP*


CDS Sequence:
>Vu_12021.1
ATGGATTGTATGGATGATGACAGCATGAGTGGTGCTAACTATGGTATTCTTGATGACCCTTCAAGGAGAAATGCTGACGAAGAAACGATGAGGGTGGAAGAAGAAGAAGAGGAAGAAGAAGATGAAGAAGAAGATGAAGAAGAAGAAGAAGTGGTGACAGTGGAGGAACTGGAGACAAGGATGTGGAGAGATGGCATGATGTTGAGGAAGCTGAAGGAAGAGAAGAGGGATAAGGAGAAAGGAGAAACGGTGGAGATGATGAAGAAGAAGGCACTGATTCGTGCACAAGACACAGTGCTGAAGAACATGGTGAAGATGATGGAGATTTGTGGTGTTCGTGGCTTCGTTTATGGCATCATTCCTGAGAAGGGAAAACCAGTCAGTGGAGCTTCTGATAACCTCAGAGGTTGGTGGAAGGATAGGGTCAAGTTTGATCACAATGGTCCTGCTGCTATGCTCAGGTACGAGGAAGAAACAGGGTTTGAAGACATGGTTAGTGATGGATTCAATGGACAGCCATTAACAGCATACAGTTTAAATGATCTCCCAGACACAACTCTAGGCTCACTCTTGTCATGTCTCATGCAGAACTGTGATCCTCCCCGGAGAAGGTACCCTTTGGACAAGGGCATTGCCCCTCCTTGGTGGCCCACTGGGCAGGAATGGTGGTGGGCCCAGATGGGCTTTACCATAGATCCAGGCCCACCACCCTACAAGAAGCCCCATGACCTGAAGAAGGTGTGGAAGATGTGTGTGCTCACTGCAGTCATCAAGCACATATCCCCAGACATAGCAAAGATCAGAAACATTGTTCGTCATTCTAGGACCCTTCAGGACAAGCTCAATGCAAGAGAATCTGCCATTTGGAGTGCTATTGTGAAGCGTGAAGAGTACTTTGCTAGGAGATCATACCCTAATTTCTTCCAAACCCTCCCTCCAAGAGCAGGACCTAGTGTCCCTTATGATAATAATGTTACAAATTTTATTAGGGGGCAACAAAGTAATAGCCTTGGTGGTACATTGAATCTTCTTGGGGGGCTGAATAACACACCACAACACCACAATGTTGCTAACGGTCGTGCTTGGAGCTTTCTCGATGGCCACAATAACCCTTCAACTTCCACCAGTGCTGCTACAATTCTTCTTGGGAACCCTCCACCAACCACCGATTTGATCACTGATGATGGTGCTACCAGTTTTCATGGAGTGCAGATTGATACAGCACCAGCCACAAATGGTGGAGCTAGAAATTTCTTTGTGGGGCAGTTCGATCCACCAACACCAACCAGCAATTTGGTTCATAGTGGATTCATAAGAGCTTTTCTGGATGGCCAATATAACCCACCACCAACATCCACAACTATAACAACAGCAAGAAGCAGTGTTGGTATTGGTAATGGCAATAACATTACAACGATGAACAACATTGTTATGTCACTAGACCATGCTGCTAATAAGAGAAAGCCTGGGGATGATGTTCAAGGTATTACATTTCCTCATGAGGCCTATTCTTGCAACAGCTCAGAGTGCCCTTATCATGAGACTGGCTTTGGATTCAGTGACAGAAACGCGAGGAACGATCATCAGCTGACATGCCAATACAGAAGCAAAAATCCTTTGCAAGTGGTTGGAGTTGGAGGGTTAATGCCTTCTCAGCTTGGATGTGGGAATTCTATTGTAAATATGCCTCTTGTTCAATCCAGGAACTTTACCTCATCAGTCACTAATCAAAATCAGACTTTTACTGTTGGGGACATGGGGATGCACAACATGAATGTTCCATGTCTTGCAGGCCAAAACCAGCATTTGCAAACTGTTCAGACTCAGGTGTACAATGATAGTTTCTTTGATGGAAGGATTTGTTTGGACAAGGATGTCTTTGGCAACAACATGTATGTGTGTTCTCTAGAAAGCAAAAACCAGCAGCAGGTGCAAAATGTTGGTGGTACCAGTGGCCACAGTTTGAATGCTGAAGTGTCCAATGTTGTCCATGGCAATTTGTCAACATCGATAACAGTGGATTGCCCCTTTGCATGGGATTCAAACAATTCCCAAGCTGAATTTTTGGACTCTCCTCTGTTGACAACAGCAGACCAGGATCTCCTTTGGCCATAG


Promoter Sequence:
>Vu_12021::LG3:9172462-9174462(-)
TTTTTCTTTTTTTACCAAAATAGTACAATAATTAATCTTTTTTTTTCCACTTGGTTATATATCATTTTACTGAAAGGTCAACACGGTTGCACCTTTTTACAATTGAAAAATTATTTTTATAAAATTGTTGTCTGTATTTAGTATAAAAATTAAGCACTTTTTTCTTGTGAAAAATACATGTTTTGTGGTTTAGCAAACATATATAATTTGTTTTGTGGAAGCCTTTCATCATCCAAACCCAAGTTTTCATCAAATTTTTATGATAATAAAAATTGTAACACAATTTATTTTGGTTTTAAGCTTAACTTTCCATATATATTGTTTTGTAATGTCTATATAAGATTAAGTGTTCTTGTGACAATTTTATCTATTTGAAAAAGATCTTTTTGTTTTCTGTGTCCTAATTATCTCACTTTCCTTTGTGACACTCTCTTGATTCCATTTTCAATTCAACCTCTACCCTTTATCCTCCTTTTTGCCCTACAAGGACTTTTGGTATGATTCAATTTATATATATGTTTTACATTACTTTGCTTAATTTATTGCATAATTGTTTATATTTAGTGTTTTATTCCATGCTTGATTAATTTCAAATAGAATAGGAGGAAGAATCACTAAATTATTTTCCTATTGCCAAATATTTCATAATTTTTCTGCATCTAGTTTATGCTTTCATTTATTTATTTTTTATTTGAGTTACCACAATTTTGAGAGTGATTATATATATTTTCCTCCAATTTTCCTTTCTTTTGAATCAAAAAAGATGTGTTTTTCCAAAATCTCCATATCCAATTTTGCAAGCTTTGCATTAAATAAATTAAATATGTTTTTTCTCCAAAACCATTTTCAAAAGGTGTTTTTATCTTTTTTAGCTAAACTGTATACTGTACACTTGAAGTAATGTCAACATTTTCTTCAATAAATAACACATGGATTACTTTCATAAAGTAGAAACAAAATATGTATATATAGCTTAATTTAAAGATAAAGCATACTTTTTAAAAATAGTTTAAAGGAAAAAGATATATTTAACATGAACAAAAATATACAAACACTTTTTAAAACATAAATATCCATCAAGTACTCATAAAAAAATGGTTTACCATCTTATCTATATAGATTTTTTTTTTCAAAATATGATCGTTTTATTTATTTTTTATTTTCTTTCTATTCAGGCTAAATTTTATCACTCCCTTCATTTTAAAAAATATAAACAAGTCACTATATGTTTATGTTTAAAGAAATAAAAACGAATTTATGAGTCTAATTTTGTACAAATACATTGTTTACACAATCTATATTCTATAACTATATAACAAACTTTTAATAACATCTTTGTATATACTAAATTTTACCAATTTTTTCAAAAATTACTTAAATAATCAGATTTATTACCATTTTAATCAGATAAACAAACTATTTTTCAGTGACAGCGTATCAAACTTTTAGCATAATTTTCTTCTTCTAATTTATCATTAAGTGAATTTTACATATATAATATCACTTCCAATTTTTTTTAATTCAGTTTCATAATTCAAAAATCAAATAATTAAATCACACAACTATACATATAGTTTTCACTATTACTCTTTTTTTTTTTTTTAACTTTCTTCTTTACATATTTTCTTCAAAATTTTAAAGATCAATACTACTAACCAAACCCTATACCTTAACTTTTTATCCAAACCCTAACCTAGTACAATCGACAAACACAACATGTTCTACGTCATCAAAGCAGGCATTATTACATCACAGTAGCTTACAGGTATACAAGTTTTATATTTTACCGTGATAAAATGGACTAAGAAAATCACGTTTCCCAAGAGCTTATCCACCTCTTTTTTCTTTGAACGATGATTTTATGGGGTTAAAAAATTATATATAGATTTTTCAATCTGTCTTCAAAAGGAGCTTTCTGAATGAATGGAATGATGATACATTGAATAAGCTTTTTCTTCTGTACACATTGTTTTTTCAGAGAACAAGAAAAGCCACAGGCA


Gene Sequence:
>Vu_12021(-)
ATGGATTGTATGGATGATGACAGCATGAGTGGTGCTAACTATGGTATTCTTGATGACCCTTCAAGGAGAAATGCTGACGAAGAAACGATGAGGGTGGAAGAAGAAGAAGAGGAAGAAGAAGATGAAGAAGAAGATGAAGAAGAAGAAGAAGTGGTGACAGTGGAGGAACTGGAGACAAGGATGTGGAGAGATGGCATGATGTTGAGGAAGCTGAAGGAAGAGAAGAGGGATAAGGAGAAAGGAGAAACGGTGGAGATGATGAAGAAGAAGGCACTGATTCGTGCACAAGACACAGTGCTGAAGAACATGGTGAAGATGATGGAGATTTGTGGTGTTCGTGGCTTCGTTTATGGCATCATTCCTGAGAAGGGAAAACCAGTCAGTGGAGCTTCTGATAACCTCAGAGGTTGGTGGAAGGATAGGGTCAAGTTTGATCACAATGGTCCTGCTGCTATGCTCAGGTCAAACTTTTCTTATCATCAAACTTATATATATTATTATTTACTTCAAAAAATATTCATATAAATTCAAAGATTGATGAACACTTAATACATATTTAAAGAAAAAAAATAATAAGTTTATAGAATACATGTGGTGCAGGTACGAGGAAGAAACAGGGTTTGAAGACATGGTTAGTGATGGATTCAATGGACAGCCATTAACAGCATACAGTTTAAATGATCTCCCAGACACAACTCTAGGCTCACTCTTGTCATGTCTCATGCAGAACTGTGATCCTCCCCGGAGAAGGTACCCTTTGGACAAGGGCATTGCCCCTCCTTGGTGGCCCACTGGGCAGGAATGGTGGTGGGCCCAGATGGGCTTTACCATAGATCCAGGCCCACCACCCTACAAGAAGCCCCATGACCTGAAGAAGGTGTGGAAGATGTGTGTGCTCACTGCAGTCATCAAGCACATATCCCCAGACATAGCAAAGATCAGAAACATTGTTCGTCATTCTAGGACCCTTCAGGACAAGCTCAATGCAAGAGAATCTGCCATTTGGAGTGCTATTGTGAAGCGTGAAGAGTACTTTGCTAGGAGATCATACCCTAATTTCTTCCAAACCCTCCCTCCAAGAGCAGGACCTAGTGTCCCTTATGATAATAATGTTACAAATTTTATTAGGGGGCAACAAAGTAATAGCCTTGGTGGTACATTGAATCTTCTTGGGGGGCTGAATAACACACCACAACACCACAATGTTGCTAACGGTCGTGCTTGGAGCTTTCTCGATGGCCACAATAACCCTTCAACTTCCACCAGTGCTGCTACAATTCTTCTTGGGAACCCTCCACCAACCACCGATTTGATCACTGATGATGGTGCTACCAGTTTTCATGGAGTGCAGATTGATACAGCACCAGCCACAAATGGTGGAGCTAGAAATTTCTTTGTGGGGCAGTTCGATCCACCAACACCAACCAGCAATTTGGTTCATAGTGGATTCATAAGAGCTTTTCTGGATGGCCAATATAACCCACCACCAACATCCACAACTATAACAACAGCAAGAAGCAGTGTTGGTATTGGTAATGGCAATAACATTACAACGATGAACAACATTGTTATGTCACTAGACCATGCTGCTAATAAGAGAAAGCCTGGGGATGATGTTCAAGGTATTACATTTCCTCATGAGGCCTATTCTTGCAACAGCTCAGAGTGCCCTTATCATGAGACTGGCTTTGGATTCAGTGACAGAAACGCGAGGAACGATCATCAGCTGACATGCCAATACAGAAGCAAAAATCCTTTGCAAGTGGTTGGAGTTGGAGGGTTAATGCCTTCTCAGCTTGGATGTGGGAATTCTATTGTAAATATGCCTCTTGTTCAATCCAGGAACTTTACCTCATCAGTCACTAATCAAAATCAGACTTTTACTGTTGGGGACATGGGGATGCACAACATGAATGTTCCATGTCTTGCAGGCCAAAACCAGCATTTGCAAACTGTTCAGACTCAGGTGTACAATGATAGTTTCTTTGATGGAAGGATTTGTTTGGACAAGGATGTCTTTGGCAACAACATGTATGTGTGTTCTCTAGAAAGCAAAAACCAGCAGCAGGTGCAAAATGTTGGTGGTACCAGTGGCCACAGTTTGAATGCTGAAGTGTCCAATGTTGTCCATGGCAATTTGTCAACATCGATAACAGTGGATTGCCCCTTTGCATGGGATTCAAACAATTCCCAAGCTGAATTTTTGGACTCTCCTCTGTTGACAACAGCAGACCAGGATCTCCTTTGGCCATAG