Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11903	LG3	7381882	7385890	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	biological_process
Cellular Component	is active in	cellular_component
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
T/A	7382011	5_prime_UTR_variant
A/G	7382209	5_prime_UTR_variant
T/A	7382217	5_prime_UTR_variant
A/T	7382404	5_prime_UTR_variant
T/C	7382432	5_prime_UTR_variant
C/T	7382543	5_prime_UTR_variant
A/T	7382545	5_prime_UTR_premature_start_codon_gain_variant
A/G,*	7382549	5_prime_UTR_variant
T/A	7382560	5_prime_UTR_variant
A/T	7382645	5_prime_UTR_premature_start_codon_gain_variant
A/T	7382884	missense_variant	p.Glu30Val
A/T	7382984	upstream_gene_variant
T/C	7382995	upstream_gene_variant
C/A	7383057	upstream_gene_variant
G/A	7383061	upstream_gene_variant
T/A	7383374	upstream_gene_variant
A/T	7383381	upstream_gene_variant
A/T	7383382	upstream_gene_variant
C/T	7383383	upstream_gene_variant
T/C	7383442	upstream_gene_variant
C/T	7383591	upstream_gene_variant
T/A	7383621	upstream_gene_variant
T/C	7383658	upstream_gene_variant
G/T	7383694	upstream_gene_variant
G/A	7383735	upstream_gene_variant
A/G	7383759	upstream_gene_variant
C/G	7383768	upstream_gene_variant
G/T	7383772	upstream_gene_variant
A/C	7383781	upstream_gene_variant
A/T	7383793	upstream_gene_variant
T/G	7383864	upstream_gene_variant
G/A	7383904	upstream_gene_variant
A/G	7383917	upstream_gene_variant
T/A	7383966	upstream_gene_variant
T/C	7384130	upstream_gene_variant
C/T	7384175	upstream_gene_variant
A/G	7384176	upstream_gene_variant
A/C	7384184	upstream_gene_variant
T/C	7384281	synonymous_variant	p.Asn37Asn
G/C	7384286	missense_variant	p.Gly39Ala
A/G	7384320	synonymous_variant	p.Glu50Glu
T/C	7384410	synonymous_variant	p.Asp80Asp
T/C	7384461	synonymous_variant	p.Arg97Arg
C/T	7384518	synonymous_variant	p.Tyr116Tyr
C/T	7384752	upstream_gene_variant
C/A	7384799	upstream_gene_variant
G/A	7384895	splice_region_variant&intron_variant
C/T	7384912	synonymous_variant	p.Asp180Asp
A/T	7384953	missense_variant	p.Lys194Ile
G/A	7385116	splice_region_variant&intron_variant
T/C	7385167	upstream_gene_variant
C/T	7385241	upstream_gene_variant
T/C	7385258	upstream_gene_variant
A/G	7385275	upstream_gene_variant
G/T	7385315	upstream_gene_variant
C/T	7385337	upstream_gene_variant
C/A	7385439	upstream_gene_variant
C/A	7385479	upstream_gene_variant
T/A	7385486	upstream_gene_variant
T/C	7385652	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11903.3

MESQLVDRNDAMEVSGNMDLITYEVQVDQETYEVDPNEGCRVLETSSGGELGICDDDHAIQEPYEGMEFESEDAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYEKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRHKKRLCATYQEQLTSFMKVVEEHNEKLSTKIHLVVNNLKEFESIDEILHQT*

>Vu_11903.2

>Vu_11903.1

CDS Sequence:
>Vu_11903.3

ATGGAATCTCAATTAGTAGACAGAAATGATGCTATGGAAGTTTCTGGGAATATGGATTTGATTACATATGAAGTTCAGGTAGATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGACTTCTTCTGGGGGAGAATTGGGTATCTGTGATGATGATCATGCTATTCAGGAACCATATGAAGGCATGGAGTTTGAATCTGAAGATGCTGCTAAGATATTCTACGATGAATATGCACGACGTGTAGGATTTGTCATGCGTGTGATGTCATGCAGACGTTCAGAAAGGGATGGAAGGATTCTTGCCCGCAGGCTTGGGTGCAACAAAGAGGGTTACTGTGTCAGCATCCGAGGGAAATTTTCATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGGTGTAAGGCAATGATTCACATCAAATATGAGAAATCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCTCGTGAAGCACGCCAAACAATGGATGAGAAGGACAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAAAAACGGTTGTGTGCGACATATCAAGAACAACTTACTTCCTTTATGAAGGTTGTTGAAGAGCACAATGAAAAACTATCTACGAAAATTCATCTTGTAGTTAATAATCTCAAAGAATTTGAATCCATAGACGAGATTTTGCACCAAACATAG

>Vu_11903.2

>Vu_11903.1

Promoter Sequence:
>Vu_11903::LG3:7379882-7381882(+)

CTCTATATAAAAGTAACAATAGTTTTGTATGGAAAGCTTTTATTTAATTCTTATAGTAATAGTTAATGTTTTCTATAATAATATCATGTTTTCTATAATAAAGTTAAAATAAAAATATACCTCTTAAAATAGAAAAAAATGATTTGATATAACAAATTGTGAAAACATTAAATTGCATTTTTTTCTTTTATATCGTTAAACTAAAAGTATCACATAACCATTCAAATTGTTTAAATACTAAAAATATTGCAATATTTAAATTATTTATCTCAATATTCAATTGTCAATTATAATTATAATAACATTTAATAATATACTTATAATTTATAATTCTCCATACTTAAGATCTAGTGTTTGAAATTTGCTATATTGATTTTCTAAGATTTGTTTTTCAAACCAACGTTATTTTTATAATATGATATTTTGTGCCAAGATAATTTACAACATAGAAAGTCACGATGTTATCACATCATCAATTAATGGTGATATTTGATGAAGGAAAAGACTAAAACTAATGACAAAAAATTTAAAGATTAAGAGAAAGTTAAGAGAATAAAATATATCAACGGTGTATATATATATGTTTAACAAATTAATGCCTAAACAATAGTAATGTGATTTAATAATGGTTTAATATCCTATTTTGTCCCAAGGCTCGAAAATGTCAAATTAGTCAATCCTTTAAAAAGTGCGTCAATTATGTCTTTACTTAAACATCAATGAAATCTCTTCCGTTAAATCTGTACAAACGACGTTAACTATTTTTCTCTCACTTCTATTTTTTTTATTTTTCTGTGTAATGCAGGTTTTTGTCAGTTTTTTTTTTCTACTTTTCTTTTACTTTAAATACTTTCTTCTACTTTTCTTTGCATACTCTTGTAATTATTTTGTATAAAAAATTAATGTGACTGACTAAGTTTGACTAACAAATACTAAGATCTGAATTGCAAATAATCATTCGTGCACTGTTTTTTCTTCTTTTACGAATCCATGGGACCACACAAATATGTATTAAATGAAATAATATTTAGGAGACGTTTTGAGTTAAGTTAATTTAATGCTATTAAATGTTTTGAAAGAAAAAATAACTTTTTTAAATAAATATAAGTTGAAGTTAGAATTCATCATTTAATTTCATATTTAAAAAATTGGATTTACATTACTAGATGTATTTAATGAAGACTTAAATAATTAAAATTAATTTTATTTATAATCATTAGTATTACTTTTTTTATGACTTTATTATTAAGTAATATTTTACCAACTTATTTTATGTGTAATTAAAAGTTGTTTTTGTAAATATAATAAAAAACCACTCTAATAAAATAGTATAATTTTTTCTCTTACACATTTTTCTACTTCTAATACATTAAATACATGTCTAAATTAAATAAATAAAGTTATTATAAGGGTAACAGGAAAAAAAAGTAATAAATATATTAGAAAAGAGAAACAACAATTTAAAATCAAGAACAGGAATAATAAACAAAATATTCTTTTTTATCTGATTTAAATAACATTCATTATCTTTTTTATTATTAATTAAAATAATATATATTTACAAAAAGATAAAATTATTTAAATTTATGAACGATAAATATTAAATAAAAGTGAAAGTTACTGGAGAAATGAATTATTGGGAAGTGAAATTAGAAATAGTATGGAAAGTATAAATGGTCTAGAGTGGCACACTATTCCATGCATCTAGGAATTTGTATTAAGAAAAAGAAGGAGAGAAATATATTTATAAAATAATATGTTAGTATTGTTTTATGTGGAATTATCAGATCTTTAACGCCGTTCATTTATATTTAATAGACTAATTTAATTTAAAATTTTAAAAATAAGAATCGATTTTAAACATTTTTAAAATAAGAGACTGAATTGAGATTTATCATAACAAAATTGACTATTAAACCTTAATGATTTTTTATGTATTAAAATCATAATGCAAATGGAAGAAAATTTTAAATATTAAAATTTTAAAATGTTTTTATTCA

Gene Sequence:

>Vu_11903(+)

AGAAACAAAATAGTATTTTTAGGGCAGTCAAGTGCAGACAAACAAGCACCGCACTCCAACGACACCCCTGCGAGGACCACACTGGTTTATCATAATTTTATTCTAAGTTGAGTTTGTTTTCTTCATATTTCTATGCTGAACTTGCCCATTTTATTAATTTCTTTTATCGCTTTGGGTTTTGTTTTTAATTTGTTTCGGTTTCCACTTTTCAAGAATCGGTCTTGTGTTGATTAATTTTGTCTGTTCTTTGTATTGTTTAATCCATGGATTGAACAATTGGGTAAAGATCACAACTTTATGATGTTGGTGAGCTCATTGTGTTTTTGCACTCTGCATTTCTAATTCTGGGTTTTATGAAAGTGTTCAGGATTTGTGTGATGTATATATTTCAAGAACATTGACTAGCTTGACTCAACTTGTGATTTAAAACGGTTTACTGTTGATGGCAAAGAAGGGTTTTTGAAAAGATGCCCCCATTCTCTTTGTTTTCTTTTTAACCTTCTTCTTACTTTCTCTTCCGTGAGTTATATTGTTTTTTATCTTTTATTCTTGAAAACCCTATATGTCAATTATGCTGCACTACTTAGCAATCTCAATTTTTGATTTGAAGACTTTAAAAAGACCAGGTGACGAATTCTTAGACATGGGATTGGGAGCTATCCCAGTAATAGTGGTGATTGTAATGTATTTCTTCTGCTGAGGAAAGAAAATGTACCTCACTGATTTGAATTTGTGTGGGAATATCTTAATGAACTTTGTTTATATGACTTCAGCTTTGAGTATGACCATTGACCATGATCACTTTCTGTTCGCTAGTTAAGAATTTATTGTTTTGTTGAAGACAAAAGCACAAGCTTTGTGTTTATATCAAAGTGTTGAATCTTGACAGGGTTTATAGTGTGTTGTTATGCAACATGGAATCTCAATTAGTAGACAGAAATGATGCTATGGAAGTTTCTGGGAATATGGATTTGATTACATATGAAGTTCAGGTAGATCAAGAAACATATGAAGGTATGCTATTATGATCACATGATTTTGATATGGAATTCTGAACGAAGAAAAGTGATGGAGGTCTTAAATATAGATCCTTGCATCCTGAATATCACTTTATCATGGTTTCTGCATCATCTAACAATTGGTTTAGGAGGTTTCCAACTTTTAATGTAGTAAACCTGAGTTGTTGCACCCTTCCCTCTTGGTCTGGGCAGAAGTCACCGGTTTAATAAAAGAGTGCATCTGGTGTCCATTCCTTAATAACTCCAATAAGTATTTGATTGTGGTATTTTCAAACATATTTTCCACTTTTTAAATATTGTTACTTAACATAAAAGAAGTCTAAAATGTATAAACTATGCGGTATGGAATTCAAGAGGGAGAAAGAAAAAGAAAGACAGAGAAAGAAGAGGGGGAGAGAGAGCAAAACGGAATGGGGAAGTTTCAGGGAAAGTGGAGAGAACAGAAAGATCAAGAAATATGTGCACGGCACTTCTGTCATTAACATTCAATCTAGATTCAGCTATCTAAAATACAATAACCTACCTTATTTATAGGCAGTTGTCAAACAGCTATGAACTAATAACAGCTGACTAGTTAACTAAATAACATCCTTGTCTTAGTTATATTGGCATGCCACTATGATATGTGGAAAATAAATTAGTTTGTATCAGCAATTACCTACCCTTTAAACCCCACTTTACAATATAGTGCTGGAGTTACTCTTCTAATTTATAGTTTGTTTCATGTTACTTAGTTAATTAATCTCTGTTGATTGTTTGGGTGTGTAAAAATTATATATTTACAGTAGGTATGGATTTTATTTAGTTAATTATTCAATGTCATAGCTTAATCCTGCAGCATGCAACCCCTCCCAAATGACTTAAATTCTGTGCATTAGTTAAGTGATTCATTAATGATACATTTTCTATGCCTTTTTGCCATATCCTCATTCAAGGATCAAACCCTGAGAAATCAGTTGTATGTTACTCTGTCTGAAAGAAACATATCACTGAGATATACATTGCAAGGGATTCACATGTTTTGCGGTGATTGCTTGGATGGCATCCTTCCACTGGACTCCTTTATTTTTTTTGTTCACTTTTTATTGGGAGTTGAGCAATGAAAAAAGTAAGATAAAATTTTTGCCTATGCATTCATATGACTGTTAAGGGTTCTATATAGGGAGAATTGAGTCAAATCTCAGATGAAGTATAGGCCTTCTGATTATGTTTAGAATTCTTGATTTCTTTTCTGCAATTTAATGACTTAAATTTGAACTTCTTTCTTGACATTCCATTCTTAGATACAACAGAAGTGTTATCTTCTGCACTATTTATTCTCATTACGAGAAAATATTTTGATGGGTTTCAGATATTTATTTTTGTGACAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGACTTCTTCTGGGGGAGAATTGGGTATCTGTGATGATGATCATGCTATTCAGGAACCATATGAAGGCATGGAGTTTGAATCTGAAGATGCTGCTAAGATATTCTACGATGAATATGCACGACGTGTAGGATTTGTCATGCGTGTGATGTCATGCAGACGTTCAGAAAGGGATGGAAGGATTCTTGCCCGCAGGCTTGGGTGCAACAAAGAGGGTTACTGTGTCAGCATCCGAGGGAAATTTTCATCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGGTGTAAGGCAATGATTCACATCAAATATGAGAAATCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCTCGTGAAGCACGCCAAACAATGGTAGGTTCATATTTCTTATCTATTCGTGTACTATGTTGTTGATATATGCGTTACTAATTTGCTATTGCTCTGCTCATTCGTCTAATCTTATGCAGCGTCCCTTTCTTATTTCTCTATATTTTAAATAGCAACACTGTTTTCTGAATTCAAAATGATGTTTTCTAACATTGCTTTATCATCTTTTGTTGCTTTCTGGGTTTAGGATGAGAAGGACAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAAAAACGGTTGTGTGCGACATATCAAGAACAACTTACTTCCTTTATGAAGGTTGTTGAAGAGCACAATGAAAAACTATCTACGAAAATTCATCTTGTAGTTAATAATCTCAAAGAATTTGAATCCATAGACGAGATTTTGCACCAAACATAGCCGTGAATCAGGTGGGTGTTTAAGCTCTTGTTATTTAGCATTTACCTATTCAATCATAAATATATTTATACTCTTTGAGAAACATTTTCTCTCTCACCTAAGTATCCGATGAAGTTCTTGTTAAGGTTTTTTCCTTGGTCTAAAACTGTGTTCATTTATCCAAGCATTAGTTGATGATGTCTATAGTTTGAAGTAGATTTCTGTTTCAATATTGTCCTGTCTATTATCTAACTATCTGTATATGCATCTGTGCAAACTAGACCCTTTACTTTTACTTAAAATATACAAATTTGGTTATGCATTTTGAAGATTTACATCTTAAAAAGATAAAAAACTTCTGCACATTTAAATTGTAATCTGCATAATTCTGTTGCTTCCTTCTCCTTCTGCATCCAATGTTATGGTTAGACTTGTAGTCAATTTAAGTTGACATAAGCATTTCATATGTTGTGCATAATGCAGGTAGCGGTTGATCACTAAAAAGTTTTGTCATGTTGAAAGAATGATCCTTCAATCCATCATGAATTGCACACTCTGATTCAATGAATACTTTGGTAAGGCCAATCTTGCCACAGAGAAGTCCACCATATGTGTAAACTGTGAAATTTTATACCTTGTCACAGTGCCTTGTAATCTTTGTATACTTTTTGTACTCCCCTCATATTACACAAGAAAATGTAAACAATAATACTGTGAAATACTAAGTTTGAAACTATTGTAACACAATAGTATTCTTGATAGGACAAATGTGTTGGAATGCTTTATGTCAATCAATCCGTTTTCTTAGGA