Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11850 LG3 6645669 6646772 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   signal transduction
Cellular Component   located in   plasmodesma, cytosol, plasma membrane, apoplast, plant-type cell wall
SNP Position Effect Amino acid change
T/C 6645691 missense_variant p.Leu8Pro
A/C 6645698 synonymous_variant p.Ala10Ala
G/C 6645736 missense_variant p.Gly23Ala
A/G 6645746 synonymous_variant p.Pro26Pro
G/A 6645937 missense_variant p.Arg90His
G/A 6646119 missense_variant p.Val151Ile
A/C 6646185 missense_variant p.Thr173Pro
C/T 6646207 missense_variant p.Ser180Leu
G/A 6646303 missense_variant p.Arg212Gln
C/A 6646307 missense_variant p.Asn213Lys
C/T 6646448 synonymous_variant p.Ser260Ser
T/C 6646528 missense_variant p.Phe287Ser
C/A 6646529 missense_variant p.Phe287Leu
C/T 6646664 synonymous_variant p.His332His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11850.1
MARHSLLLLAAAILAAAVVAASGCSPSDREALLGFRQALNEPYLGLFNSWTGSKCCVNWYGVSCDAATGRVTDVNLRGESEDPIFEKAGRSGYMTGKLSPAICGIDTLTTLVVADWKDISGEIPACITSLSSLRILDLIGNKFSGEIPSDVGRLNRLTVLNLADNTIAGKIPTSITQLTSLKHLDLSNNLLTGEIPKNFGNLAMLSRALLNRNQLTGSIPVSISKIYRLADLDLSMNRLTGSVPFELGKMPVLSVLNLDSNSFKGLIPESLLSNGGMGILNLSRNGFEGSIPDVFGSHSYFMALDLSYNNLKGRVPTSLASAKYIGHLDLSHNHLCGSIPVGEPFDHLEASSFGFNDCLCGNPLKTC*


CDS Sequence:
>Vu_11850.1
ATGGCACGCCACTCGCTCCTCCTATTAGCAGCGGCCATTCTCGCCGCCGCAGTGGTCGCCGCCAGCGGTTGCTCGCCATCGGATAGGGAGGCGCTTCTTGGCTTCCGGCAGGCGCTGAACGAGCCCTACCTCGGCCTGTTCAACTCGTGGACGGGCTCCAAGTGCTGCGTCAACTGGTACGGCGTCAGCTGCGATGCCGCCACCGGCCGCGTCACCGACGTCAACCTCCGCGGCGAGTCGGAAGACCCAATCTTCGAGAAAGCCGGCCGCTCTGGCTACATGACCGGAAAACTCTCGCCGGCAATATGCGGCATCGACACCCTCACCACCCTCGTCGTCGCCGACTGGAAGGACATCTCCGGCGAAATCCCCGCCTGCATCACCTCCCTCTCCTCCCTCCGCATCCTCGACCTCATCGGAAACAAATTTTCCGGCGAGATCCCCTCCGATGTAGGCAGACTCAACCGCCTCACCGTCCTCAACCTCGCCGACAACACCATCGCCGGAAAAATTCCAACTTCAATCACCCAACTCACCTCACTCAAACACCTCGACCTTAGCAACAACCTTCTCACCGGCGAGATTCCCAAGAATTTCGGCAACCTTGCAATGCTGAGCCGAGCGCTGCTGAACCGAAACCAATTAACCGGTTCAATACCGGTTTCGATTTCCAAGATTTACCGGCTCGCGGACTTGGACCTGTCCATGAACCGCTTGACCGGTTCGGTTCCGTTTGAGCTCGGAAAAATGCCGGTTCTTTCCGTGCTTAATCTGGACAGCAACTCATTCAAGGGTTTAATACCCGAGAGTTTGTTGAGTAACGGGGGAATGGGTATTTTGAACCTCAGCAGAAATGGGTTCGAAGGATCCATACCCGATGTTTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTACAACAATTTAAAGGGTCGGGTACCCACATCGTTGGCATCCGCTAAGTACATCGGGCATTTGGATCTCAGTCACAACCATCTGTGCGGATCCATTCCTGTCGGGGAACCCTTCGATCACCTGGAAGCGTCATCGTTTGGGTTCAACGACTGCTTGTGCGGAAACCCATTGAAGACTTGCTAG


Promoter Sequence:
>Vu_11850::LG3:6643669-6645669(+)
AAACCCCCTAGTTGAGGTCTAAGGAGAATGACTGTTCATCCCTAATGTGTTGAGATAAAATCATTTAGAGAGATTAAACTGTCTAACAAATTCAGTTTTGAAGTTTAATAAAACATTAAATGAAACATCTTTTTCAGAAAGAAAAATGCCTACTTAACCTGAAATATCTAAGCGTTTGCTCAATCAAAATGAAAACTTAAGGTGTTATACGAGAAGCTATGCAAATTGTGCAAGTGCTAACACAAAGCTTTTTGAAATTAAGAGCATACAAAACAATGTTTTCCTGAATTCTATACCGTCTAACATGTTGTTTACAGGAAGCGTCTTATCAATAAGAAAAGTCTATATGAACATCTTGTGACAATATGCTTAAGGATTTCTATTCATGAGGTGTTGAAAAGAAAAACATTTTACAAAGGTACCGTCTAAGTTATATGTGCAAAACACTAAGAAGTGTTCTCAAGCTCTCTGATTAAAACAACTTTTCTTGAGAATCATAAAAACAATGAAATTTAATGTCTTACATCTAAAAATAGTGTTATAAGCAAAAACGTCTTATGAAGAATATCGTCTAATGAAAAGCATGCCAAATTCCACATCTAAACAATTTTTCATTCATAAGCGTTTAACGCTTTAGATCGTCTACCATCAATATGCTATACATCATATAACATTTCATAAAGTTATACTTGAACGTTGCATTAATTATTGACAAGACCTGTGAAAAACTATTTTGAACAAGTAATGTAAATTAACGTCTATAAATGTTCAAAACATTTAATGTATGTACTATAAAGTGCTATTTTGCTTGTACTTTTTGTCATTTTTATCTGTCCATAATAGGAATACACAAAGGATTGATCATAACATCTGCGTATATTGGACAATGACGTTAAGAGAAGTGATTCTCTTGAAGACTTTTGCTCTATCAAGCCGTACAAGCTTTTCTTCGATATAAACTCTGATAAAGCACTGTATCTTTGCAGTGTCTTTTTAATTAAAGGCTACCTACTCCATGAAATTAACTCATTGTCCAACAATCGTCTTACAAAATAATATATATAAAGAAGATCAATTGAAAAGAAGAAGTTGGTGGTAGAAACATAAAATAAAAGAGATGGAAAATAAAAGAAGAAAAGAGGGTAAAAAAAAAGAGAAAACATACTTAAGAAAAATCATCATTTATCAACTTTGCCTTATCTTAAAGCTTAATCGTTTGATACCCTTCAACCCAATCAATTTCTATGATCACCTTTTGATAGATGAGTTATGTACTAAGTAGTTTATGCATAATACTTTGTTATTAAATTAAGTTCATGTAACATAAATATAAACTAGACTTAAAGTATTTAAATATTTTAAGAAGTTATGTATTGTAGAGACTTTCTATGAATAAAATATGTTAAATGATGTTGTAGATGGATTAATCAAACCATAATCAATATGGTGAATTAACTTAATTTGGATATCAATTTTATGAAAAAAATGCATTTAGTTTTATTAAACCATCCCCGAAAAGATAATTTAAAACACAAACCTTAACCCACTTCTTATTTAATAAATATCTATTCTAGTTTTACCATCTTGAATAAATTTTATGTAAAAAAAGTGTTGAAACTTGAAAAAATTATTTACTAATATGAAATTATTGAAAGAAGTTTTGTCATCTTTTAACAAACTAAATTACTATTCTAAATTAATTCAATTGAACTTACCTTTCTCAAACATCAATTCTTTTTACTTACTTAAAATGAAAGTACAAAACCCCAATTATTGGACACAAAACAAACCAACCATGAAGGCAAGCCCCACCACGTCATCCTCCCAAGCACAATAGCATGTGCATCACAGTGGAACTTTTATACCAACACTCCCCAAATCCACACTTATCACCGATTACCACCGACTGTAATAACAACATTACACCAGGGGTAATTTCGTCACTCAACATCTATATATAACAAACCTTATTCAAACACACTCCACTAAAATACACTCAA


Gene Sequence:
>Vu_11850(+)
ATGGCACGCCACTCGCTCCTCCTATTAGCAGCGGCCATTCTCGCCGCCGCAGTGGTCGCCGCCAGCGGTTGCTCGCCATCGGATAGGGAGGCGCTTCTTGGCTTCCGGCAGGCGCTGAACGAGCCCTACCTCGGCCTGTTCAACTCGTGGACGGGCTCCAAGTGCTGCGTCAACTGGTACGGCGTCAGCTGCGATGCCGCCACCGGCCGCGTCACCGACGTCAACCTCCGCGGCGAGTCGGAAGACCCAATCTTCGAGAAAGCCGGCCGCTCTGGCTACATGACCGGAAAACTCTCGCCGGCAATATGCGGCATCGACACCCTCACCACCCTCGTCGTCGCCGACTGGAAGGACATCTCCGGCGAAATCCCCGCCTGCATCACCTCCCTCTCCTCCCTCCGCATCCTCGACCTCATCGGAAACAAATTTTCCGGCGAGATCCCCTCCGATGTAGGCAGACTCAACCGCCTCACCGTCCTCAACCTCGCCGACAACACCATCGCCGGAAAAATTCCAACTTCAATCACCCAACTCACCTCACTCAAACACCTCGACCTTAGCAACAACCTTCTCACCGGCGAGATTCCCAAGAATTTCGGCAACCTTGCAATGCTGAGCCGAGCGCTGCTGAACCGAAACCAATTAACCGGTTCAATACCGGTTTCGATTTCCAAGATTTACCGGCTCGCGGACTTGGACCTGTCCATGAACCGCTTGACCGGTTCGGTTCCGTTTGAGCTCGGAAAAATGCCGGTTCTTTCCGTGCTTAATCTGGACAGCAACTCATTCAAGGGTTTAATACCCGAGAGTTTGTTGAGTAACGGGGGAATGGGTATTTTGAACCTCAGCAGAAATGGGTTCGAAGGATCCATACCCGATGTTTTCGGGTCACACTCGTATTTCATGGCTTTGGATTTGTCTTACAACAATTTAAAGGGTCGGGTACCCACATCGTTGGCATCCGCTAAGTACATCGGGCATTTGGATCTCAGTCACAACCATCTGTGCGGATCCATTCCTGTCGGGGAACCCTTCGATCACCTGGAAGCGTCATCGTTTGGGTTCAACGACTGCTTGTGCGGAAACCCATTGAAGACTTGCTAG