Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11847 LG3 6594244 6596385 PREDICTED: transcription factor bHLH130-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, photoperiodism, flowering, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, photoperiodism, flowering, photoperiodism, flowering, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, photoperiodism, flowering, photoperiodism, flowering, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein dimerization activity, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
A/G 6594259 synonymous_variant p.Thr352Thr
C/A 6594315 missense_variant&splice_region_variant p.Val334Leu
G/A 6594334 intron_variant
T/G,* 6594384 intron_variant
G/A 6594486 intron_variant
G/A 6594562 intron_variant
G/T 6594729 intron_variant
A/T 6594863 intron_variant
A/G 6594875 intron_variant
G/A 6595253 stop_gained p.Gln202*
T/C 6595306 missense_variant p.Asn184Ser
C/T 6595398 intron_variant
G/T 6595444 intron_variant
G/T 6595447 intron_variant
T/C 6595451 intron_variant
T/A 6595540 intron_variant
G/C 6595559 intron_variant
G/A 6595822 intron_variant
C/G 6595827 intron_variant
G/A 6595981 synonymous_variant p.Tyr135Tyr
G/C 6596323 missense_variant p.Asn21Lys
T/A 6596324 missense_variant p.Asn21Ile
G/A 6596340 missense_variant p.Leu16Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11847.1
MSVMYSPVFKYSDVELQLRKNQEMDSSIGNPQQHCHQPNSGLLRYCSAPSSLLASLVDNNILDCVNEESFTSEIHQHYVPSTSSEMDTMLSKSLPSNDGWNNSEALQEFGSKPVKQEIGESVPQGPPPQQNEYSYGGSHLIYQSQQIQGLPNEMGARNCSNLFRQKSSPAGFFSIENDLAALREIDAFKANDVSNRQATTSTSGFSSSLAFSSRPSSCLKQMPQIAENENESLQENCDQSRILVNEDGNSKFYIPSFTTEIWESSSFNAPKTESDDEIMFSTSNALESQVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSNENHCTRTCA*


CDS Sequence:
>Vu_11847.1
ATGAGTGTTATGTATAGTCCTGTTTTCAAGTACTCAGATGTTGAGCTTCAGCTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAACACTGTCACCAACCCAATTCTGGACTACTGAGGTACTGTTCTGCTCCAAGCTCATTGCTCGCAAGCCTTGTTGACAACAACATTCTTGACTGTGTCAACGAGGAATCTTTCACGAGTGAGATTCATCAGCATTATGTTCCATCCACGAGTTCAGAAATGGACACCATGTTGTCGAAATCGCTGCCATCCAACGATGGATGGAACAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACCACAACAGAATGAATATTCTTACGGTGGCTCTCATTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGAAATGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGCTCCCCTGCTGGATTTTTTTCCATCGAAAATGATCTTGCAGCATTGAGAGAAATAGATGCCTTTAAAGCCAATGATGTTTCAAATAGACAGGCTACTACATCAACCAGTGGCTTTAGTAGTTCTCTTGCTTTCTCATCCAGGCCATCTTCATGCCTGAAACAGATGCCACAAATTGCTGAAAATGAAAATGAAAGCCTTCAAGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTAACTCAAAGTTCTACATACCTAGCTTCACCACTGAAATCTGGGAAAGTTCTTCATTCAATGCCCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACCTCAAATGCTTTGGAATCTCAGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTGGATTTAGCAGTTGAGTACATTAAGGACCTTCGGCAACAAGTTAAGGTACTCTCAGATTGTAAAGCAAAGTGCAAATGTACTAGTAATGAGAACCATTGCACTAGAACTTGTGCCTGA


Promoter Sequence:
>Vu_11847::LG3:6596385-6598385(-)
CTTTGACATTAGATGATAATCTTCCAACTTAACCAAACAAAATTACAAACAAATGGTAATAAAAACGAACACTTGGATGTGAAAACCGAAAAGACTTATTATTTTTCAAAACATTCATTATTTTCCAAAATTTTAAGTTTTAACAGTGGTCTTAGAAGCTACTGTTTTTCATTATCAAATTTGTCATTGTGTTTTTTTACACGAGTGTTACTCTAAAATTGTCATGAAAATGAATCGTGTAAAGCATATTTTTGCTAAATATAGATATTCTTTTAGGCAATTACCACAGTACTTTGTATGAAAGCATTTTAGGAAGAAGCAGTTCAAAGAGGCATTGAACCAAGCAAAAAAAGCTGAGAGACTTGTACTGAAATGGAGAGAACATAAATGGAGGAGCATTCGAATAACAATGCTATCAAATGAAACACGGATTATTACTTAAAAGAAGTAGACTATCCACCTTTAACTGGATTGGACAAAGCAGGGACATTCACAGTATATGAAAACGTGAATCAGATCTTTTAGCTCATGCATAGATTTTTTATTAAAGAAAATAACAATTTTGTAATTTATGTTGGACTTAATATTTTTTTATCATTGATAATAATAATTTTATATAACCCCTAATAGTGTCTCACATATATTTATATATTTTAAGCTGATAAAAAAAACACCATGCAATTTTCATATAATTGGTTTCTAAAATATATTGTATTTATTTGGTTATAAAGTTAGAAGTTATGATGCATGAAAGATACCATAAATGTATCGTGTTATTAATGAAATTTCTAATGTATAAAATGTAGATATTTAATATAAGAATAATTTTTATTTAATAATGCTAAGTAAACGAAATTTTAATTTGGATTCATATAATTATAATATAGTTTTATCATGTTCTAAACATTTTATGTATTTTTCAACTCACACATGTCACATAGTATCTTATATTATTAGATATTGATATGTATTGAATATGACTATATGTGATGAATATGGATATGGATATGGATAAAGTATCCAATGGGTGAATAATAGCATAAAAGTGATTTTAATAATCCTAGAAGAATTAGAGGTACTTCCAAGTTAAAGAATTTTTTTAAAGTATGTTTGGATTAATTGTGTTTGAGAAGAACACTTTTCTTCTTACTGAAACGATTAATTTTATTTTGAAATTTGCAGAATTAGTTTTGTAACTTCAGAGGAATGATGTCTAGGGTAGTTATTTATTAGTTGAGTTTCTTAAAGTTTTTTATTTGTCTAAAAAGACTTGAGTAGAAGTGACGGACACTGCATGCTTGTACTTAAATGTCTCTGGTTTGTTTAATTTTATGAAATTCGAAAGTCTAACGATAAAAAAAATATGTAATTATCCACTTTCACTATTCAATATGCAAAGCCAAAGTTAGATCCAAAGACAGATTTTGATTATTTCTATGTTGAAGGAGTTTAGTTTAGTGGTCAACGGCAAGAGAATGAAAAATCATGGTTACAATGGACCCCCTTGTGTCATCAAGGTATAATCGTTATATTGTGGAATCATGAGGGTGGTTACTTCAAGAAACTGCATAAATATGTCACAGGTGCAAGACAAAATAATAATCTTCGTTTTCTACCCTCACAGCTTTTTCCTTTCTTCTTCTCATCTCTGTTAGTGTCTCTACTTTTCAGTTCAGACTCAAGGAGCTCAAAGACCTCAAATTTCGATTTCAATCTGCAAAATCTCACGTATGCCCTTTATTGCTTTTCAAGATTTTCTGCTCTTTCTACTCCCAAAAACTACTTTGATTGCAGTAGGAACAGAATTCAAGCAAAATTCTCGGCTGAATAGTTGTCTCATCACATGTTTTTTTTTCTATTTCATTTTGAACTATTGGTAGTTAGAATTTCCCTTTGGAAGCATGATTTTTTTACATACCACCATGGCTTGAAAAGGTTTTTCGCTAGGAATGATTGATGATCATTTTCTTTATTCAGTGATTTTCAGGTGATTTGCAAAG


Gene Sequence:
>Vu_11847(-)
ATGAGTGTTATGTATAGTCCTGTTTTCAAGTACTCAGATGTTGAGCTTCAGCTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAACACTGTCACCAACCCAATTCTGGACTACTGAGGTACTGTTCTGCTCCAAGCTCATTGCTCGCAAGCCTTGTTGACAACAACATTCTTGACTGTGTCAACGAGGAATCTTTCACGAGTGAGATTCATCAGCATTATGTTCCATCCACGAGTTCAGAAATGGACACCATGTTGTCGAAATCGCTGCCATCCAACGATGGATGGAACAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACCACAACAGAATGAATATTCTTACGGTGGCTCTCATTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGAAATGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGCTCCCCTGCTGGATTTTTTTCCATCGAAAATGGTATGCATTTTCTCTTGTTTGCTACTGCTTCCTTTATAGTCTATGGTTTTCCTTTTTTCCTTTTTTCCTTTGGTTTACTAATTTTTCTCATGTATGTAAAAAACATAGTATGGCTAAAATTGAACCATTTTTACCATATCCAGTCCTTCTGAAAATCGACATCATACATTGTCGAAATGTTCAGAATTAACTAAACCTTGCAAAATACATACTGCTAAATCAGATCCCTCTTTCCTTATTGGGAGATAGTTCTTTATGTTATTCTTGCAGAGAATGGAAACCAGATTTAGATGACAGATAAAAAGGTAGGAATATGTGAGAAGTTAATCTTAATCATAGAATCAAATCAAACAGCCAAGAAGAGATTGAAGTAAATCATTGTGTACGGTTTTATTGTCAAAAATAACTTCTCTTACCTCATTAAATATGTTCCATGTATACAGATATATGCATAAGCAGTTGCATGATTGTAAACAAGACATTAGTTTTAATGTTATGGATTATGAATACTTTTCTATTTCGTGTAGATCTTGCAGCATTGAGAGAAATAGATGCCTTTAAAGCCAATGATGTTTCAAATAGACAGGCTACTACATCAACCAGTGGCTTTAGTAGTTCTCTTGCTTTCTCATCCAGGCCATCTTCATGCCTGAAACAGATGCCACAAATTGCTGAAAATGAAAATGAAAGCCTTCAAGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTAACTCAAAGTTCTACATACCTAGCTTCACCACTGAAATCTGGGAAAGTTCTTCATTCAATGCCCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACCTCAAATGCTTTGGAATCTCAGGTACATAACAAAGTTTTTGAATTTACTTTCAACCAACTTTTTTCCACTGTTCATCATCATCATCATCATCATCAGGAATCAGATTTTGGCTATCCAAATCTTGGTCTGACCCACCATTTGAGCCTACCTAGCTCTTCTACTAAGAGGTCATCCATAGAGAAGTTTCTTGAAGTTCAAGGTTCAATTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAAAAATTCTATAGCTTCTGGCAATTATAAATCTCTTCTCAGTTTGTCACTTTTCATACTAACAAGACCATGCAGCTTACCCTTTTCTTGTTTGTTATCCTCAAAGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGAAAAGGTAATTTAACTCTCACAAGAACATCACATATTCATATTCATTTTATTTCACTTTCTCTTTGAGAATTGATGTTAATTTGACACTTCTTTCACATGACAGCAAACAAGCACAGCAGATATGTTGGATTTAGCAGTTGAGTACATTAAGGACCTTCGGCAACAAGTTAAGGTACTATAGAATTACAAATATTTCCACAAATCTTTCTACAAACTCCACCAAACTCATTTTCTAACTAAACTCCATTCTCCTTATGCAGGTACTCTCAGATTGTAAAGCAAAGTGCAAATGTACTAGTAATGAGAACCATTGCACTAGAACTTGTGCCTGA