Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11799 LG3 5951728 5954008 PREDICTED: homeobox-leucine zipper protein HOX11-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/C 5951748 5_prime_UTR_variant
G/A 5951781 5_prime_UTR_variant
T/C 5951810 synonymous_variant p.Leu3Leu
G/C 5951944 missense_variant p.Arg48Pro
G/A 5951986 missense_variant p.Arg62Lys
A/G 5952021 missense_variant p.Thr74Ala
C/T 5952130 intron_variant
C/T 5952147 intron_variant
T/A 5952171 intron_variant
G/A 5952318 intron_variant
A/G 5952329 intron_variant
T/C 5952386 intron_variant
T/A 5952439 intron_variant
C/T 5952460 intron_variant
C/G 5952552 missense_variant p.Gln125Glu
A/T 5952583 missense_variant p.Glu135Val
A/G 5952757 missense_variant p.Asn193Ser
C/T 5952803 synonymous_variant p.Leu208Leu
T/C 5952952 intron_variant
A/G 5953083 synonymous_variant p.Gln229Gln
C/A 5953167 intron_variant
T/C 5953174 intron_variant
C/T 5953407 synonymous_variant p.Asn288Asn
C/T 5953449 synonymous_variant p.Cys302Cys
A/T 5953511 missense_variant p.Asn323Ile
C/T 5953954 3_prime_UTR_variant
C/T 5953997 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11799.1
MELGLSLGDSSRPLLGFMEKPREASNQLGLGFSTALSIGPVITTRKDRQDEQEEFEEEEETRQKSNNNINTDTTEDPSEPNNNNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPQAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTSSSQSAPNATINANSGAMTIVKSTATNNDSPSKAIGFPFSKPRFHPFVHTTQQPHQHQSPSS*


CDS Sequence:
>Vu_11799.1
ATGGAACTTGGTTTGAGCTTGGGAGACTCTTCAAGGCCTTTGCTCGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCGCGTTATCAATTGGGCCAGTCATCACTACACGAAAGGATCGGCAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAACAAGGCAGAAGAGCAACAACAACATCAACACTGATACAACAGAAGATCCTTCCGAACCCAACAACAACAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCCAGGGGCTTGGACGTGAACGCACAGCCGCCGCAGGCGGAGGATGAGGCAGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAGGATGATAACAACGGCAGCGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGCCAAGTAGAAGTATGGTTTCAAAACCGAAGAGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAAAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCAGAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAAGCACTGCCACCAACAATGACTCACCCTCCAAAGCCATTGGATTCCCATTTAGTAAACCCAGGTTTCATCCATTTGTCCACACTACCCAACAACCCCATCAACACCAATCTCCATCATCTTGA


Promoter Sequence:
>Vu_11799::LG3:5949728-5951728(+)
TGTCCCCCCTCTTCAATTCAACATAAAACAAATATTACTGATTAACTTATTATAAATATACTTTCATTTTTCATCATCAATTAACCTCAAAACATATCCCTCCAATGTTTAATTTAATAAACATACTAATTTCCATCCATAGTAACTACTCAATTTTTTTTAATTTAAAAATAGTTTATCTATTTAAAAATAGCAATTAGAAACAATAAATGTTTATGAAATGAGAACTAAACCAAACATTTTAAAAAAAAAAAAAGTTAGCTAACTTTATAAGGGTAAAAAACAACGTATTAATTTTAATACAATTCATCAAATTAAATACACTTAAATTTCATTTATTAATAATAGAAAGTATATAAGTTAAGCCCTAATAATATGGTGGGTTTTCAGTGCCCACCACCAACTTATGACGTTACAAATGTTCCCACAATTCATTGCGTGCGTGCCTTTAGAACGTCAAGGAACTTATCTCCTACAATCTTTACATTTATATTTTTTTTAAAGAAAAAAGAGAACATGTATAATTAAAGATGAGTGTGAAAAGATAAACATGTTTTTTTTTTAATTTTGTTGTTTTTCCATTTAACTTAGATGAGTTAAAAGTTTGATATTAAATAAAAATGAGTCAAATATGAACACTATAGAAATAAAGACTTTACTCTAATATATATTTTATAAATAGATTTATTCATTATTTAAAAAAAATTAACAGTAACTTTTCTTTAATTAATAAATTGAGATTTAAAATTTGAATTTATGTTATGCAGATCTAGTTTAGAAGTACAAAAAAACATTACAATATATATTCTAAATCGATATTAATTTAAATGTGTAAAAGTATATTCATCATTAAAGCAAAAAAATTGAGTTTGTGTTATCATACGAACAATCTCAAATCCATAAGAAAATACTTGTTCTAAGATATTTTTTTCTTTATAATGAAGAAAAGGTTATAATAGTAATAATAATTGACAGACCCTAGAGAAAAAAAAAGTAGTACTATTTGAGCAGCAGTCCTAATTGGCAGTGTGGGTGTGATGAATGGTGTAAACTGTAGGATTATTCCCATCCCTCATTGTTAGGAAGAGGTGTATGAAATGGTAATGATGTCCCCATCAAACAACAACGATCGTTATAATGTCATTTTCCCTCTCATTTTCCGGGAAAAAAATTTTTCTCCCAGAGCCACATGGGTTGATCCGTTTCCGAACATATCGTTACGCTGTTCACTTCACTTCACTCTTTGCAAAATATGCAGACACCGTGGGCTCTCCCAAGAGGAGCAGGTGGGTGGTGGGTGGCCAAGCCTTAATGGCAAGAATCCCTCTAAAGTCATGCCAAATGCATGATGATCATGATTGATGACTGAATAATATCATTGATGCACACTCATATGTACCCACACACACGACACAACACAACACCACACAACTTTTCAGACAACTAAAGATTAAACCAGTCCCAAATCCCAACCTCATCACAACATCATGCCATAGCCCCAACCAACTGTGTGAATGAATGAATGAATATGTGTGAACGAATGAATGCCACTACCCATGCTCAGACCTAACCTACATGATGCTCACGCGCCAAGCATAATTCTTTCGAGGAATAATGTTGTCGTGTGATTGATTCCATCAAAATCTACTAACTCACACCACCCATCATGCATCATCTAATGCCCTTCTATCTAGCTACCTCTCTAGGACTAGCATACCAGTATCTATATCTTAAAAATAGGGTTTCACGTGTGTTTGTCAACCTTGGTAACCTTTGTCGGTCAAACACCCTTTTCCTTGCACAAGTTTTTAAATTTTTTATTTTTAAATTCTCAAAAACTTCAACACTAAAGAAAAAGAGAGAAGACCCACTAAATATAAATACATTTTTTTATTTCTTTTTTGAAAGGTGACCATTTCGGTCATCCTATGATCACGTACTATTCTCTCTCTTATCTCTCTTTATTATAAAGACTCTCTCTTTCAAACTTCTCTTCCTTA


Gene Sequence:
>Vu_11799(+)
AATTCTCAGTCCAAACCACAGATCTTTCTCTCTCTTTATATCTCTCTTCATTTGGCCTATGCAGAGTAGAGATCATGGAACTTGGTTTGAGCTTGGGAGACTCTTCAAGGCCTTTGCTCGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCGCGTTATCAATTGGGCCAGTCATCACTACACGAAAGGATCGGCAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAACAAGGCAGAAGAGCAACAACAACATCAACACTGATACAACAGAAGATCCTTCCGAACCCAACAACAACAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGTAAAGACCCACTTTTTCACTTTTACCCACCAAGCAATTTTTCTGATTGTTTTTTGCAGTCTCTTACACGATCCTTTCCATTTAAACAACGTATCCAAGAGATTCAAATCCTTTCCATTCATTCCATGAAAAAAAAAAGAAAAAAAAAAGACTTAAATACAGTGTTATACATTTATCCGTACAGTTTCTTTTTTACAGTTTTTACTTCAGCAATGTGTGATAAGGATTTACGTTCTTCAGATTATCTGAATGAAACTCTAAAACATCAATTTGATTGGAAGATAAACTGCTCCACCATCGAATATAAGATTTTGTCCTTTTATTTGGTATTATTTGAGTCTCGTTGATGGCTTACGGGTCTCGTGTGGTCACGTGCAGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCCAGGGGCTTGGACGTGAACGCACAGCCGCCGCAGGCGGAGGATGAGGCAGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAGGATGATAACAACGGCAGCGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTGTGAGTTTCAGAAAGTGTTGAGATTCAATCATGGTTTTTGATCCATTTTTATGTGATAGGCGACTGACTTCTTTTTTTTTCTAATTTAAGAAACATGTCATATGAAAATTGGTCCGGATAATAAAACCATATGATAATTTGTACAAAGCCTTTGAATGATTTTTGATTTGGTGTTTAATACTAATAATAGTGTTGGACACGTAATCTTGCGATGCAGAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGCCAAGTAGAAGTATGGTTTCAAAACCGAAGAGCAAGGTACGACATCATAAGTACATGTTCTAGTCCCCTTCTGTTTGTGTTCTATGCAGATTTTAATACTTTTTCTTAAACTGTAAACAGAAGGGTATGTTAACCTTTGTTATTGGTTAGAAATATGATGTGTTTGTATGTGTGTTCATGCAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAAAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCAGAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAAGCACTGCCACCAACAATGACTCACCCTCCAAAGCCATTGGATTCCCATTTAGTAAACCCAGGTTTCATCCATTTGTCCACACTACCCAACAACCCCATCAACACCAATCTCCATCATCTTGAAAATATGCAGATCAAGACTAGTATTATTACTGAGTCCAGGCTTGGAAAGTTTTATTTCAATTTTGTATATAGGGAAGTTAATTTAGTTCTGAGAGCCTCATAGTTTTTACCTTTATTTTGTTTTCTTGGTGGGGTGGTGGTGGAAGGGGTCGCTCATACAGAATTTGGATAATTGGGTTTTGTTTTTTCTTGTTTGGATCTCCATGTATTATTCCTTCTTTCTCGGGTTTTATCCATAGTGAAATCAGAAAGAAGAGAGATGAAAATTTTAGACACCGAAGAAGAAGATAGATATCAATCAATCAAAGAGAAAAGGAAACGATACTATCCT