Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11715 LG3 4710374 4711861 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to wounding, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 4710502 intron_variant
G/A 4710526 intron_variant
T/A 4710538 intron_variant
A/T 4710577 intron_variant
T/C 4710578 intron_variant
G/T 4710667 missense_variant p.Asp63Tyr
A/G 4710668 missense_variant p.Asp63Gly
A/G 4710828 intron_variant
A/G 4710848 intron_variant
A/C 4710856 intron_variant
T/A 4710920 intron_variant
C/T 4710925 intron_variant
C/T 4710975 intron_variant
T/C 4711069 intron_variant
A/G 4711133 intron_variant
G/T 4711504 missense_variant p.Cys196Phe
G/A 4711615 missense_variant p.Gly233Glu
A/C 4711636 missense_variant p.Glu240Ala
G/T 4711655 missense_variant p.Arg246Ser
T/C 4711750 missense_variant p.Val278Ala
G/A 4711751 synonymous_variant p.Val278Val
G/A 4711760 synonymous_variant p.Ser281Ser
G/A 4711789 stop_gained p.Trp291*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11715.1
MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGHKSWRLQRCGKSCRLRWINYLRPDLKRGSFTTEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSASTISNMHKKSNPIFIMSSHTTNAPVETTFQTFSSLPKPPLNIVQTPSSIITSEYQTSPIISNNISSDLPYELLIDNGSNICSPSYMNPTAVELSNNENIADWVSRVNVDDFRGQTLEEGTQVQVQQEKDKICEDTVTDVREANKGNLERSASFESSNFDFGLLESVLSSEFISHDLSCMDELAWNF*


CDS Sequence:
>Vu_11715.1
ATGGGCCACCGCTGCTGCAGCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAAAAGCTTCTCAGATATATCAACACACATGGACATAAAAGTTGGAGATTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTCAAGAGGGGTTCCTTCACGACTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGATGGGCACAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTTCTATCTTCTCATAGAAGAAGCTCAGCATCTACCATCTCCAATATGCATAAAAAATCCAATCCCATATTCATTATGAGTTCACACACAACAAATGCACCAGTGGAAACTACTTTTCAAACCTTTTCTTCATTACCTAAGCCTCCACTAAACATTGTTCAAACTCCCTCCAGCATTATTACATCTGAATATCAAACATCACCTATTATTTCAAATAATATCTCGTCAGATTTGCCTTATGAACTGTTAATCGACAACGGCTCCAACATTTGTTCACCTTCGTATATGAACCCCACTGCAGTTGAATTGTCGAACAATGAAAACATTGCTGATTGGGTTTCAAGGGTTAATGTTGATGATTTCAGAGGTCAAACACTTGAAGAGGGAACACAAGTGCAGGTGCAGCAAGAGAAGGACAAGATCTGTGAGGATACTGTAACTGATGTGAGAGAAGCTAACAAGGGCAATCTTGAAAGAAGTGCTTCTTTCGAGAGTTCTAACTTTGACTTTGGCTTGTTGGAGAGTGTACTTTCCTCCGAATTTATCTCTCATGATCTTAGTTGTATGGATGAACTTGCATGGAACTTTTAG


Promoter Sequence:
>Vu_11715::LG3:4708374-4710374(+)
TCATATTCTTTCATCCTTTCTCTTTATCTTATTTTATTCAATTCATTGCTTGTCGGTTTCTTAAGTACCCATCTCACACTCTGACTATTCATCGACACCACAACTTAACTTAGCTGGCAAAGGAATAATAATCCATAACACCTTTTTCAAAATTCTACTTTAGACAATGAAAATTTAGACGGATATTATTACAAATTTAAATTAATTTATGAATATTTTGATTTATAAAACTTCTCTAATATAATATTTTAATCTATTTTTAATTTATTGAGAAACTTATGTTTTTTACTAAAATCCTTAAAATATGTCCAAACATAACCAGAAAGAAGGCAATATTTTTTTGTTAAGAACCCAACATTTTTTTTATCAATAATAAAAAATATATCAGTAAAATAAATTGGATGTTCTAACCCAAAATATTTAAACGGTAAATTTTTGTATAAACTTAATTATCTATTTTATGACTTTCATTTATTATTTATTAAAATTAACATGAATTTTATTCAATAATATAATTTCTTTTATAAATTTTATGTTGAAAAACATAATATTAATTAATATTTAATATTTCTATTTAACATGGGAAATTTTATTAAAAAATCGTACCAATCCTATTTATTTAATTTTTTTAAAGAATCATATAACTTAAGAGTTAAATAAATTTTAAAAAAAGTATGAAACACACCATTTTCACATCATTAATTTATTATTATTATTACTATTATAATTATAACTATTATTATTGACTTTATTTTTCATCCCATTTTCACCTATTTCTCTTCTTATCATTATATCATCTAACTAGTCTATACTTTTGTTCTCTTCCTTTATTTTACCTTGTGCCTTTTGCTTCTGTTCTTTTTAGCCTATACAACCCCAAACTGGGGTTTATATTCATCATTTTCCATTCATTAAGTTTCGTGGCATAAAATGTGTAACAATAAGTGCTTCTTTTAATAAAAAAGGAAGATAAGTTTTTTAAATTATATTAATCATCAATTCAAACTTCTTCATGCATAAGTTAATTTTGTAAAAAAATTATACATTTTTGTCAATTTTTTTATCTTTAATACATGTATAATTTAATTTTAGTTTATGGAAAATTTAATAATTAAATTTGTTTCTTCTTTTACTCTTAAAAAGATTTTATAAGAGAATCGTGTGAACATGTTAGAAATAGATTTATGAACATAAGTTTAGTGAAAGCCGTTGATGTTTTATTGCCTGGACTCTAAAAATAAATAGATTTGTGTACATATCTTGAAACAGATTTTGCTTTTAATTTACAATTGCTTCCTTTGTTTTGCTTTTATTTTTTATTTTCACTTTTAATATAGAATCTATCATTTTCTTTTTTAATTTGTTTCCCCTTTTAAAGATTGTTCATAGTACAGTGAAAATAATTATTTATATAAGAATAAGATGATTAAGAATTTTATTATATAGCTCATTTTTTTCCTTTTCTCCCAAAACACAATGCAATTAGTCCTTCTCACATTTTTTTTCCCATTCTTTCACGTTTCAAACTACGGAAAAGAAAAAATGTGAAAGTTTTCCTTTCTGATTGATGTGTTCCAAACATATCGTAAGAGTTTATAACACCAGTGAGACAAATACTTTTTTTCTCATTTTTTGCATGCATCCCATTTGTTTGATTAAATGCCTAACATAATTTGGAAAATGGGCAAAGTACGCTCATCACACCATCACAGTTGGTCCTCTTTTTCCAAAAAGTCGTAGTGCACATTTGTTGCCGTTTGGATAAATGATAGGAAAGATCGATTCTTGCACTTTGTCTCTCACTCTATAGCAATTAACCTTCCCTTTCACTCCTGACCCCACCAATACATTTGCACAATTAGCCAGTTTTGATACCATAGGGTCTAGGACCCACATGTATTATATCACCTCCTAGGTCACCATTTATAAATGATCAGTGCTGCAGAAACCCAAGTGCTCAATGTTCTCTGTAGAGAGAGTGTTAGCACAGAGCTTAGAGA


Gene Sequence:
>Vu_11715(+)
ATGGGCCACCGCTGCTGCAGCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAAAAGCTTCTCAGATATATCAACACACATGGACATAAAAGTTGGAGTTCTGTGCCAAAATATGCAGGCAAGCATTTCCCTTCTTGTCTGTGTTGTTTTTGTGATTATGAACGGATAAAAGATGATGTTGTGGTTTGCTGATTATGTGCAGGATTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTCAAGAGGGGTTCCTTCACGACTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGGTAAGATAAATTACAAGCACATAAAATATGAGAATAATTAGTAAAAGGGGAACAAGAACCTTAATAGACCAGAAATAAATGTATTATATGAGAGCAGTATTGTTTGTTTTATAAGATTTAGCACTCAACTAAGGATTAAAGAACTTCTGATCAGATAGATGAATGTATCTCTTTTGATATCCACAGTCATGGCCTTAATCTATTCAACACTACAAATCTTTGTCATATTTTTCTTCATCCTCTCATGTTAAGTTTTACCAGAAAATTACATTTAAATTGTTCTTGATAGACATTAAAAGAATAAGACATGCTTATGTGTATGGGAAAAGTACAAAGAGTTATAACATGATTTATTGTATACAGAAGAGAAAGTAGATAATTCAGTGCAAGGGCTTGCATATTTATCAGTGCATGTATTATTGGTATATGCTGCAGATGGGCACAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTTCTATCTTCTCATAGAAGAAGCTCAGCATCTACCATCTCCAATATGCATAAAAAATCCAATCCCATATTCATTATGAGTTCACACACAACAAATGCACCAGTGGAAACTACTTTTCAAACCTTTTCTTCATTACCTAAGCCTCCACTAAACATTGTTCAAACTCCCTCCAGCATTATTACATCTGAATATCAAACATCACCTATTATTTCAAATAATATCTCGTCAGATTTGCCTTATGAACTGTTAATCGACAACGGCTCCAACATTTGTTCACCTTCGTATATGAACCCCACTGCAGTTGAATTGTCGAACAATGAAAACATTGCTGATTGGGTTTCAAGGGTTAATGTTGATGATTTCAGAGGTCAAACACTTGAAGAGGGAACACAAGTGCAGGTGCAGCAAGAGAAGGACAAGATCTGTGAGGATACTGTAACTGATGTGAGAGAAGCTAACAAGGGCAATCTTGAAAGAAGTGCTTCTTTCGAGAGTTCTAACTTTGACTTTGGCTTGTTGGAGAGTGTACTTTCCTCCGAATTTATCTCTCATGATCTTAGTTGTATGGATGAACTTGCATGGAACTTTTAG