Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11693 LG3 4398918 4402951 PREDICTED: LOB domain-containing protein 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phloem or xylem histogenesis
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/G 4399233 synonymous_variant p.Asn78Asn
T/A 4399307 intron_variant
A/T 4399321 intron_variant
T/A 4399359 intron_variant
G/C 4399447 intron_variant
T/C 4399457 intron_variant
A/T 4399624 intron_variant
G/A 4399674 intron_variant
C/T 4399698 intron_variant
A/T 4399741 intron_variant
G/T 4399747 intron_variant
G/A 4399793 intron_variant
A/G 4399841 intron_variant
T/C 4399902 intron_variant
T/A 4399905 intron_variant
C/A 4399920 intron_variant
G/A 4399942 intron_variant
G/A 4400395 intron_variant
G/T 4400482 intron_variant
T/A 4400552 intron_variant
T/A 4400560 intron_variant
C/T 4400800 intron_variant
T/C 4400968 intron_variant
A/T 4400992 intron_variant
A/T 4401160 intron_variant
C/G 4401428 intron_variant
A/T 4401455 intron_variant
T/C 4401773 intron_variant
T/A 4401989 intron_variant
A/G 4402029 intron_variant
C/T 4402154 intron_variant
T/A 4402193 intron_variant
T/A 4402204 intron_variant
T/A 4402284 intron_variant
T/G 4402289 intron_variant
T/G 4402489 intron_variant
G/C 4402504 intron_variant
C/T 4402589 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11693.1
MKENGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAEVVHMRMSQFSPPSSDQHHHHQASLMPHEPSNSSSENMFQSSRVLSSQSKSFFGMDMVVDQTIMGQSLWSY*


CDS Sequence:
>Vu_11693.1
ATGAAAGAGAATGGTAGAAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGGTGCACGAGGGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTGAACAAAATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTAAGTTCAATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATTTCCTCTCTCCAACAACAAGTTGATGAGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTCTCACCACCATCATCGGATCAACACCACCACCATCAAGCCTCCCTAATGCCTCATGAACCCTCCAATTCATCATCAGAAAACATGTTCCAATCTAGCAGGGTCTTGTCTTCACAAAGCAAGTCTTTTTTTGGCATGGACATGGTCGTTGACCAGACCATCATGGGGCAATCTTTGTGGTCATACTAG


Promoter Sequence:
>Vu_11693::LG3:4402951-4404951(-)
ATCCATAAAAACTTAGTGAAAATATCTGCTTCTACACTCGAGTGACACCAAATTGCTAATGATTTGCAAGACAACATAGAGGACAAAATACCACCCAAAAGACTCTCCCTGAGCAACAAATCTGGGAGGTTAATCCATGTAAATATCTTCTTGCAAATCGTCGTTGAAGAATGCATTGTTGATATCTAGTAGATAAAGAGGTCATTGTTGAAGAGTCACCACGACTATTAAGCTAACAAAAACCATCTTTTCCATGGGAGAAAAAACATATATGGATGGGTCAAATACAATGGTGTCAAAAAAATGAGGTTAGAAGAAACAGCAATGGAAGAAGCCATGGATGAATAAGAGAGAGAAACCATACAAAATCAAGATTCTCCTATCAAGGCATCGAAAAAAGGAAAAAGAGCAACCTCGATGCTCTAAATAACTACTTGAGAGGAGACACTCTTTCTCCAACGCTCGATGCTCCAAAAAGGAAAACGAGCGACTCGACACTCTGAATTGCTACTAAACATGCCACCATGCACGATAGAAAAGGGAGCAAATCCACAACTTCAAAAGGAGTTGAGAACGCGTAGGAGCTTCGATGAAGGCGTTGTGATGACATGGTGGTCGCTTGGCTGAGACGATCAAAACCACGTGATCGTCGGTCAAAACTAGAACTTCGGTAGTGGCTGCAGTAGACAATGATGGTAGATGATGGTGCTGCCAGCAGTGGTGGGCGTAGTGGCTGAGGTAATAGAATTTTTTTTCCTCAAAAGAACCTTAGGCTCTGATACCATGTTAATAAGTGGACTTTAAACTTAATTCAATCTTACAAAACCATCTTGTGAGGTGATGTTTGCACCCACTTATATACTCTAAATTAAGTGGGGTTATCTCTAGTCGATGTGGAACTTCCAACACACCTCCCTCACGCCGAGGTATATACATTTCGAGCGTGAGACTAGACATTAATGGATGATCCGATAGCGGGTGGAACAATATGCACAACAAACAACAAATATTGCTAAGAAAGACTTTAACCATTACTCTGATACCATGTTGAATATAGTGAAAATTATATGTGAAATTAATCTCCCTTGTATTGAATATACATATGAAATTTTTTATTCATAATAAAAAAATATAAATTAAACCCAAAATACAAATAAAATATAATAATAAATTAACTAAAGATAAGAAAGAAATATAAAATAAAAATAATATATTTAATTTTTAATTATTATATTCCGCTTTTAGTATTTTAGTAGATAGCTATTGGGTTATAGAGTGGACAAAACTCAAAGTAATTAATTTGTTTTCTTTCACCTCGGGTGCTTACACTGTTCCCTTTAATTTCTTTCCTCTGAATCCCTTTAGTACCCTAAGTACTATACAAACTGATCTAATATCATCTGTCACCTTGTAAAGCTCAAAGAGAAACAAATTGAAGAAAAGGAAAATTCATGTGTCACTTTTGGATCAAAAAGAAAAAGTGCAGCATAAGAACACTTACCAATGTACTTGACTATGAAATGAACAACACCAACAACCCAAAATGCCAAAAATTTTATTGACAGCAAACACAATGAATAGAATGACTTGTTCTGAACCAAGCTCTCTCAAATAAACCAAGAACATTCAAATGGTGAAGGCAACAAAGCTTCCGATAGCGTGCCACAAAAATAATAAAATAAAACAGTGAGACAAAATATATTTTTCATGGTGGGGTCAAAATCTTATCAAGACAGATGATTTTGTCCGCACAATCTATTTCCTCTTCTTTTGTGGGACCCTTAAAGATTTGCTGTCACATAGTTTCTCTATATAACAACATCACCTCTAATCCCCTCTTAAGTCTACCTTCTCCTCTCTCTACCTCTCTTTTCTCTCCTTTTCCTATCTTCATTTTCACCCTCATTATTCCATCTTCATTAATTTGCTTCTAGCTAGGTTTCTGAAACAACCTTAATACCTCAGAGGGCTAGCACATTGTCTTGTTTTCCCATAAGAAC


Gene Sequence:
>Vu_11693(-)
ATGAAAGAGAATGGTAGAAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGGTGCACGAGGGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTGAACAAAATGCTACAGGTACAAATTCTTATGCACCTCCCCTTTCTCTATCATCGTATCCACGCATAATATTTCTGTCGTTTTCATCAAAATACGCTAGTAGAATACTGTTTTAGGTCCAATTCAACTTTTTCTATACATTGAATCAAATGCACAGTTGTAGAAAAATATTTCTAGGTTAAATTACGGTTTGGAATCATACTGGTGCCTGCATTAGGTCACTTTTATAGATAATTTCCTCTCTTACTGCCGTGCCAATTAAAAAACGTGAATATATTTTATGAAATTCTTGAATAGGTAAAAACAAACAAGGATTTTAATAATTATATTTTTCTACTTTTAAGAATTATTTTTCTGATAAATGAATTAATTAGTGAAATAGTATACACTCATACGACAACTTAATGACATATCTTGTGCCTAGTTGCTTTTTTAATTAAATTATTTTTCCCATCTTAACATAATTGGTTAAATAGAGCACCAAAGGTGTACCACTGTGTGCAAAACCACCTATAATGGAAAAAGTTATGTTAACACCACTATTCACAATAACTCCCATTTGACACTTATTTTTCTTGATAAAATATTATATTATAATAAAATATTAATGTATTTGATCGTCAAATGGAAGTATTGGTGTCAAATTGCAAGCTCTCATATCTAATATACTAAGTAAAGGTTACTCCACATATGAGAAGAACCATATTAGAGTAGCATCGGAGATCAAGAGACATGGCATTTATCTGTGTGTGGTGAATCTATATATACTCAAATTATAGCATATATACGACTTCCTATCAAAAATTTTTGTAAGTAACTATAATTAACCTTAAATTATGGAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGATTCTTTACGGAAGGTAGTTTTAGATTTTATATAACGAGTGTTTTTGGTAACTAATTTACCTAATCTTTTTACAGAAATTATCTAAATATCTTTTACGTATTTTCATGGGGAAAAAAATGTAATTTGAAATAAAACTAATTCTTAGAAAGAATTATATGTTAGTCTTTATATGTTTTTTTTCTTGCCCTGGTCCTTTTTCATTTTCCCAGTCCTTATCCAAGTAGATTAGAAGTGATTTAATAGATATGTAGATAATTTACCTATCAAAAAACAGTTATAGGGATCATTCATTCACTCTATTGATAACAATTTATGTTTTTTTTTCTTTCGTATTATTTGAAACAACCTTAAAAATAGATTAGTTTAAAATGATCAGTTTAAAATTAACATTCATTACAAAATAACTTTAACATACAGGTCTAGTTTATCTTTAAAAAGTTTATATTAGTTTTAGAAGTGATGCAAGCGCCTCATAGAAGAGTGAGAGAACACAAACAGCATGCTTTAAACTCAACATGAACAAATTATTTGCAAACTTTTTAGTTATTAGGTGAACGAAAGTGATTGATTTTACATCTAACAACTTGGCCTATAATTTCACTTTGGGAATGAAACTAACCCTAGTTCCTGAGTAACCAATCCTATTTTAACTGCCATCCTTTGAAACCGTACATTAAATTACTAAAGCAACGTACATCAGTGACCTCTCCATATGTTTCTAATAATTGCAGAGGTTGCCACAAACAACTCCAAAAGTTTTGATTTCTTAAATTGAAAGTAGTTGTCCAAGAACAGTGAAAAATTGTTTTTGTTTCTCCCATATTTACTACCGTTATAGTGGTTATAATTACAGTTGAGGAAGGTCCTTTTAAATAAACTGTTTCCAATTCTCATTCTTTGTTAAAGTAAAGTATTACTATAGCAGTAACACCCACCAAAGGATGAGAGATATATAAATTAGGTTTACCAGTTGAAGGAGTGTGAAGAGGATAAAGTGAAAAAGATGTTGCTAATTGCATCATTACTGGTGGTTATATGTAACCCAATTTGTTCAGCATCTATCTTTATGACCACCGCTAGGGTTTGGCTTTTTGTCTTGGACTCCTTGGGCAATGATAATTCCGTAAAAAAGAAAGTTTTAGTATGCTCATCTTTTCCTTTTGTCTCTAAAATCAGGGTTACATCGAAAGAGACATTAGAAATATGTCCAAAAGTGATGTTGATTCCCAGATAAAGATGTTTCAACCTGTCAATAAATTATTATTTCAAGTGAATTATTTTGTAAGCATGATACCTTCATGACATATTGACATATATATATGTCTAAATAAAAGAATGGTAAGAGAGTTGAATCCATTGAGCATGATCACAAGAATGTATGATTAATCAACCTTGAATATTCATCTGTTTACCTATAAACTTGCACGATTTGAAAGTCAAAATTTTACAGGATTACCTTTTACTTTCCCTAATTCTAGCATACAAACCAATCTCAGGGTTGCCTTTTTCGGTGGTTGTTAAGAAGTATATTGTATTTCAAAGTATTATGATTCTGAAATCGTTACACATAATATTATTGTCTCTATAGTCAACTGTTTGATATTTTTCTTTTCCACTCCAAAGGAACGAACTTCAACGTGCACCTTATCATCCCTTTTTTGACAAAGCATTTGATCAGTTTATTCCCAAACAACCCATTTGGTTTACATCATATCCCTCGATCTCTACAAATTCAAAAAGCTAGTTCATGCATCTTTGGTCAAAAATTCACAAGCATATTTATTTTTATTTTTTCCTAGTGATATGTTTAGGTACGTAAAGGCTTTTTCCCTCAAATTTTATAGCATTAACATGCGGACACACTAGTGCAAGCCACATATAAAACCTTTTCTTTTGCTCAACGGTCTAAACTCCCTATGAGCAAACAATCATTACCCTAAAAGTCACATACACGCCACATAATTATGAGATGTCATGTAATATGATAATTCACTTTATATAATTGAGATTCGATCATTTATATATGTTTCTTCCTATTTAATTTCTTACACTATTTTTAATGTATATATGGTTGAATAAATAATATATAGAGACGGAAAAGTAAAGTAAAGTTTGTTATGAAAATTAAATAAAATGTTACATGTGTTGGATGATTACATCGATCTAATGGGTGCTATAGTAGAAAAAAGTGATAAACATATTACATGTGGGGCGCACCTATTATTACACTATAACATATGTTGGTTAAACTAGTATAATATTTTGGTTAGATTAATTGGTATAATTGTTACTTTATTCATATTTAAAACAATATATCAATTATATAACACATCATCACATAAACATGAAAAGACCTTCTGAAACCCTATAATCATCACAAACCTTCTAATGACGTGAAAAATTAATTATCACTTAGCTATGATAGAGACACATGGCATCCTAAATTATTTTTCAAGATAACAAATGTTTGATTAAACCAATGCAATATTTTGGTTAAATTGATACAATGGTAGGTTAAAGTTTAAATAAATATGCAATTGTAGTGATATATATATCTATTAGCACTCTTTTAATATTTAAATTTTGAAAAATTGTAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTAAGTTCAATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATTTCCTCTCTCCAACAACAAGTTGATGAGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTCTCACCACCATCATCGGATCAACACCACCACCATCAAGCCTCCCTAATGCCTCATGAACCCTCCAATTCATCATCAGAAAACATGTTCCAATCTAGCAGGGTCTTGTCTTCACAAAGCAAGTCTTTTTTTGGCATGGACATGGTCGTTGACCAGACCATCATGGGGCAATCTTTGTGGTCATACTAG