Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11584	LG3	2886762	2888171	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, cotyledon development, root development, cotyledon development, cotyledon development, cotyledon development, protein phosphorylation, cotyledon development, auxin polar transport, protein phosphorylation, root development
Cellular Component	is active in	cytoplasm, nucleus, plasma membrane
Cellular Component	located in	nucleus
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
G/A	2886791	missense_variant	p.His461Tyr
T/C	2886806	missense_variant	p.Asn456Asp
T/C	2886808	missense_variant	p.Asn455Ser
C/T	2886879	synonymous_variant	p.Arg431Arg
C/T	2886882	synonymous_variant	p.Arg430Arg
C/T	2886883	missense_variant	p.Arg430Lys
G/A	2886984	synonymous_variant	p.Phe396Phe
G/A	2887497	synonymous_variant	p.His225His
G/A	2887665	synonymous_variant	p.Ala169Ala
G/A	2887680	synonymous_variant	p.Ile164Ile
G/T	2887731	synonymous_variant	p.Leu147Leu
A/G	2887842	synonymous_variant	p.Asp110Asp
G/C	2887872	synonymous_variant	p.Arg100Arg
G/C	2887874	missense_variant	p.Arg100Gly
G/T	2887884	synonymous_variant	p.Gly96Gly
G/T	2887979	missense_variant	p.Pro65Thr
G/A	2887991	missense_variant	p.Arg61Trp
G/C	2888028	synonymous_variant	p.Ala48Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11584.1

MEEPTLLFPDTDLDLSFTSTTTDRTSARTSLARSSSLTLSFNDRISTAEPSISVVNRHPHRSSDPNWSAIQAATMLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEAEILHSLDHPFLPTLYARIDVSHYTCLLIDYCPAGDLHSLLRKQPQHRLTLSVARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSLTFQTHNKPSRVGPTDGCFSCNCLPYRQHHQTFLAEFIAEPVAAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFLYELLYGTTPFKGCNKENTLRNIASCKDVRFVHVSEGEEPGMTEARDLIEKLLVKDPRRRLGCAKGATDVKRHPFFDGIKWPLIRTYRPPEVKGLVRRNRSHVSDHVSYRRKRWSWKRLSHVLRKCNLISNYSNNNNNCYHYVDSYKVN*

CDS Sequence:
>Vu_11584.1

ATGGAAGAACCCACATTATTGTTCCCAGACACAGACCTGGATCTCAGTTTTACCAGCACCACCACCGACCGCACCAGCGCCCGAACAAGCCTCGCCCGATCCAGCAGCCTCACACTCAGCTTCAACGATCGTATCTCCACTGCCGAGCCCTCCATCTCAGTCGTAAACCGTCACCCCCACCGGAGCTCCGACCCCAACTGGTCCGCCATCCAAGCCGCCACCATGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCATCTTAAGCTGCTCCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTGCGCGACTACGATGGCGCCAACTTCGCCCTCAAAGTCGTCGACAAAGACCTCCTCACCCCCAAAAAACTCTCCCACGCGGAAACCGAGGCCGAAATCCTCCACTCGCTCGACCATCCCTTCCTCCCCACGCTCTACGCGCGCATCGACGTCTCGCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGATCTCCACTCCCTCCTCCGCAAACAGCCACAGCACCGCCTCACCCTCTCGGTAGCGCGTTTCTTCGCCGCTGAGGTCCTCGTCGCCCTTGAGTACCTCCACGCTCTCGGAATCGTCTACCGCGACCTTAAACCCGAGAACGTTCTCTTGCGCGAAGACGGCCACGTCATGCTCTCGGATTTCGATCTCTGCTTCAAATCTGACGTGGCACCCAGCCTCACATTTCAGACCCACAACAAACCCTCTCGAGTGGGCCCCACCGACGGTTGCTTCAGTTGTAACTGTCTTCCCTACAGACAACACCACCAGACTTTCCTTGCAGAGTTCATTGCGGAACCCGTGGCGGCGTTTTCACGGTCTTGCGTCGGGACGCACGAGTACCTCGCGCCTGAGCTTGTCTCGGGTAACGGTCACGGTAACGGCGTTGACTGGTGGGCTTTTGGGGTTTTCCTCTACGAGTTGCTGTACGGGACAACGCCGTTTAAGGGCTGCAACAAAGAGAACACACTGCGCAACATAGCGTCGTGTAAGGACGTGAGATTCGTCCACGTGTCGGAAGGAGAAGAGCCTGGGATGACTGAGGCTAGGGATTTGATTGAGAAGCTGCTGGTGAAGGATCCAAGGAGGAGGCTAGGGTGCGCCAAGGGTGCCACTGATGTTAAACGACACCCATTTTTCGACGGCATTAAGTGGCCCTTGATTAGAACTTACCGGCCACCGGAAGTGAAGGGCTTGGTGAGAAGGAACAGGTCGCACGTGAGTGATCACGTGAGTTACAGGAGGAAGAGGTGGTCGTGGAAGAGACTTTCCCATGTCCTTCGGAAATGTAATTTGATTTCAAACTATAGTAATAATAATAACAATTGTTATCACTATGTTGATAGTTATAAGGTTAATTAG

Promoter Sequence:
>Vu_11584::LG3:2888171-2890171(-)

TTCATTTTAAAGATTGCTTTCTCCAATAATCTATTGATATTCCATACTCAAGGCATGAACTTTGAGATCACTGGTTAAGTCTTCAATTAATTATTCACATATCTAAAACTACATCTCTTCTTGAATTTGAGATTAGTAGTTATCAAGAACATGAACACGATATAAATGGTAAAATGGAAATTGTTCTCACACTGGTTAATCTACGTGACTTGTGATAATTAAGTAGAAAGTTGAAGTTCTAAGATATTTGTCAATTTTTTTGTTGACTTTGAGGTTATCTTCTAAAATTCAAATCATTGGTTTGAAGTTGACATGAAATCAATGAACAGTTCTAAGATTTTTGGCTTCCAAAAAAATTCTTCACTTTGTATATGAATGCTTTTATTTACCTTTTGGTAGGGGTATTAGTCAACATCATCTCCAAATTAAGATACAAGTAATTTGAATGGAGTTTTTCAAATAAATGATCACTTGAAATAAGTGATATAAAGGTGAAATGAGAATATTGGGCAGAAATGAGAATACTATATAAAGGTGAAATATCTTTAACCCACTATTTTAAGATTTTTGATAAAGAGTGGTGTCAATTCTTTATATAGTTGAACTTGTATTTCATGTTAGATTTATATAGACCCAACAATGATATCAGAATCGATAGTTTAATAATTATCTTAGTAACTGATTAAACGATGTTAATCCTTTGTATATCGTAAACATTCTCTTTCATAGAGCTAATATATAATTTAGTGTTTATATTCGTCAAATTTAAGGTGATCGCTTCACAAACTTGGAGTTGACTAAATTGTGGTAATGAATAAGAAAGGAACGTCGGCCATGCCCCTTTATTATTGTTTTCAATTGAATATTAACGCTTTCTTAAATATAACATTTCCTCATTAAAGAAGAGCAGTTGGATCTCTCTCATCACGAGGGATGGAGGCTCATAATTTTGGTGTAGCCTCCATTATTATTTAGCCACATTAAATACCTAAGGAAAGTTGAACCCATTATCTATTAATGATCTCTGAATTCTAGCGTTTTCTAAGTAATTTTAATACATCACCAAATGAGAAATTTTCAAATAACAAATTGTGTAGGCGACAATGTAGGGCCATTGCTGACCACGTGGCAGACAGCATCACTAACCCATTTCTTTCACGTAGGTCTCAACTCAACCCCTTAAGAACTTCTTGCCTTCATCTCACATGGGACCATCTCCGCCACCCATTTTCCTTTTTCATTTATTACCTTAATTAACCTTTGCACAAATAGTTTAGTCAGATCAAGCCTTCTATTTTAATCATTTTTTTATTACAATGCTTTCGTTCTGCATGCATTACCTACCTTTGTTCATTATCATGGACTATTTCCCCATAATTGTATATATATATATATATGACAAGATGTAAGAACTCCTTAAAGAAAAGAATGCATGACTGGATCAAATGTCATGTTCTTGTGGGAAGTAAAATATCACAATTCAGTCCATTTTTAAGGGCTTCTCATCACTACAGTTAACAAGATCCCACCTCCAACATGATACCAACTTCTTATCTGCTCTAGCTATTACATATTCATCTTTTCCAACAACGTTAAATAAATTTTTGTCATGCACACACTCAGCGTAGAAAAACCATGCAACAAAAACACACATTTTCATTTTCCAACATATGTATCTATGAACACTGTATCACTGTCACCGATTCACCAATGATATTATTACATAATTCAAAATTACCATGATTGTAATATTATAATAATGATAATAAGAATGTTAGTATAAAAAACGAAACAATAATAGAATATGTAAACTCCAGTTGGTCAACCTAACCTCTGTCCTCTGTCCTCTGTCCACTGTCCTGGCCCCCGCACCAGTTGGGTCAACTTCTTGAACCTTCGGACCCACCTTCAGTGTTCCCATTCTTTTATATATCAAAACGGAACCACCAACGTTAATGTCTCAGAAACAGAACTGCACTCTCGTACCCACAACAACAGCC

Gene Sequence:

>Vu_11584(-)