Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11557 LG3 2628790 2631281 PREDICTED: myb-related protein 330
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, lignin biosynthetic process, lignin biosynthetic process, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to light stimulus, lignin biosynthetic process, positive regulation of transcription, DNA-templated, lignin biosynthetic process, regulation of secondary cell wall biogenesis
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 2628928 missense_variant&splice_region_variant p.Ala47Ser
G/A 2628974 intron_variant
T/C 2629126 intron_variant
A/G 2629132 intron_variant
G/A 2629143 intron_variant
T/G 2629216 intron_variant
G/T 2629254 intron_variant
T/G 2629255 intron_variant
C/T 2629361 intron_variant
G/A 2629370 intron_variant
C/T 2629395 intron_variant
A/G 2629403 intron_variant
G/A 2629650 intron_variant
C/T 2629716 intron_variant
A/T 2629751 intron_variant
G/A 2629756 intron_variant
T/A 2629770 intron_variant
C/T 2629841 intron_variant
A/T 2629842 intron_variant
C/T 2629865 intron_variant
A/C 2629867 intron_variant
G/A 2629922 intron_variant
G/T 2629933 intron_variant
C/G 2629993 intron_variant
G/A 2630018 intron_variant
T/C 2630421 synonymous_variant p.Gly116Gly
T/C 2630608 synonymous_variant p.Leu179Leu
T/C 2630618 missense_variant p.Ile182Thr
T/C 2630696 missense_variant p.Val208Ala
A/G 2630703 synonymous_variant p.Gln210Gln
G/A 2630741 missense_variant p.Arg223Gln
T/A 2630764 missense_variant p.Tyr231Asn
T/C 2631028 missense_variant p.Phe319Leu
C/T 2631244 missense_variant p.Leu391Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11557.1
MGKGRAPCCDKTKVKRGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHRAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLSPKKTSESSTDESKPESTITSTSSSSSQSFFSTERPNSPKSTTPYTNEFCDQAEQLSMEDKIEQDSEKAVSSELLIGMTEDPKESSASFSCESNIVNSSQNVAQKPEETLASPLSVSIYTIETINIVNSGQKVAHKPEQQLASPSSYLGPYDVGHILEIPWEPDYEFWKLLDDDSPGSFQSKEVQLGEFSANQNMILGEEGVQDGEARKWTNDFENEFGVVGEIKESNKDHNFLPKNYAVEPQMDHTKAFNFDDMTEAESELDFCSIPLWLSSPQNTTLYFNTDQ*


CDS Sequence:
>Vu_11557.1
ATGGGGAAAGGAAGAGCACCATGTTGTGATAAGACTAAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGATCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGAGCTCTCCCAAAACAAGCTGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATTAATTATCTAAGACCTGATGTGAAGAGAGGAAATTTTACACCAGAGGAAGAGGAAACCATCATAAGACTTCACAGGGCCATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTCTGGAACACCCACTTAAAGAAAAGGTTGTCTCCTAAAAAAACTTCAGAATCAAGTACAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCCTCTCAGTCCTTTTTCTCAACTGAGAGGCCAAATTCACCCAAGAGCACTACACCTTATACTAATGAATTTTGTGACCAAGCAGAGCAATTATCAATGGAAGATAAAATTGAGCAGGATTCAGAAAAAGCAGTGTCAAGTGAACTACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCGGCTTCATTTTCTTGTGAGTCAAATATTGTAAACTCGAGCCAGAATGTTGCACAGAAACCGGAAGAGACATTGGCTTCGCCCTTATCTGTATCAATATATACTATTGAGACAATTAATATTGTAAATTCAGGCCAGAAAGTTGCACACAAACCAGAACAACAATTGGCTTCTCCATCATCCTACCTAGGACCTTATGATGTCGGCCATATTTTAGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCCTGGATCTTTTCAATCAAAGGAAGTCCAATTAGGTGAGTTCTCAGCCAACCAAAACATGATTCTTGGAGAAGAGGGTGTTCAAGATGGTGAAGCAAGGAAGTGGACCAATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATAATTTCCTACCAAAAAACTATGCAGTTGAGCCACAAATGGACCACACTAAGGCATTTAATTTCGATGATATGACAGAAGCAGAATCTGAATTGGACTTTTGTTCTATCCCATTATGGCTCTCTTCGCCTCAAAATACTACTCTCTACTTTAATACAGACCAGTAG


Promoter Sequence:
>Vu_11557::LG3:2626790-2628790(+)
GTATTTTAAAACTCGCGGATACCTGTGGATATTTGCGGATACCCGCAAATATTTAAAAAAAATATATTTTAATAAATTATTAAAATAATTTAAATAAAATTACAAAAAATATATAAAATATAATATAAATTAAATTAAATTTAAATTTAAATTCAATTTTAATTAAATTTAATCTTGTAAAATATAAATTAATGTTTATTTTAATTAAATTTAACTTAATAAAATATAAATTAAATTTTTATTTTTATTTTTTGCGGATAGCGGGTATCTGCGGGTACGGATAGTATAATACTCACACCCGACCCGTTTATAAGCGGGTATTAAAATATTCGCTACCCGCGGATTGCGGGTAGTAAATATCCACGTATTAACTATCCGTCGTAGATTTTATCTGCGGATATCTGCGGGCGCGAATTTTTTTACCATCCTAATCAAGAAACTTATGATATTTTACTTGGATAAAATATCTTAGGATTTTCCTACCGAAAGATACAAATATAACTGTGGGAAAAAAAAATAAAAAATAAAACCCAGGACAATGGACGACATATGTGGAAAGGAGCGATAAAGAGCAATTGAAAACAAATATAGAAATATTGGATATAGAATTAATGCTACTTTTGAAGTTCAGGAAAAAAAAGAAAGAAACACTATGCATCGAATTCATGTTGAGCATTAAATTTTCTACATAAGTAGACACCCATCTGTTACGTCATTTCATTATGCGTGTTTCATTGCTTTCGGCAAACATTGTTTATATAAAGAATACTGCTATACTTGGATAATTGGATTAACTAATGGATACACTAATTAACTAATGCAAGTGAATTATTATAAAAGTAAGGGTACTATGACAATGACACATCTTTATATTCATTTGACACACGATATAAGGATAAATAGTTATAAAAATATAAAGAATAATGATTCTTTGACACACCTAAACTTTTTACCTTCATTTAATATTATTCTTATTTATTTTTTACTCTCTTCTTTCTTGAAACAAAACAAAAGTTTACACTTTTATGATTATTTTATCTTTGTAATATGTGTCAAATGAATGTAAAATATGTCATGATATCATTACTCAAATATAAACTTTTATATTTAAAAAATAGAGAAAAATAAGAAAAGATAATTTTCAAATAAATATAAAAAATTTATGTGTGTCAAAAAAATATTTTTCTTATTATAATCTAAGATAAATTAGTGTCATAAGAACCTGAGTTGAAATCTTGGAGAGAATTCTACTTAACCACTACCGTTAACTTTGTAGAAATAATCGGCCAAAATTTTATTTTAAAATTTAATTTTAGGAAAACTTTTTTTGGAGGTCAACCATATTTTAGTTTGGTGTGTTGAAATTTAGGAGAATGTTGACTTCGTAAAGAAGGGAAGTGATATCAATTTTCAGAAAGTTGGTGGCTCTAATCCCATACGCGTATACATAACAAACCTCCAAACAAACAGACAAAACTCAAATCCTAAATCATTTGTGTAAACACAAATTTTAAAAGTTAGTATTGTACTGTGATATACTTTTACATTTATTTTATATATATTATTAGAATAAAATATCATAAAAATATAAATTTTTGTATTTTTTAAATAAAAAATAAGAAAGATAGTGTCAAATAAATTTAAAAAATTTAGGTTTGTTAAAGAATATTTTTTTGTATTTTAAATAGACAAACGGATATTTATTTATTACATGATTAAATATTAAAACATGGTTTACTTAGATTTCCTTCTATTTATTGCATAGGATCTCAGCATACTAACTTGTGGCATGACCCTTGTGGGTTCATTTCTTTGAGAGCATTCACTTTCTGCACCAGCTAGTATATGTAGGCAAAGGGAGACAATAGTGATGCATAGTATATGTTTGTGTGTATGTGTGAAAGAGAGGGAGAGAGAAAACTTACGTCATTGACAGTGGAAGAGTGCATATATATAGTAGGATCTAAAGGGTTGGGAAAATTTGTAATAAAAGATTATTA


Gene Sequence:
>Vu_11557(+)
ATGGGGAAAGGAAGAGCACCATGTTGTGATAAGACTAAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGATCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGAGCTCTCCCAAAACAAGCTGGTAATTACATTTCTTATTAAATGTGTGTATGCCTGTGATATGTTTGTTTGATTATGGATGTGTATGCGTATACGTGTGTTCATGTCTGTCTTTGATTATAGAATGCTGTCTTGGTAATTTTTGGTAAACTTTAATAAGAAACATTAGTTTCAAGTTTCAAGTTTCAACCTCTCTTTTGTGTTTGATCTCGTTCACTTTAGTGAACTATAGGAATGACAATTTTGTAATCTTTCAGTACGAAATTTCAGTGCATGATCATGGAAATTTTGCATTTGCATTATTGCTTCTGTGGAAACCTGTAATTTGTGATAAATCCAGTTTCTGCGTTTGCATTGTTTCATCCACTGTTTGTCTCATTCAAGGGCAATTCTCTGCTACCTACTGCTGATAGGAAAAATAATAGTTTGGCAGAATTTGGTGACTTTTGGTTTTCCTCATGTTGGTAAAGATAGTTTGAAGCATTGCTCGCTTATCACATCTATAATTGTGGGCCCTCCTTCTGCCTATAATTTCAATGAAAATATGACACATTTTAAATGACTAATTTCTGATTATGCATGTCCACCTACCATTAATATGGCCCGTCCATCACCATGATTGTCTGCTATAAATGGAAAATTACCATTATTATTGCACAAGGAGACTCTGCCATAAGGCTAATGGATTCCTTCATCACAGAAAAAAGAAATTATTTCAAGTAAGGGCACTGCGTTTCAAATTTGATGTTTCTTGCTGTGGATTATGACTAGTTTCCTGCATTCCTTAAAGTAGGCAAACTGTTGTTTCACGCTGTTCGGGTGTTTTGGTCTCTATAATTATTTCAGTCTGTTCATTGGTTTCATTTAGTCTAAAATAGGAGAGGCAAAACAAAAGTGTGATTAAATTAAAAGTGGACTAATGGGCATGAGGAATCACAAGCCTAGAAATTGTAAAATTCAAGAAGAAAATAAAAAAGTATTACTGTCTTATTCTACATATATTCACCTTGTACAAGAGTATTGGTGGTTGGAAGTTCTGAGTATACTAAAGCAATTTTCATGCCTTCTAAAGCATGATGCTAGCTACAGAGTATTGGTGTTTGGAAGTACTGATATTTGATTCTGTTAATACTGGTATAGATGTTATCAAAATTTTCTTATACTTATTTTTTGCATTTTAATAAGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATTAATTATCTAAGACCTGATGTGAAGAGAGGAAATTTTACACCAGAGGAAGAGGAAACCATCATAAGACTTCACAGGGCCATGGGAAACAAGTATGTCTCTTATGTCTCAAACCAGAAACAAGTTTTCTTGTAATGTTACTTTTTTCTTTCGTTTACTGATTTGTGGCATTACTAGATTATCTAACTATCTTTTCTAATGGGTTTCAGGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTCTGGAACACCCACTTAAAGAAAAGGTTGTCTCCTAAAAAAACTTCAGAATCAAGTACAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCCTCTCAGTCCTTTTTCTCAACTGAGAGGCCAAATTCACCCAAGAGCACTACACCTTATACTAATGAATTTTGTGACCAAGCAGAGCAATTATCAATGGAAGATAAAATTGAGCAGGATTCAGAAAAAGCAGTGTCAAGTGAACTACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCGGCTTCATTTTCTTGTGAGTCAAATATTGTAAACTCGAGCCAGAATGTTGCACAGAAACCGGAAGAGACATTGGCTTCGCCCTTATCTGTATCAATATATACTATTGAGACAATTAATATTGTAAATTCAGGCCAGAAAGTTGCACACAAACCAGAACAACAATTGGCTTCTCCATCATCCTACCTAGGACCTTATGATGTCGGCCATATTTTAGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCCTGGATCTTTTCAATCAAAGGAAGTCCAATTAGGTGAGTTCTCAGCCAACCAAAACATGATTCTTGGAGAAGAGGGTGTTCAAGATGGTGAAGCAAGGAAGTGGACCAATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATAATTTCCTACCAAAAAACTATGCAGTTGAGCCACAAATGGACCACACTAAGGCATTTAATTTCGATGATATGACAGAAGCAGAATCTGAATTGGACTTTTGTTCTATCCCATTATGGCTCTCTTCGCCTCAAAATACTACTCTCTACTTTAATACAGACCAGTAG