Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11505	LG3	1843172	1845133	PREDICTED: zinc finger protein WIP2-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	primary root development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of gene expression, regulation of transcription, DNA-templated, primary root development, anatomical structure development
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/A	1843386	missense_variant	p.Leu72His
A/G	1843599	missense_variant	p.Gln143Arg
A/C	1844107	intron_variant
G/A	1844108	intron_variant
T/C	1844114	intron_variant
T/A	1844174	intron_variant
T/C	1844241	intron_variant
C/A	1844338	intron_variant
A/C	1844565	intron_variant
G/A	1844633	intron_variant
G/A	1845107	missense_variant	p.Glu334Lys
T/A	1845112	missense_variant	p.His335Gln
G/T	1845117	missense_variant	p.Gly337Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11505.1

MTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYSYSNITNTTNTFSNIVQSETSSSSCAAPPSPPLREALPLISLIKHKENEPSNAGCEAEEEGHKKGDMDETLLTEDGDDETVAVALHIGLPSVDSSDLLGSGKISACAQMGEKGEVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEVEHDGDSSM*

CDS Sequence:
>Vu_11505.1

Promoter Sequence:
>Vu_11505::LG3:1841172-1843172(+)

CACAAAATCAATCAATCATCCACTCTTAGAAAATAGAAGATTGAAGTTTTATTAACTATTTTCTTACAAAACCATAAATATCAGTTCTCTTAAATTTTAGATGTAATTAGTTAGGGTTTCCATGTTATACTAGTAGATTATATTATATAGTTTTAATTTTTGTATTTCTAACTTTTTTCTTTTCGAATTTAATAACAATTTATTTGTATTCGTTTGAGTTCAACACTAAAACAACTTATTAGTTCTTATAAATTGTTGTTTTTATGTATTATCAAGTTTTCTCATTTTTATAAGTAAGACTTTCGATTTATATTTCATATCATATAGTCTCTAAATATTGTGCCTAATATGAGCTCCACTTGTCCAAAACGTGTTACTACTACTGGAAACTTCTATTGAGAACATTTTGAATAAAGGAATAGAATTCACAGAAGCTGTTCTAAGAAAAACGAGCAATGTCTTAATTATAAGCACAAAACGACACTGCAAACGTCATTTTCTACAGGTTGTGTGTTTTTGTCCAACTTTAACAGTACCATTCACTATGATTCAACCTAATAACCTTTTTTTATCACTTTGGCTCCAAACTATATGCTATTTATTGGTTTGGGTTCTATATTCTATCATTATTCTTCACACCACTCATCACCACTTCAATTTCATTCCACCTTATCAAATCTCACAATTAGTTTAAAAAGTATATAAATTATATGTTATGTGTTTGACTGATGTGCTAGAAAAAGTGGGAAAGCATGAACAGTATAATGGAAAACGAAGCATGTGTTGGAGTAAACTAAAAACATAGTTAGTGATTTAAAAGCTATGAAACCAATGAACTTCTTTGACTCCAAAATAACAGTGCATTTGATATTTTGTTTGATCAGACAAAACCCCAGAAAGTGAGAATGGTGGAATGAACAGTGTGTATGAGTATGCGTGCAAATGTAAGAAACACTAAACACGCCCAACCAAGCAAATGTTGGACGTAGCTAGGTTACTATATAAAATAATATCTATCTATCGTTTATTGAAGCAAGAGAATAAGAAAAAAGTAAAAAAAAAAAAAAAGAGAATGTTCTCTCTCTATATCTATCTATCTATCTCCTCCATCTTTCACGTACATGTATGTCTGCATGATCATTGGATCTGTAAGTGTTTCATTTCAACAACCTTTTTCATTTAAGACAAAGGTAAACTGAACTTAGGTTGTGTTTTGTTTTACTTGTATGTAAATAAGAGAAGGTTTACTTAAGAGGGCTTTTAAGAGATTCAAATGCTGTGAATAGAAAAAAAAAAGTAAGATTAGAAAGAGGAGGCACTAATAATGAAAGAGCTAAGATATCTGACAGAGACTGATGATTATTTATTAAACTGATAAAGGTTTCTTAGCGTTGTTAAAGACAACATACGTGTACGTAGGTGGTGGTGCAAACATCTCTATCTCTTGGGGAGACAACCAGCAATTGTCTTATCAATGACTCTATCTTTGGCTTTCCCACAAGCTTTTTTAACTTCTCTTATTGGCTTGCAGGGGGTAATTTCTTCACTGTTTTGTACTTCAACACATTCCTTTGCTTCCATCTTTTTAGTTCTTTTACCTTAAATTTACCCATATTGTTTTCTCTCCCTCTCACCCTCAAAACACTTTTGCTTGATCCAGTCTGACAGGTACAGACATGATTGAAATATAGTCTGTGATTAACGTTTTTGTTTCTATTATTGAAGGAAAGAGTAGTTCTTGTTCATTCAAAAGTTAATCTAACACTAAAAATACACCATGTACTTAAATTTCTTATAAAGTATAATTAAGAAAGAAAGGGTGGTGTTAGTACTTTTTTTCTATTAACTAAGAGAAGAATGAGACGACCAGGACAAAGACTATAACAAGTTGATTTGAATCCCTTATTGCTCTTTCTCTCTCTTCACATGCTGCAATATATTTATACACAACTCTTATAGCTACTGGCCAAAGATCAGAAAAACCATCAGTGCCTTCACTA

Gene Sequence:

>Vu_11505(+)

ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGTTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTATTCATACTCAAACATAACTAACACCACCAACACCTTCTCCAATATTGTTCAATCAGAAACCTCCTCTTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCACAAGGAGAATGAACCCTCCAACGCTGGCTGCGAAGCTGAAGAGGAAGGGCACAAGAAAGGAGACATGGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGTCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGGTATGCAATATGCTAATATTTTTTTCCTTGTACTCTTTATATATACATAATTATTAGATAAAATCCGGTTAATTTAGTTACAGTGTTTTTTCTCTTTCATGTAAAGTCTCTAAGTTTCGATCTTTTCTTTATTCACAATAATATCGATGATTCCTGCTGTGTTTCATCTTTTTGGTTTGTTATCCACCCTTTCTGCATGCTGTTCTGATCTTTTTCGATCTTATCTATATCTATCTATCCATATCTATATATGTATATGTGTGTGTATACGTGATTAAGTATTTGGTATTGGAGATACTAGAATGATGAAATTTGTTGTCTCAAAACATTAAGCATTTTTGAAAAGTATATTGTTCCTGGTACTTCTATGTCGCCTAGAATTTATGATATTACGCTGAGGAGGACTGAGAATAAGTCGAAAGTGAGACAAATCATGAAGTTACTAATGCCATCGTCTTCTGGATATATTCTTTTGCAATAGCTGATCTCGCTCCAGTTGTTTAAAACACAGTAAAAATTTCAAAGCCATGTCTATGACAAGATTCATATACATGGAATCACATTGGATCTCACTACCCTTCGATGTAATAAGACAAACCATGTTAAAATATGTGCTTGCAACTTGAAAGTTCCTCTAGTTGCAGCGCTGTAAGCCATGTATATGATGTAATTTGTGCGCTGTGCATGGAAACTTGAAACGTGATAATTTAACCTCACTCACTATTTGCCTTGTTTTGGCTGTTGATTTACTATAGTATTGTACCTTGTGATTAGGCAAATTATACAAGTTAATTGTACAAAAATTTCTGAACACAGCCTCCATTTCTCTTTCTATGGTAAGAAATCGGTTAAATTTGATAACTGATAAAGGCAGAAGAAGGAGAAAGATCTTGAAATAAAAAAGGTTGCTCTCTCTATGTTTTCATGGTTTTGCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGTCATGGAGCTGTTGATATTGATTGCATGCAGGAAGATGAAGCTGCATCCGAAGTTGAACATGATGGAGATAGCTCAATGTGA