Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11489	LG3	1600572	1602371	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/C	1601161	stop_gained	p.Ser404*
T/C	1601510	missense_variant	p.Ile288Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11489.1

MAALFVSLSLRAQILYVVLMFFTCIAAQSQQTNGTNFSCPSDSPPSCETYVTYITQSPNFLSVTGVSNIFDTSPLSIARASNIENEEDKLIPGQVLLIPVTCGCTGNRSFANISYEINPGDSFYFVATTSYQNLTNWHVVMDLNPTLSPNTLPVGIQVVIPLFCKCPSKNQLDRGIKYLITHVWQPNDNVSLVSNKFGASPEDILSENNYGQNFTAANNLPVLIPVTRLPDLIQSPSDGRKHRIGLPVIIGISLGCTLLVVVSAILLLYVYFLKMKSLNRSASSAETIDKLLSGVSCYVSKPTMYETGAILEATMNLSEQCKIGESVYKANIEGKVLAIKRFKKDVTEELKILQKVSHGNLVKLMGVGVSSDNDGNCFVVYEYAENRSLDDWLFAKSCSETSNSRTTLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMMSKIDVFAFGVVLIELLTGKKAMTTKDKGEVVMLWKDIWKIFDHEENREERLRKWMDPKLDNYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSSSTLERSLTSSGLDIEATQIVTSITAR*

CDS Sequence:
>Vu_11489.1

ATGGCTGCCTTGTTTGTTTCTCTTTCTCTCCGTGCCCAGATTCTTTATGTTGTACTCATGTTTTTCACTTGTATTGCAGCTCAATCACAACAGACCAATGGAACAAACTTTTCATGCCCTTCCGATTCACCTCCTTCGTGTGAAACCTATGTGACATACATAACCCAGTCTCCAAATTTTTTGAGTGTGACCGGCGTATCTAATATATTTGACACGAGTCCTTTGTCAATTGCAAGAGCCAGCAACATAGAGAATGAGGAAGACAAGTTGATTCCAGGCCAAGTCTTGCTGATACCAGTAACCTGTGGTTGCACTGGAAACCGCTCTTTCGCCAATATCTCCTATGAAATCAACCCAGGCGATAGCTTCTACTTTGTTGCAACCACTTCATACCAGAATCTCACAAATTGGCATGTAGTGATGGATTTAAACCCCACTCTAAGTCCAAATACTTTGCCAGTAGGCATCCAAGTTGTAATTCCTTTATTTTGCAAGTGTCCTTCAAAGAACCAGCTTGACAGAGGGATAAAGTACCTGATCACTCACGTGTGGCAGCCCAATGACAATGTTTCCCTCGTAAGCAACAAGTTTGGTGCATCACCAGAGGACATATTAAGTGAAAACAACTATGGTCAAAACTTCACTGCCGCAAACAACCTTCCAGTTTTGATCCCAGTTACACGCTTGCCAGATCTTATTCAATCTCCTTCAGATGGAAGAAAACACAGAATTGGTCTTCCAGTTATAATTGGTATCAGTCTGGGATGCACACTACTGGTTGTGGTTTCAGCAATATTACTGCTGTATGTATATTTTCTGAAAATGAAGAGTTTGAATAGGAGTGCCTCATCAGCTGAAACTATAGATAAACTACTTTCTGGAGTTTCATGCTACGTAAGTAAGCCTACCATGTATGAAACTGGTGCAATCTTGGAAGCTACCATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCTAACATAGAGGGTAAGGTTTTAGCAATAAAAAGATTCAAGAAAGATGTCACGGAGGAGCTGAAAATTCTGCAGAAGGTGAGTCATGGAAATCTGGTGAAACTAATGGGTGTGGGTGTCTCATCAGACAATGATGGAAATTGTTTTGTGGTTTATGAATATGCAGAAAACAGGTCTCTTGATGACTGGCTTTTCGCCAAGTCTTGTTCAGAGACATCAAACTCAAGGACCACGCTTACATGGTGCCAGAGGATAAGCATAGCAGTGGATGTTGCAATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACCAGCAGTAATATCCTTCTTGACTCTAACTTCAAGGCCAAGATAGCAAATTTTTCCATGGCCAGAACTTTTACCAACCCCATGATGTCAAAAATAGATGTATTTGCTTTTGGGGTGGTTCTGATAGAATTACTTACTGGCAAGAAAGCCATGACAACCAAAGATAAGGGTGAGGTGGTTATGCTGTGGAAGGACATTTGGAAGATCTTTGATCATGAAGAGAATAGAGAGGAGAGGCTCAGAAAATGGATGGATCCTAAGTTAGATAATTATTATCCTATTGATTATGCTCTCAGCTTGGCCTCCTTGGCAGTGAATTGTACTGCAGACAAGTCTTTGTCCAGACCAACCATAGCAGAAATTGTACTTAGTCTCTCCCTTCTCACTCAACCATCTTCCTCTACACTGGAGAGATCCTTGACTTCTTCTGGATTAGATATAGAAGCTACTCAAATTGTCACTTCCATCACAGCTCGTTGA

Promoter Sequence:
>Vu_11489::LG3:1602371-1604371(-)

CAAAAACCAGAGATGGATCTTCTAGTGGTAGCACAGGTAGCCCAATCAGAGTCAGAATAGGCATGAATGCGGAAGGAGTTATTTGCGGCATATAATAGACCAGAACCAGGAGCATTCTTTAAGTATCTAAGAATCCTCATGGCTTGTTGCATGTGAGGTTGGCGAGGAGTGGAGATAAACTGACTAAGTTGTTGTACGGCAAAAGTAATGTCAGGCCGTGTATGAGGAAGAATGGGCAGAGAATACAGAGGAAGGTGTGGTCGTGTGACACACTTGTAGTGTGTGCACCGTGGGAGAATGGGCAGTGAGAAGGAAGAAAAGAGAGTCTCCATGTTGTGTATTGTGTGCAAGAGAAAGTGTGTGAGCATGTGTACCGTGAAAGAGACAGAGAAGTATATGTGTTTGTTTGAGTTGTGAGTGTGAGAGATTAAAGTGTGGTGTTTGTATTTGTATGTTCTGGATAGTTTGTCCAGAAAATTTAGTTTATATATGAAGAGTATATTTCCCAGATAACATATAATTGATATTATAGCTCCCAGCTCGATTTCTACAAATCCTTGACATTGCAGAAAAATACATACTAATGCGTGACAGGAGTTGTTGTTATGGAAATAAAACAATTGCGAACTTTTTTTAAAAATTGTTTGTCACCTGTAAGAATGTGTGCTGAGATTTCATGTGCGACGGAATTCACACCCATCGTATAGGCCGATGGATAGCTCTAGCCCCCATTTTAAGCAAATGAATTAGAATAAATATTATAAACTCTTCTGAGATCTGCAGAGCTGACAGTCCATTCATCACCCTGCAATGCAAGCGGAAGAACCTTATTTTATTTCCTCACAACTCTCTTCTACTGCTGCAGCCTCTCTTCGTCTCTCCTCTTTCCAGAGACTCTTTACTAGCAACTCTTTGGTGGCAGAGTCAGGCACTAAACCAGAATTCTTCATGTCTTCAAAGAGCCTCCATGCTAGTGCAGCTCTATTTGACTTGCAATAACCTTGGATTAATACCTTAAATAAATAAGCATCAGGCTCAAGACCACTCTGCCTAATCATTGCAAAGAGCTTTTGTAACCCAACACCCCTTTGAATCCAAGGGTTCTTCTCTTAAAGGGAAAGAAGGCCGTGCACTCATACTGGGTGGTCCTAGCTGGACGAATCTCAACCATCCCCTTCCACTCCTCAGTGCCAAGTCCACTATGAAGGTAATGATGGAGGTTTTTGGTGGTGGCTGGAGCACTCAAGGTGGAGAGACCCACCACTCACAGCTGCTGCCCACTTCGTTGCTGGACGTGGAGCCCCTCTTCTTTCAAACGTGCAGCCGCCCCCTTCCCCACTTCTTCTTTTAAAAAGGACGTGCGGTCCTTACATTATTATTTGAGCAAAATCGAACTTTTCTTTCGTTAAACTTACTCTATAATTTCGTTTAATAATTCACATCTGATAGTATCATTTGATATTTCATCTGATAACAACATTTGATAAGCTTTTTAGTTATTTCGAAGTCTATTTTCAGCTAAATCTTACAGCCCCTGTACATGCAATATTCCTTCTATTACTATGTTGAATCATGTGTAAATTACAGTCGCTAATAATGGTCTTGGTAAGTCTGAGCAAACCTACCCATATCAGCAAGTTTAGTTGGTGTATTGGTGTCGGCTTGCTGGCTAACATCGTGCATAGATAGAACTGGTAGGAACATTAATTGGCCGTCCAAAGCTTTGCTTTGACATCACAGTACCCTATTACCAATTTTTTATATATCATGCGCATGAAGTGCATACAATTTGTCTAATATAAATATTGACGTGTCCACTGTGTCTAGGATTCGGACAGCCAAAAGGAAATATAGTTAAAGCTAATGAAACAAACAGGACCATATATTTATATTAAAACAAATGATACTTTTATTGATAAAGAACTCTTCATATCAACAACGCCGATTGCCACTGATAGTACACTGCCTCGTAACTTACATTTGATCACAACTTCACATCA

Gene Sequence:

>Vu_11489(-)