Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11453 LG3 1103889 1106057 PREDICTED: trihelix transcription factor ASIL2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
C/G 1103985 5_prime_UTR_variant
G/T 1104177 missense_variant p.Arg42Ile
C/T 1104343 synonymous_variant p.Cys97Cys
C/T,* 1104394 synonymous_variant p.Thr114Thr
C/G 1104430 synonymous_variant p.Arg126Arg
A/G 1104435 missense_variant p.Asp128Gly
C/A 1104488 missense_variant p.Pro146Thr
A/T 1104490 synonymous_variant p.Pro146Pro
A/G 1104511 synonymous_variant p.Pro153Pro
C/A 1105368 intron_variant
A/T 1105703 stop_gained p.Arg256*
T/A 1105996 3_prime_UTR_variant
C/T 1106004 3_prime_UTR_variant
A/G 1106032 3_prime_UTR_variant
A/G 1106036 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11453.1
MEEKSEKQDDSHPSLFFSDHATIKEENSPRKAIGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATTADASSWPLYSRLDLLLRGTGPISSLPPTPNPTPTPTIPPSFQPPHATTNSNQALVLLDPPSLAVSQAPPSAAPPPPTQNSHGSNGVERLVKEDGLGGKSCEHVSEKNVMDSDSSTPALYSEKEKVRCNKRKMKSEKNKRVRRNSNSNNNNQNSEDMEIAESIRWLAEVVMRSEQSRMETMKEIEKMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRSSS*


CDS Sequence:
>Vu_11453.1
ATGGAGGAGAAATCAGAGAAGCAAGATGATAGCCACCCGTCTCTCTTCTTCTCGGATCATGCCACCATCAAGGAAGAGAATTCTCCAAGAAAAGCCATTGGTGGTGGCAGTGATAGGCTGAAGAGAGATGAATGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACCAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAAAAAAGGTACAGATCAGAGTCTGCAACCACTGCCGATGCATCATCTTGGCCTTTGTACTCTCGCCTTGATCTTCTCCTGCGTGGCACAGGACCAATATCTTCACTCCCGCCAACACCAAATCCAACACCAACGCCAACCATACCACCATCATTTCAACCACCACACGCCACCACCAATAGTAACCAGGCTCTGGTGTTGTTGGATCCTCCTTCACTGGCTGTCTCACAAGCTCCTCCTTCTGCTGCTCCTCCACCACCCACACAAAACTCTCACGGATCCAATGGTGTTGAAAGACTAGTCAAGGAAGATGGGTTAGGAGGCAAGTCATGTGAGCATGTATCTGAGAAGAATGTGATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAAGAACAAGAGGGTGAGAAGGAACAGTAACAGTAATAACAATAACCAAAACAGTGAAGACATGGAGATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTGGTAATGAGGTCAGAACAAAGCAGAATGGAGACAATGAAAGAGATTGAGAAGATGAGGGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTGAAGAGAACTGAAATCATAGCCAACACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTCATCATGA


Promoter Sequence:
>Vu_11453::LG3:1101889-1103889(+)
AATAATAGATATTCTATTATTATTTTTGATATTAGAACAATATTAGAAATGTTCTCTTTCATAATTTAGTCCTATTGACTTAGTTTTATATTTATTTGTCTATTTACTAGGAAATAAATACTTTTATATAAATAATTTTATAAAATCATTTAATTTTTTATTTATATAGTGAATATAAAGATCCTTATTATTATGGAAAATGAAGATAAAGAACGAAATGAAAGAGGCTATAGGAGTACGTGGCAAAAAATGAGTGGTGGAGGAAAGCCTTCATGTTTGTTTTTGGTGACGTTGGCTAGCTAGCATGAGATTCTCACCACAATGGCCACCCAAAGTCGTCATCAGAAAGGTAATAGGAGTGGTAGCTTTGAGTGTAGTGGCTGTGTCTGCATCACCAAAACACCTTTCAAAACCCACATTAGCATAGCTAACAAAAGTGCTACCTGAGAAAGACAAGGAGAGAGAAGATACAAAAAAATAAAGAAGGGCTATAAAGTTTCATATTCATATAAAAGAATATAACTAATTATTCTATATCCCTAGAGAAAAAAATAAAACAATTTTATAATTTTATAATAGATAAATAAATCCAAATATTATTTTATAAGTGACTTTGTGAAGGTAAGTTAGATTTAAAATTTATTTTTTATATTAATAAATCATTTTGTATAATTAATGTTAAGAAGTGAACTTTAAGTTAATCGAATTTTATAAAATTAACTTAAAGTATATTTTTTAATATGGTATCAGACCATAAGTTAATATTTAGTCTCACGTTTTAATGTATGTCCATTTCTTAACATGTATCAGATCATTTATTAACGTTTGAGGTGTGAGGGAATATGTTGAAAGTCTCACATCAGTTAAAGAAAAAGTCAATTTATAATATGCAAACTTCATCTTATAAACCAGTTTTGTAGGATTGAACTAGGTTCGAGTTATCTATTGAAATAAAGTGTATGATTTAGAAGTGAATTAAAGTGTTGTTTTAAGTGAGGGGAGCACATTGACTGGTGGTGGAGGAAGTTGGATTTTGAGGGTGGTGGATGGTTGTGAAAATATTAGTGTGATGAGGATTCTGAGGGGAGTGGGTGACAGACCCACGTGACTGACCCACCATCACCACCACCACCCTTCTTCTGCTAGGCCCACTAGATGTCATGCTTGGCTTCATATCAACGCTATCAGCCAAACAAACTCTACCAAAACCAATACACTACACTAAACTTTCCAATTTAGACTCAATTAGCCTCTTCCTTAATCTCAATTAACCTTTTACAAAAACACTCTACAACCACCAAACTCAAACTTATGCACACCTACGTTAACTATATTTCTGAATGTTGTAGTTGACATGGTTAGATATTCTATATTGATTAGAGACAAACCATATTCATTGTATATAAATTCGTGCAAACTTTACTAGTTTTTTAAGATTGAATTAAGTAAAACATTATTCTGTCAGAGATTAGATAAATCAAGTCATAATTAAATTAATAGCTTTTTGACTATTATGCTCTTAAATATAAGGAATTTCACCTTTACTCTTAACCATAGCTTTTGATACAGTTGTAAACTATTCATTCAATAATAAAACCTTTCGTATTATTACTACAGAATCAATTTTTAAATTGTTTGTTGTTTTGATTATATTAGTTTGTATCGGAAGTTTTTTGGAATCTGACAGACAGTCGTATTTATTTACAGTATAAAAGAAGTTTTGTTGTATATAGATAGTTATCTGATCTAACTCAAACAACTATTTTCAATACAAAATCTTTGTGATTTGTACAAAGAAAAACACCAGAAAACTAAGAGGCAATCCTATTATAAGAGCTTCATTGTCGAGTCACAGTTGCAATAATTAACTAGGAATTAAAATCTTGAGGTAACAATATGGAGCACCACCTATTTGTAAAAAAGCAAGAAAAAGAAAGGTTGAGGGCATTGACATGATTAAGTCCTTTGACAAAAGGTGAACATTTTTTTTTTCCTTTCCA


Gene Sequence:
>Vu_11453(+)
ACCGCCCACTAGTGCTATATTTTCCATTTTTCTGGTTCTTTTTTTGTTTCTAGCTCTCTTTCTAATGCTAGTGGTTGTATGTGATGGTCTGAGAGTCAAGTTTGAAGCATGTTAGCAGCTAAAGAGAAAGGGTTAAAAGCTTTGTAGTAGATGGGGGATGAGAGATGGAGGAGAAATCAGAGAAGCAAGATGATAGCCACCCGTCTCTCTTCTTCTCGGATCATGCCACCATCAAGGAAGAGAATTCTCCAAGAAAAGCCATTGGTGGTGGCAGTGATAGGCTGAAGAGAGATGAATGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAACAGAGCCAAACTCAAGGGCCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACCAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAAAAAAGGTACAGATCAGAGTCTGCAACCACTGCCGATGCATCATCTTGGCCTTTGTACTCTCGCCTTGATCTTCTCCTGCGTGGCACAGGACCAATATCTTCACTCCCGCCAACACCAAATCCAACACCAACGCCAACCATACCACCATCATTTCAACCACCACACGCCACCACCAATAGTAACCAGGCTCTGGTGTTGTTGGATCCTCCTTCACTGGCTGTCTCACAAGCTCCTCCTTCTGCTGCTCCTCCACCACCCACACAAAACTCTCACGGATCCAATGGTGTTGAAAGACTAGTCAAGGTAGAGATAGATTATCATATGATGCACAATTTTTCATTCTGGGTGGTCTTTTATTTAACTCTGCCTTCATTCTTTTGTTTTTCCTTTTATGATCATGACTCATCCATTTCAGAATTATGTTTAACTTGGTGAAGTTAGCACTACATGGCTCAAAACCTTTTTGCTAATTATTCAGCTTTATGTTGTGAGTGTAACATTCTGTTCATAAGAGTAAAACTGGAAATCATATCACTAAACTTGTTCATGAAAAAATGTATATATGATTGTTGCTCCAAGCACCTTGAGTTTCATACAAAGAGAAAAAAAAAATGTATCATTGATTTTCTTTGCAACAGAAGGATGACAATTCACAGAAAGCAAGTTAAACTCATCTCTTAAAGAAAGGTACCAAACATGAACTGAAAAATGACATATTCAAATAGTTGTAATACACTCTACTTAAAAATTACTGTCAGTAAAAGTCACACTGTCTGTGATATAATTATAAACTGTTATGTATTGCGAATTAATTTATTTTACAATATAACTATTTCAAAATTATGTTATCTTGAAACACTGTATAAAATTTTACATTGATAACTCATGTTAAAATAGTTAATCTATATATTAAGTAAAAGTTACCAAGACCATCATTATACTAAATAAGCATTATTATACCAGAAAATCATTTCAAGGGACAAAAAAACAGTGTCTTAAACTGCAGGTGCTAGGTTGCTACCTATGAATAAAACTTAACCTTATATTATGCAGGTAAAATAGACATTAGAACAGACATAGATGGTTTGAGTGTGTTACCATTGTGATCTTATGTTTCAGAATATTATATATATAACACACACACACAACCATATTATATATATATTATTAATGTTTTGGCATTAATAGGAAGATGGGTTAGGAGGCAAGTCATGTGAGCATGTATCTGAGAAGAATGTGATGGACTCGGATAGTAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGAGATGCAACAAGAGGAAGATGAAAAGTGAGAAGAACAAGAGGGTGAGAAGGAACAGTAACAGTAATAACAATAACCAAAACAGTGAAGACATGGAGATAGCAGAAAGCATAAGGTGGCTAGCAGAAGTGGTAATGAGGTCAGAACAAAGCAGAATGGAGACAATGAAAGAGATTGAGAAGATGAGGGTTGAAGCTGAGGCAAAGAGAGGGGAGATGGAGCTGAAGAGAACTGAAATCATAGCCAACACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTCATCATGACATGGTTCTGTGTGTACATCAACATGATATATATAGATATATATATATATAGATTGAAGGAGGAAGAAAG