Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11444 LG3 1044327 1045569 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 1044428 synonymous_variant p.Leu34Leu
T/A 1044530 stop_gained p.Cys68*
C/T 1044635 synonymous_variant p.Asp103Asp
G/A 1044790 missense_variant p.Gly155Glu
T/A 1044919 missense_variant p.Val198Glu
G/A 1044920 synonymous_variant p.Val198Val
C/A 1044937 missense_variant p.Ala204Asp
T/G 1044968 missense_variant p.Asn214Lys
C/T 1045000 missense_variant p.Ser225Phe
A/C 1045061 downstream_gene_variant
T/A,* 1045067 downstream_gene_variant
T/G 1045068 downstream_gene_variant
A/G,T 1045071 downstream_gene_variant
T/A 1045086 downstream_gene_variant
C/T 1045104 downstream_gene_variant
T/C 1045113 downstream_gene_variant
A/T 1045150 downstream_gene_variant
G/A 1045154 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11444.1
MSMLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCGAAAGGNTTTTNYWNLKMCPEVNPPKKGVINMDDDEEEDDERHHHHKGMMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVAPAGGVGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKNRECSSAIGLPNNNAYPASAT*


CDS Sequence:
>Vu_11444.1
ATGAGCATGTTAGGCCTTAGAGACTTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAGATTCAAGACTGTGGTGCTGCTGCTGGTGGCAACACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGATGATGACGAGGAGGAGGATGACGAGAGACATCATCACCATAAGGGTATGATGGAGAGCGAAGAAAATGGAATTTATGGACCTGACTTCCGAGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGCGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAAAATGCCACTGCCACTTCTCACAGCTCCAACTCCAATGCTACAACACCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCACATCAGTGGCCATGTCTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAGCTGGGAAACAATTGCAGTGGCAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACAATGCATACCCTGCTTCTGCCACCTGA


Promoter Sequence:
>Vu_11444::LG3:1042327-1044327(+)
ATATATATATATATATGCACGTATCAAGCAAGTGACTTTTTCGCGGTAAAAGACAAAAGGTCTCATTTTATAAAGAATAGAAAGATATTCAAATCATTTAATAATAAAAATTGGAAATTTTCTAGCAAGAAAAAGGAAATTTAACTATTTATTGAAAGAGAAAAACATGAGAAAGAAATTTCTTTCTCATCATTCATAAAAGTAAGAAAACGTTAATTCAGTTTGGTTTAGATAGAATTTTACACCACTTAAATTAGAAAAATGATTATGAACATCAAAAGAGTCCATAAATATTTAGAAAGAGTAAAAATGAGAGGTTTATAGTTTTTTTTTTAGAAAATAAAATAAAATAAAGAAACAAGTACATAATAAGTGTAAATAAAATATAGGTGTATACGAATCACTCTAGCTTAAATAAGCTGTGGAAAATTGTTCTACCTGTGAAATGTATACCAGTGTGGCGACATTAGTAATTAGACGTTTTACATTTATCTGGAATAAGATTAAATTTGTAGAATATATATAAGTAGAAAATGTTATAATGAAGACTGAGTTAATATTAAAATTCAGTCTTTAATTAAAAGAAAAGGTATTATTAGGTGATTAGAAGAAATAATAACGATGTATTGGTTCGTGATGATCATGTATTGGTTTCTGATCATGACGTATTATTTTGTGAGATAAAAAGATAGGTAATTATATTTATTATAAATTTAAAATTGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGCCGTTTCTGGTTTTCGTCCATCTTTCAAAGTAAAGTACAATTTAGTCCTCATTCTTTTTGAAACGTTCGTTTTAGTCATCGGAATTTTGATTTTAGTCCTCATTTGTTGCTAAATGAAGACCAAATTTTTAAAAAGTGTTTATTTTTCGAGGATTAAAACGAACGTTTCGAAAAGAATGAGTGACTAAATTGTACATTACTTTGAAACAGGGACGAAAACCAACGGCCAATAGTTTAGGGACTAAAAACATATTTAACCCTTTAAAATTTTGTTATGATAATGAATGAATTATATCATTAACTTCAGCGTCCGAATAATTTTAATAAATATATGTTTCATATACGATTTAGAGTTGAAATATAAAGGATTTAAGAAAACTTTGAAAGAGAGATCTAAAATGACGTTTAGCAACCTGAAAAAAAACTGTGTAAAAGTGTTTTAACTGTGATTCTCAACTCTATACCAGAAACAATATGTATTTTTAAGGTGAATTAGGAGAAAAATTAAAGAAGAAAGCAGGAAATTGGTTGAGTTTTCCGTTTTTGTTTTGTGTTATTTGAAAATAGAAAAGGCCAATTGTTGTGCAATTTTGCTTATTTCTCTAGGTTCCGTTTGCAACAAAACACAGAAGGCCCCAATGAGTGTTCTCTAAAAATGAATTGAAAACAAAAAGGTGCAAGAGAAAATCTAATCCTTAACCTACACATGCGGGCACAAAAATTGCTCCCTAGCACAAAACTTCAATGATAATTATTACTCACCCTACCAATCCAAGAATCTCTAAGTGGACTTTCAGTGTCAGAACCTGTAGCAGTAGCCTTCTTCGTACCCCCAAAAAATCACCTTTTCTCAATCCCACTATGCAAAACCACCATCATTTTTTCACCATTTTTTCACAAATTTAACATATATGGTTAAACTCATTAACCAAATCAAAGTGTAAAAAATGAGATAAAACTATTCAAGGAATTATGGTTTTCTCCATCATGGGATTTTATTATTATTTCTTCCCTATCTTTGCTTTTTAAAATTCAAACCATGTATAACATTTGCATCAAAAGAATGGAAACTCATGTTCTGTGTTGCAATTCAATTCTCTCCATATAATAAGATAAGATCTCCATGTATACTTTCTTCATCAACACCAGCTAGCTCCATAAGATAAAGATCTCAGAACTTTGAAACATACCCTTTTTCCAAGAACCAGAACCTCAATCTCAGAGCTTGTGACTTGTTTGTTCCAA


Gene Sequence:
>Vu_11444(+)
ATGAGCATGTTAGGCCTTAGAGACTTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAGATTCAAGACTGTGGTGCTGCTGCTGGTGGCAACACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGATGATGACGAGGAGGAGGATGACGAGAGACATCATCACCATAAGGGTATGATGGAGAGCGAAGAAAATGGAATTTATGGACCTGACTTCCGAGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGCGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAAAATGCCACTGCCACTTCTCACAGCTCCAACTCCAATGCTACAACACCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGGTGCTTTCCCTTTCACTTTCATGTTCTTTCACTCATCAAAGAAATTAAGAACAACTTTTAGTTTTTATTTTTCATAGTTAAATGGTATCAAGCAGTAAATTTTGGTGTGATTTGATCGGTGTAACTTGTATGCCATAAATTTGTGGTTTTTAGAAGTGATTAGATGAGAGTTGTTGGATGGAAGAATCTGGTATGATAAATTGAAGTTTAAGATGAATTTGAGGCATTATGGGGTTGAAATGATTCTCTGGAATTGCAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCACATCAGTGGCCATGTCTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAGCTGGGAAACAATTGCAGTGGCAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACAATGCATACCCTGCTTCTGCCACCTGA