Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11380	LG3	334238	337741	PREDICTED: putative disease resistance protein RGA4	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response
Cellular Component	located in	extracellular region, extracellular region
Molecular Function	enables	ADP binding, protein binding, ADP binding

SNP	Position	Effect	Amino acid change
T/G	334264	missense_variant	p.Asn1160His
C/T	334370	synonymous_variant	p.Leu1124Leu
A/T	334383	missense_variant	p.Leu1120His
T/A	334438	stop_gained	p.Lys1102*
C/T	334460	synonymous_variant	p.Ser1094Ser
A/T	334466	synonymous_variant	p.Ala1092Ala
G/A	334571	synonymous_variant	p.Leu1057Leu
A/G,C	334619	missense_variant	p.Asp1041Glu
T/G	334640	synonymous_variant	p.Leu1034Leu
G/A	334642	synonymous_variant	p.Leu1034Leu
C/A	334656	missense_variant	p.Gly1029Val
C/T	334661	synonymous_variant	p.Glu1027Glu
G/A	334665	missense_variant	p.Pro1026Leu
A/T	334681	missense_variant	p.Tyr1021Asn
A/T	334697	synonymous_variant	p.Leu1015Leu
A/G	334741	synonymous_variant	p.Leu1001Leu
G/A	334751	synonymous_variant	p.Tyr997Tyr
G/T	334757	missense_variant	p.Ser995Arg
C/T	334758	missense_variant	p.Ser995Asn
T/A	334763	synonymous_variant	p.Ile993Ile
T/C	334830	missense_variant	p.His971Arg
T/C	334845	missense_variant	p.Lys966Arg
G/A	334864	missense_variant	p.Pro960Ser
T/A	334866	missense_variant	p.Asn959Ile
T/A	334867	missense_variant	p.Asn959Tyr
T/A	335111	synonymous_variant	p.Leu877Leu
T/G	335156	missense_variant	p.Glu862Asp
A/G	335226	missense_variant	p.Ile839Thr
G/C	335232	stop_gained	p.Ser837*
T/C	335372	synonymous_variant	p.Leu790Leu
T/A	335502	missense_variant	p.Glu747Val
T/C	335649	missense_variant	p.Asn698Ser
T/C	335721	missense_variant	p.Lys674Arg
C/T	335816	synonymous_variant	p.Leu642Leu
G/A	335851	synonymous_variant	p.Leu631Leu
G/A	335954	synonymous_variant	p.Thr596Thr
C/T	336040	missense_variant	p.Gly568Ser
C/T	336049	missense_variant	p.Gly565Ser
A/T	336101	missense_variant	p.His547Gln
C/T	336105	missense_variant	p.Arg546Lys
T/C	336106	missense_variant	p.Arg546Gly
T/A	336276	missense_variant	p.Gln489Leu
G/A	336281	synonymous_variant	p.Phe487Phe
G/T	336301	missense_variant	p.Leu481Ile
A/T	336413	synonymous_variant	p.Gly443Gly
G/T	336472	missense_variant	p.His424Asn
A/G	336519	missense_variant	p.Leu408Pro
C/T	336679	missense_variant	p.Glu355Lys
G/T	336755	synonymous_variant	p.Ser329Ser
C/G	337086	missense_variant	p.Ser219Thr
C/T	337136	synonymous_variant	p.Val202Val
G/C	337236	missense_variant	p.Thr169Ser
G/T	337425	missense_variant	p.Thr106Asn
T/C	337426	missense_variant	p.Thr106Ala
G/T	337427	synonymous_variant	p.Ala105Ala
T/A	337457	missense_variant	p.Arg95Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11380.1

MAVECMSGAFLAAAFQVTLDKLASRDIQDYFHGSKLKDKMLKKLDIVLNSINQVLEDAEERQYKTSNVMNWLDQLKEAIYEAELLLDEVANEASRQKLEAEFQPATSKVRGFFKAFVNPFDMEIASRVEELLENIQFLASQKDMLGLRKGIFSGNEVGVSWKQSKQLPTTSLVDESSICGREEDKEEIIKILLSDNVTCNQVPIISIVGMGGMGKTTLSQLVYNDQRVLDQFDLKAWVYVSQDFDVVAVTRAILKAFGSKGAEEKDLNLLQLELKQRLMGKRYFLVLDDVWNEDYSSWGVLQIPFVYGPSGSRILITTRNEKVALVMNSSHLYHLKPLEKEDCWKLFSDVAFHDEDATKYPYLVSVGSKIVDKCGGLPLALKALGNILRVKFSQHEWVKILESDMWQLSDNDANINPALRLSYHNLPSYLKRCFAHCSIFPKGYEFDRDQLIQLWMAEGLLNCCQINKSEEELGIEFFNDLVARSFFQQSRRRASCFTMHDLLNDLAKSVSGEFCSQISGSLEKIITKRARHIWSSKINIDDKFLRHISKCNRLRCFVAFKWEFGRGGLINTDKQRILLSTLKYLRVLSFHDCLLTELVDDIGNLKLLRYLDLSYTKIKRLPDSICRLHNLQTLLLLWCYHLDELPIDLHKLVNLRHLDLRMSGINKMPNHIGKLKHLRTLTSFFIRKHDVKELGNLNNLQGTLSIFRLENVTDPADAMEANLKGKKHLDGLVLNWGNKFGRCNENEDSIIERQVLEALQPNGNLKKLSVLRYDGTSFPRWFGGSHLPNLVSIALTESKFCFVLPPFGQLPSLKELSISCFYGIEVIGPEFCGNDSSNIPFRSLEILKFEEMNAWKEWCSFEDHNEEGQGLSCLKELSVRRCPWLRRALPQHLPSLQKLEICECPHLEDSVPKAVSIHEMKLRLCEKLFLKDFPSSLKKATIHGTCIIEACLHQILVNNPFLEELKIHNFHGLNKKWSSLDLHRHDSLVTLSITSWYSSSLPFALHLFSNLHSLLFHDCPYLESFPEGGLPSSLRKLEIEDCPKLVASREKWGLFKLHSLTELRVSDDFENVKSFPEDGLLPPTLSVLYLIACSKLTHTNYKGLLHLKSLNSFYILCCPLLQSLPEAALSNSLSVLYIHDCPLLKQRYQRDGEHWRKIHNIPSVIIS*

CDS Sequence:
>Vu_11380.1

ATGGCAGTAGAGTGTATGAGTGGGGCATTTCTGGCAGCTGCCTTTCAAGTGACTTTAGACAAGTTGGCTTCAAGGGATATCCAAGACTACTTCCATGGAAGTAAACTCAAGGATAAGATGCTCAAAAAGCTAGATATTGTGCTGAACTCCATCAACCAAGTGCTGGAGGATGCAGAGGAAAGGCAGTACAAAACCTCAAACGTGATGAACTGGCTTGATCAGCTGAAAGAGGCTATATATGAAGCAGAATTGCTGTTAGATGAGGTTGCCAATGAGGCATCAAGACAGAAGCTGGAAGCTGAATTTCAGCCTGCCACTAGCAAGGTGAGAGGCTTCTTCAAGGCTTTTGTTAATCCATTTGACATGGAAATTGCATCTAGGGTTGAAGAACTACTAGAGAACATACAATTTCTTGCAAGCCAAAAGGATATGCTAGGATTAAGAAAGGGGATTTTTTCTGGCAATGAAGTTGGAGTCAGTTGGAAACAATCCAAGCAATTGCCAACTACATCCTTGGTGGATGAATCTAGCATTTGTGGTAGAGAGGAAGATAAAGAGGAAATCATAAAGATTTTACTTTCAGACAATGTCACATGCAATCAGGTGCCCATAATTAGTATAGTTGGAATGGGAGGGATGGGTAAGACCACCCTTAGTCAGCTTGTGTATAATGACCAAAGGGTACTAGATCAATTTGACCTTAAAGCTTGGGTCTATGTTTCACAAGATTTTGATGTTGTTGCTGTCACAAGAGCAATTCTTAAGGCATTTGGGTCCAAAGGAGCAGAAGAAAAAGACTTAAACCTACTTCAACTTGAATTGAAGCAGAGACTGATGGGAAAGAGATATTTCCTTGTTCTAGATGATGTTTGGAACGAAGACTATTCAAGTTGGGGGGTACTGCAGATCCCCTTCGTTTATGGACCTTCAGGAAGTAGGATTCTTATTACCACTCGTAATGAGAAGGTAGCATTGGTCATGAACTCCTCCCATCTATATCATTTGAAGCCATTGGAGAAAGAAGATTGTTGGAAGCTATTTTCAGATGTTGCATTTCATGACGAGGATGCCACCAAATATCCATATCTTGTATCAGTTGGCAGTAAAATTGTTGACAAGTGTGGAGGATTGCCTTTAGCTTTGAAAGCATTGGGAAATATCTTGCGAGTGAAATTCTCCCAGCATGAATGGGTTAAGATATTGGAGAGTGATATGTGGCAACTATCTGACAACGATGCCAACATTAACCCTGCTCTTAGATTGAGTTACCATAATCTCCCCTCCTATTTGAAACGCTGTTTTGCTCATTGCTCCATATTTCCAAAGGGTTATGAGTTTGACAGAGATCAGCTAATCCAACTGTGGATGGCAGAAGGTTTGTTGAATTGCTGCCAAATAAATAAGAGTGAAGAAGAGTTAGGCATTGAGTTCTTCAATGATCTAGTAGCAAGGTCATTTTTCCAACAATCAAGACGCCGTGCTTCGTGCTTCACTATGCATGATCTTCTTAATGATTTAGCAAAATCTGTCTCAGGAGAGTTTTGTTCACAGATAAGTGGCAGTTTGGAGAAAATTATAACCAAAAGAGCACGCCACATTTGGTCTAGCAAAATTAACATTGATGATAAATTCTTGAGGCATATTAGTAAGTGTAACAGATTACGTTGTTTTGTGGCATTCAAATGGGAATTTGGCAGAGGAGGCTTGATCAACACTGATAAACAACGTATTCTGTTGTCTACATTGAAATATTTACGCGTGCTATCCTTCCATGATTGTCTTCTCACCGAATTAGTTGATGATATAGGCAATTTAAAGCTTTTGCGTTATTTAGACCTTTCGTACACTAAGATTAAAAGATTGCCTGACTCCATTTGTAGGCTGCATAATCTGCAGACACTGCTACTATTATGGTGCTATCATTTGGATGAGCTTCCCATAGATTTGCACAAACTTGTCAACTTGCGTCATCTTGATTTACGTATGAGCGGGATAAACAAGATGCCAAACCACATAGGAAAGCTGAAACATCTTCGCACACTGACTAGTTTTTTTATCAGGAAGCATGATGTTAAGGAATTGGGAAATCTCAACAATCTTCAAGGAACACTTTCAATTTTCCGGTTAGAAAATGTCACCGATCCTGCGGATGCCATGGAAGCTAATCTGAAAGGTAAAAAGCATTTAGATGGATTAGTGTTGAATTGGGGTAACAAATTTGGAAGGTGCAATGAAAATGAGGACTCAATAATAGAAAGACAGGTGTTGGAGGCTCTTCAACCAAATGGGAACTTGAAAAAGCTTTCTGTTTTACGTTATGATGGAACCAGCTTTCCAAGATGGTTTGGGGGATCTCATTTGCCCAATTTAGTGTCCATTGCACTGACTGAAAGCAAATTCTGCTTTGTGTTACCACCATTTGGGCAGCTTCCCTCTCTGAAGGAGCTTTCCATATCATGCTTTTATGGAATAGAGGTCATTGGTCCTGAGTTCTGTGGTAATGATTCCTCAAATATTCCTTTCAGATCTCTTGAAATATTGAAATTTGAGGAAATGAATGCATGGAAAGAATGGTGCAGTTTTGAAGATCACAATGAAGAAGGCCAAGGTTTGTCTTGTCTTAAAGAGCTATCTGTGAGGCGTTGTCCATGGTTGAGAAGGGCCCTTCCTCAACACCTTCCTTCTCTGCAGAAATTGGAAATTTGTGAATGCCCACACTTGGAGGATTCAGTTCCCAAGGCTGTAAGTATTCATGAGATGAAGTTGCGTTTGTGTGAAAAACTTTTCCTGAAAGATTTTCCATCCAGCTTGAAAAAGGCCACAATTCATGGAACTTGCATCATTGAGGCATGCCTCCACCAAATTCTTGTCAACAATCCCTTCCTTGAAGAGCTGAAAATCCACAACTTTCATGGTCTAAATAAAAAATGGTCCTCTTTGGATTTGCACAGACATGATTCTCTTGTCACTCTCTCTATAACAAGCTGGTACTCTTCCTCTTTGCCCTTTGCACTACACTTGTTTTCCAATCTTCATTCTCTACTTTTTCATGATTGTCCTTATCTTGAGTCATTTCCCGAGGGGGGTTTGCCTTCAAGCCTACGCAAACTCGAAATTGAGGATTGTCCCAAGCTGGTTGCTTCTAGGGAGAAGTGGGGATTGTTCAAACTCCATTCTCTCACAGAGTTAAGAGTTAGTGATGACTTTGAAAATGTGAAGTCTTTCCCAGAGGATGGATTGCTACCACCTACTCTCAGTGTGCTCTACTTAATTGCTTGTTCGAAGCTAACACACACAAACTATAAGGGTTTGCTCCATCTGAAATCTCTCAACTCCTTCTATATTTTATGTTGCCCTCTTCTTCAATCTTTGCCAGAAGCAGCTTTATCCAACTCTCTTTCTGTTCTCTACATTCATGATTGCCCTTTACTGAAGCAGCGTTACCAAAGGGATGGAGAGCATTGGCGTAAAATTCACAACATCCCTTCTGTGATTATATCATAG

Promoter Sequence:
>Vu_11380::LG3:337741-339741(-)

GAACCTATTAAACCTTTTTTTTAATATAAAAGTTTATTTTTTATAATAATTTTATGTGTTTAATAAATATAAATATAATTGTGTTGTCGGGAGTTTTACTTTTACGAGATCAAGTCAATTTAGAATATATAGATGAATGTAAATCTCATCTAGTCAGTTTTATAGGATTGAGTTAAACTTAAAAGTTCACTTCTTAATTTGTATATCAAAGTTATAATTAGAGTCTATCTTAACGATATTTGTTGTTTGTTAGATATATTATTTGACATGTTATCGAATCGTCTATTAACGTCCAGTCTCGATTATGATTTCTTTGAAAAAGGTGGTTTAAATATTGAATGTGTTTTATGTTGTGCAGAAAACGAAGGAGCAATGGTGGAGGGAACAAGGGTTGAGAAAAAGTTGTGGGAGATTTGCATAGAAAAACTATACTGGAAATGTGAAGACAATGACAAGTGTTTCACTGTTTGTCGCGAGAAATATGGTTACTTAGCAAGTGGTGTATGTAATTACGAAGAAGAATGTGTCTGTCGTCACCCTTGTTAAGTCTTTCATCTTCTTTCGATTACACATTCAATTTTCATCTTCTCTTCCAATTAGCGTTGGATTGGATCCTTCATAATGAAATTAATCTTTTTATATTATATTTATGCTTTCTAATTCTTTCAATTTTATTTTTAATTTCTCTCCATTATACAAAATTTAGATTTTAATTTAATGTTTACTTGTTTCATTGGGTCTTGTTGTTTTTAAAATCTTTTTGGAACTTTTACTCCGATTCAAAGAAATGGTAAAAGGGTAGGTATGATATTCGTTAAAGTAAAAAATTATTACACATTTTGTTTTTTATTTCAAATATTAAAATTAAATTATATTTATATAAATATAAATATTAAATAAAAATGAATGAATTTAAAATAATTATAAAAAAAATAAAGATATTGAATACTTATAAATGATTAAGAAAATTATGACAATAAAAAATAATATAAAACTTATCGGATTATCTAAAATTTAAAGTATTTTAATAATTTAAGACGGAAATAAGATTGAGCTAGAAACAAGAAACAATATGAGAACCTGAGTTTATATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATACCTGAATATAATTTAAAAAAAATTGAATAACAAGATTATGTTTTATCTAATTGTTTTTATATATCCAATGCAAAAAAAATGTATATTTTTATTACCATGGCCAAGAGTTTTTGGATTTTGTTTTTTATATCACGTTAGCATATTCTGAGGTTTTATAAGACTTCATGATCCAATATATGTGATTCCTCTTAGAAATATTCTCATCCAATGTTTAATTTTAAGTATAAGTATCTTAAGTCATAATTCAATTTAAATTAAACAGTAAAATATGTTTACAATATCTAAATTTGGATGCGAAAATTGAGTTTGTCTCTATTTTATCATTAAACTTTTCTCAGGTGTAACATTTTTGCTAAAACATTTCTTTGTTTTCCTTGAATCTGAAGTTTTAAAATAGTGTTTATGCAGTTTATCTTTTACATAAAACATTCATTTATGAGACAAAATTTAAAAAAAAAAAAAAAGTATTGTCATTTTTGAAAATCTAAAATAAAAATTGTACTAAAAAGTTACCATCTTATTCTTATTAAATCATTTTACATAGTAACGAATTAAATTTTTAACAAAAGTAATAACCTGTCGTGATTTGAAAGGCAGGTGTAAATTTAGATTATTAAACAATTGTAGTAAAAAGAAAACATTTGAAATTGAAGCTGAAAATTCAAAGGTTCAAAGAACGTTGAAAATTCAGCAGTTAAGGTAAGGTTTCCTTGTGTAACTTTTTTGTTGTTTGAATTGTATGATTTTGATTGTGAGTTTGTGCTTATGTTATTAAGGGTTGTGTTTAGTTCGTACAGAAGGTGTTGATGGGGTGAAGGTGGTGATTGTGAAGTGACTCGATCAAAGGACTC

Gene Sequence:

>Vu_11380(-)