Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11363 LG3 131380 132654 PREDICTED: scarecrow-like protein 3
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 131532 synonymous_variant p.Ala51Ala
C/T 132060 synonymous_variant p.Ser227Ser
C/G 132544 missense_variant p.Arg389Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11363.1
MNGEDRDEYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYVSEGLAFQVLKNLQGVPKAVNLSKTTSTSEEQLVKKTFYDLYPFLKTAYVITSHAIAEAVEGEEVIHVIDLCASDAAQWIYLMHRLKESLKSPSLLKITGIHEKKEILEQVDTQLRAEAKSLNFKLEFNAIVSTLENVDLEELPVQKGEPLAISSVLQLHTLLATDDAVVCNRSSKEEPMHQRTFAEMLGKQKTNLSSESSLLQLSLCATSTKMMDFLKGLWKLQPRVMVVTEQESSGNGSLTERVDKALDFYGALFNCLESTVSTTLVQRNIMERTLLGQEIKNIVAGEGVERKERHEKLETWIPKLEMAGFGKRHISHHGITQARKQLLGYGNRYRLCPDNNSLFVCWNDKPLFSVSAWTVQKMNNMVM*


CDS Sequence:
>Vu_11363.1
ATGAATGGGGAAGATAGGGATGAATACCTGGCCCGTATTCTTAACGCATGTGCAAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCATATTGCCTCCCCTTATGGTGATGCAATGCAAAGGGTAGCCACCTATGTTAGTGAAGGTCTAGCCTTCCAAGTTCTGAAAAACTTGCAGGGAGTACCTAAAGCTGTCAATCTGTCAAAGACAACGTCAACCTCGGAAGAACAACTTGTTAAGAAGACATTCTATGACCTGTATCCATTTTTAAAGACTGCATACGTAATCACAAGTCATGCCATTGCTGAAGCTGTTGAAGGAGAAGAAGTGATCCATGTCATTGATCTCTGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCATAGATTAAAAGAAAGCCTGAAGAGCCCCTCACTTCTGAAAATCACAGGCATACATGAGAAGAAGGAAATTCTAGAGCAAGTGGACACTCAACTAAGAGCAGAAGCTAAAAGTTTGAACTTCAAACTCGAATTCAATGCTATTGTAAGCACTTTGGAGAATGTTGACCTTGAAGAATTGCCTGTGCAGAAAGGAGAGCCTCTTGCAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAGTGGTCTGCAACAGGAGCTCGAAGGAAGAACCAATGCATCAAAGGACATTTGCTGAGATGCTTGGGAAACAAAAGACCAACCTCAGTTCTGAATCATCGTTGTTACAACTTTCTCTGTGTGCTACTTCAACCAAGATGATGGACTTTCTAAAGGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGGTTACTGAACAAGAATCCAGTGGCAATGGTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTACGGTGCATTGTTCAACTGTTTGGAATCAACTGTTTCAACAACACTAGTACAGAGAAACATCATGGAAAGGACTCTACTGGGGCAAGAAATAAAGAACATTGTTGCAGGTGAAGGAGTTGAGAGAAAGGAAAGGCATGAGAAACTTGAGACTTGGATCCCAAAGCTAGAAATGGCTGGGTTTGGGAAGAGACATATTAGCCATCATGGGATCACGCAAGCAAGAAAACAGTTGCTCGGTTATGGAAATCGATACAGGCTTTGTCCCGACAATAATTCTTTGTTTGTCTGCTGGAATGATAAACCTCTCTTTTCTGTGTCAGCCTGGACAGTTCAGAAGATGAATAACATGGTTATGTAA


Promoter Sequence:
>Vu_11363::LG3:129380-131380(+)
TTTGCTCAAGAAATATTTGTGTATGTATGTTACCTCAATGTCTTTGGCTGTGCCATGAAGCATTGGATAGGATAAGACAGATTGGCAAAAAGAACTCTTGTACCTTAGCTGAAATAAACATGTTTTTTATTCATTTTTGTTTATTTGGACCATTTCCATTAAGGTTATAGGGCCAGCTAGACAATACGGATTAGTAATTAGTGTTTGAATCCTTTGGTTTAAATGTAAAGCTACTTTTTGACATTAGATGGCATGAATGCATCTTTTTAGAGGCGCCTTGTATCGGAACAAGCCCTCCAATTGAGGGCTAAGGGAGTTTTCACTCTCACAGACAGTGTCAATGTTCAAATATCAAGTCCATTGAGACAATGTTCAGACATCAAGTCCACAAACAATACTAATGTTTAGAGGTCAAGACAAAAGACAATTTAAATACACCTTGCTCCTGCAATCTTCGAAGACGACTTTTAGGTTGACAATACTTCACATACGATAGATATTTTACAAGGCAAGACATCTTACTTATCAACATCTCTTATGACTGTCAAATGCTTCAAAAATATCAATATAGTGCAATTCATAGAACCTCACTTTTTGTTCCTATTCCATGTTTTGACCCTACTTGGTACCTAGATTTAACCAATTCACATATCCATAATCTCTTGCAATACTCATCATCTTCAGCATTGCTTTTAAAAGACTCTAACTTTTATGAGGTTACATTGCATATATTTTAGTAGATTTCCATGTCCACATAGGAAAATTACAAGATATTAAGCCTTGCTTTCTCCTTCCGTATATAGCATTGTTTAGACCTATAGTTGATGACTTTAGTTTTACATAAGAAGGTCGTGTATCTCAAAACACAAGGCAACTTTGTTTAAATGCTTCTCCCTTGTGGTATATTATACAAAACCTATGTTTATCCTAAAGATAAAATTTATACTTTTGACAAATGGTGCTAGAACATTTTTACACAAATCAGCATATATTTCATCTATGTTTGGTTTCATAGGAGTTGTCTCATTCTCGCTCCATAAACTAGGTAGTAATAATGACACCATGTTTGTCTCCTTTGAAAACAAACTTCTTCAGACAATGTCCTTATCTATGACTAGATAACCTTTTATATGCAGTCGAACAATAGTGGTTGGAGGCTTTAATGACTAACGCGGCAAAATTAACTTTCACACTCATCAAGACAAAGATGCAAGGAACCGTTTAGACATTGTTGGATTGTACTTGAATTGGACTTAGACACCCGATTTGTCCAACTAAATTCTCATCTTATTAGGTGAAATCAATGGTGACATGACCAACTCTTTTCATTGTTCCTAACTTGATGCAGATGTCGTTCATGACAAGAAATTTAACTTCTACTGGTTTACTTACCCCACAAAACCCAATACCATATTCTCTATGAAGCTTTACTTGCACTTATAGGGACTTTGGATGCTCTTGGGATCTTCATCTGTGTTACTCAATAGGATTGGCAATGTAGTGAGAACTAGAGAAGTTGCTTGGTGGTATACATTGTCTTTTGGGTGTCCAACGACAAACATATGGACACAGGTAATATACTCTCTCTACAGAATAGAACATTTTACATATCCCCCATGTAACCTTGTTTTTCTACGAATTTACAACATTTTAGATAGTAATAATGTGTTACATAAAGTGCTAGAACAATTTGTCATTTGACCTTGTATCTTGTTCTTCTCACCAAGGATGAACTATCTCAAAAGCTTAAGGTTGTGAATCATAAAATTTATGTGCATGTTGTCATGAGAAGAGTTTATTGCGAGATAATTGATGGAAAATGATGAATCATTGATACAACTGATTATTTCTCTTGCAGCAGTATTTCTGTACGAATTAAACTAACTTGCAATACTAGTGAATTTGCAACACTCTTATTGTATTTAGAGTGCTCTTTCCAGTTGTCCTGATAAAGCTATCTCTTAATATATTAGATTCACCATACCCTTGGCTCAAAGATA


Gene Sequence:
>Vu_11363(+)
ATGAATGGGGAAGATAGGGATGAATACCTGGCCCGTATTCTTAACGCATGTGCAAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCATATTGCCTCCCCTTATGGTGATGCAATGCAAAGGGTAGCCACCTATGTTAGTGAAGGTCTAGCCTTCCAAGTTCTGAAAAACTTGCAGGGAGTACCTAAAGCTGTCAATCTGTCAAAGACAACGTCAACCTCGGAAGAACAACTTGTTAAGAAGACATTCTATGACCTGTATCCATTTTTAAAGACTGCATACGTAATCACAAGTCATGCCATTGCTGAAGCTGTTGAAGGAGAAGAAGTGATCCATGTCATTGATCTCTGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCATAGATTAAAAGAAAGCCTGAAGAGCCCCTCACTTCTGAAAATCACAGGCATACATGAGAAGAAGGAAATTCTAGAGCAAGTGGACACTCAACTAAGAGCAGAAGCTAAAAGTTTGAACTTCAAACTCGAATTCAATGCTATTGTAAGCACTTTGGAGAATGTTGACCTTGAAGAATTGCCTGTGCAGAAAGGAGAGCCTCTTGCAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAGTGGTCTGCAACAGGAGCTCGAAGGAAGAACCAATGCATCAAAGGACATTTGCTGAGATGCTTGGGAAACAAAAGACCAACCTCAGTTCTGAATCATCGTTGTTACAACTTTCTCTGTGTGCTACTTCAACCAAGATGATGGACTTTCTAAAGGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGGTTACTGAACAAGAATCCAGTGGCAATGGTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTACGGTGCATTGTTCAACTGTTTGGAATCAACTGTTTCAACAACACTAGTACAGAGAAACATCATGGAAAGGACTCTACTGGGGCAAGAAATAAAGAACATTGTTGCAGGTGAAGGAGTTGAGAGAAAGGAAAGGCATGAGAAACTTGAGACTTGGATCCCAAAGCTAGAAATGGCTGGGTTTGGGAAGAGACATATTAGCCATCATGGGATCACGCAAGCAAGAAAACAGTTGCTCGGTTATGGAAATCGATACAGGCTTTGTCCCGACAATAATTCTTTGTTTGTCTGCTGGAATGATAAACCTCTCTTTTCTGTGTCAGCCTGGACAGTTCAGAAGATGAATAACATGGTTATGTAA