Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11362 LG3 126885 128926 scarecrow-like protein 3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to gibberellin, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to gibberellin, response to gibberellin, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to gibberellin, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to gibberellin, response to gibberellin
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
A/C 127079 upstream_gene_variant
G/T 127083 upstream_gene_variant
A/G 127702 missense_variant p.Arg35Gly
T/A 127904 missense_variant p.Leu102His
A/T 127994 missense_variant p.His132Leu
T/G 127998 missense_variant p.His133Gln
T/A 128206 stop_lost p.Ter203Argext*?
G/A 128516 missense_variant p.Gly306Asp
T/C 128860 synonymous_variant p.Leu421Leu
T/C 128861 missense_variant p.Leu421Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11362.1
MDSGSPCQWLRELRLESQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSEALGHRIIKHLPGVYKSISPSKTSLSSDDILAEKYFYELCPFLKFSYLITNQAIVEAMECEMVVHIIDLHCCEPAQWIDLLLTFKNRRGGPPHLKITGINESKEVLDQVNFHVTSEAGKYDFPLQFYPVVSKLEDVDFEKLSVKTGDAVAITSVLQLHLLLSTDDDMAGRISPAVAASMNLQRTVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGNLLKAMRKLNPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERTLFGEQIKNIIACEGVERKERHEKLEKWIRRLEMAGFVKVPLSYNGRIEAKNLLQRYSNKYKFREENDCLFVCWSDRPLFSVSAWSFRR*


CDS Sequence:
>Vu_11362.1
ATGGACTCAGGTTCACCATGCCAGTGGTTGAGGGAGTTGAGATTGGAGTCTCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCAGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGAATGGTGAGCTATTTCAGTGAAGCACTTGGACACAGGATAATAAAACATCTGCCAGGTGTATACAAATCTATCAGCCCCTCAAAAACATCACTATCTTCAGACGATATCCTTGCTGAGAAATACTTCTACGAGTTGTGTCCCTTTTTGAAGTTCTCATACCTGATCACAAACCAAGCCATTGTAGAGGCAATGGAATGTGAAATGGTGGTTCACATCATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTTCTACTCACTTTCAAAAACCGTCGGGGAGGTCCACCCCATCTGAAAATTACAGGCATTAATGAGTCGAAGGAAGTGTTGGATCAGGTGAACTTTCATGTGACATCTGAAGCTGGGAAATATGATTTTCCTTTACAGTTCTACCCAGTTGTTAGCAAACTGGAAGATGTTGACTTTGAGAAGTTGTCTGTTAAGACTGGAGATGCTGTTGCAATAACTTCTGTTCTTCAACTGCATTTGCTTCTTTCCACTGACGATGACATGGCTGGAAGAATCTCACCAGCAGTGGCAGCCTCCATGAATCTGCAGAGAACAGTGCATATGGGCCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTTGGTGCCTCGCCTAAGATGGGGAATCTTCTGAAGGCCATGCGAAAGCTCAATCCAAAACTGGTGGTGGTCACTGAACAGGAATCAAATCTGAATGGATCAAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCTTGGACTCTACTGTAATGAGAACATCAGTTGAGAGACAAAAACTTGAGAGGACTCTTTTTGGAGAGCAGATAAAAAATATCATTGCTTGTGAGGGAGTTGAGAGAAAGGAAAGACATGAGAAACTTGAAAAATGGATTCGAAGGCTTGAAATGGCTGGTTTTGTGAAAGTGCCATTGAGCTACAATGGGAGGATTGAAGCAAAGAATCTGTTGCAGAGATATAGTAATAAATACAAATTTAGAGAAGAGAATGATTGTTTGTTTGTCTGCTGGAGCGATAGACCATTGTTTTCTGTATCTGCTTGGAGTTTTAGGAGATGA


Promoter Sequence:
>Vu_11362::LG3:124885-126885(+)
TCAATATTTTTGAAAAAATTTCTTTTGAAGAGGCTAAGTGGAAGCTAGGAAAAAGTCTTATCCTAAAAGTCCCGTCTTAATGAATTAGGATTAAAGTGGGTTGTTCCTACTACAAAATTTTAATTAATTTTTATAAATAATATCATTTATGTATACATATAAAATATATATTTTATTAGAGAACTAATATATTATATTTTTTAATATTTTTATTATCACTTTTTTCATTTGTTTGATTTATCTGCATGTGTGCTCTATTTTTTTGATTTCTTGATGATTTTGAATTTCTAAACTTTTTTATCACTTGATTTATTGGTTGTTTCTTCCAACTAGAATTTCTACATCTTGTTAAAATTTGTTACATTTTCTATTATTGTGAATAAGGGATTTCTTAACTTTTTTTTATTCATTGTTATTGTCTCTTTCCAACTTTTGATTTTTTTTTCTCCATTCCTTTTTCTTATCTTATATTTAATTTTTTAATATTTTATTAATAAGTTATATATATTTTATTTTCCTCTAATACAAATTTTTCCTTCCTTATGTACTCTATTGTTCTTAATTCAATTACATATTTGTTTTCATTTACTTACAAAAAATTATTAAAAATAAAAAAAAAATACATCAATTCAAATATTAATATTACTATAAAATCCATACCCATTTAAGTAATTATACATATTAAAACACTTTTCATTAATATTACCTAAACAACTATTTGAACAAAAAGTATTTTTAAAATAAAAATATTCAAACATAAATCAAGTTATACTCAACTTACCTTTTACTATATTTAAGTTGAAAAAGTTAATTTCAACCAAAATTAACCTTTTCAACTTAAATCCAAATAGAGACTTTAGAGTAGAGGAAAAGAAGGGAGAAGCAGAAGAAAAAGAAGAATGAATTGAAAATATAAATTTCTTCCGCTCACCGGTCAATTCGTTTTTTAGGAAATAAAAAAGTAAACTGATCCACTAGTTAATATTAGAAATGAAATAAGTAAGTTGATCCATGAATTGAAAATATAAATTTTAGACCTGCCAATTTTATCCAATATCAATTTTACATATATTTTATTTAGATCAGACGAAACCTTAGACCTGATTTTTTTATTTAAGGTATCATAAATAAATGTAAATTTGAGATCTAAAGTAAAGTTACAAATTAGTTAAAATTTTGAAATTATAATCATAAAAATAGAACATTAAAATTAAAATGAATATTTCTGCGGAAGCAGGAAATCATTTACAGAATCTGTTGGTTTTTATCTAATTTCTGGTTTTATCTGTTGTGGCAATTAAAAACCTGTTAAATACATGAACATGATTAGCAAAGTTGAACACTTATATTAGACTAACAAACAAAAACATATAAGATAAATCCAGCTTATGTTTTGATGAAACAAAACACATCAAACAATAAACAATTCAACTGAGAGAAAATTTGAGTAGATTTTCACCTCAAACTCAGGTATTGACTTGTTTGTTCTGTCCTATGTCCAAGGAGAAGTCACCAAGTGGAGGTTTTAGCTTTCAACACATAAATCCAATTTTTGTTTTGGAGGATCTTCCTAAGGTTTTCCTTGCTATCCTCATCATCTACCACTATGGAACAACTATGGCCTGTTTGGACATGTTTGTATTTGACAAGGATGCCTGTTTTGGCCAGCACTAAAATGTTGTACTTTACAAAGAGACAAATCTAGGTAGATAGCACCCGGCAATTCAGAAACTGCATATTCCTTGCTGCACCAGAAGAATGACAAATGAGAGGTGACATTAACAACCCCTTTTCCTGTCCATTCTCCATTCTTGAGAAACTCTTCAAGACAATACTGACTTATAAAACACTTCAGAGCTTTGCAACTTGCCGGGAAACAGTTTTTGATTTTTGGTTTTGTTGCTCTTAGAGGCTATATTTTGGCCTCACCGAAAACACCAACTGTTGTTAATTTGAAGTTGGTGGTGTGACTATTGATTTTCTGTCCAGGTTTCACCTTA


Gene Sequence:
>Vu_11362(+)
ATGGACTCAGGTAATGATTTCTTTGTTTGTTTTCATGGCTAAAGAAAATGCTGCATTCAGAACAGAAAACAATAGAAAGAACGTTTAAACTGTTCATATGCTTCACTTGGTTCTCCTAATGATGTGATAGTTAAATAGTGGTTTGATAGTTTTAAGCATTTCAGAAGCATAACACTGTAAGAAGTGTAAAACTGAAGTGAAATTCTGAACTAAGAAATAAATATGTAACCAGTCTGTGTGGAATTAGGTGCATGATAAGTTGATCAATTACTCAATATAAGATAGATATCTAGGTATTATCATTACTGTTTACTTTTCCATATGAAAAATATACTTTTCTCTTCAACTAACTTCTCTTTTACAGTCTGAGTTTGATGAAAGAGCAGAAATAATTACCCCATGAAGTTGATGACCTGTTTATAGTAAGAATTTTGACTGTTCGTTTGCACTTTTTCTAATGAACAGTTTTCTTTAAACAAAAAGCATATACCACCCCCTTAACCTGCTGGATGGATAAGCTACTTGGGTCACACCAGCCCTTTAACTTGGTCGAAAAAAAAAACCAAAGCTTTTTGAAAACAAGAAACATAGAATCACTATTATACTATTGTATCTGGACACTGATGCTTGTTTCTCACATTTACATGCTGAGAGGAATGAACATCTTATATATTCTTTTTGGGGTCTTACTTATGCTAATTCCAACTATTATGGATTGAACAGGTTCACCATGCCAGTGGTTGAGGGAGTTGAGATTGGAGTCTCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCAGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGAATGGTGAGCTATTTCAGTGAAGCACTTGGACACAGGATAATAAAACATCTGCCAGGTGTATACAAATCTATCAGCCCCTCAAAAACATCACTATCTTCAGACGATATCCTTGCTGAGAAATACTTCTACGAGTTGTGTCCCTTTTTGAAGTTCTCATACCTGATCACAAACCAAGCCATTGTAGAGGCAATGGAATGTGAAATGGTGGTTCACATCATTGATCTCCATTGTTGTGAGCCAGCTCAATGGATAGATCTTCTACTCACTTTCAAAAACCGTCGGGGAGGTCCACCCCATCTGAAAATTACAGGCATTAATGAGTCGAAGGAAGTGTTGGATCAGGTGAACTTTCATGTGACATCTGAAGCTGGGAAATATGATTTTCCTTTACAGTTCTACCCAGTTGTTAGCAAACTGGAAGATGTTGACTTTGAGAAGTTGTCTGTTAAGACTGGAGATGCTGTTGCAATAACTTCTGTTCTTCAACTGCATTTGCTTCTTTCCACTGACGATGACATGGCTGGAAGAATCTCACCAGCAGTGGCAGCCTCCATGAATCTGCAGAGAACAGTGCATATGGGCCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTTGGTGCCTCGCCTAAGATGGGGAATCTTCTGAAGGCCATGCGAAAGCTCAATCCAAAACTGGTGGTGGTCACTGAACAGGAATCAAATCTGAATGGATCAAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCTTGGACTCTACTGTAATGAGAACATCAGTTGAGAGACAAAAACTTGAGAGGACTCTTTTTGGAGAGCAGATAAAAAATATCATTGCTTGTGAGGGAGTTGAGAGAAAGGAAAGACATGAGAAACTTGAAAAATGGATTCGAAGGCTTGAAATGGCTGGTTTTGTGAAAGTGCCATTGAGCTACAATGGGAGGATTGAAGCAAAGAATCTGTTGCAGAGATATAGTAATAAATACAAATTTAGAGAAGAGAATGATTGTTTGTTTGTCTGCTGGAGCGATAGACCATTGTTTTCTGTATCTGCTTGGAGTTTTAGGAGATGA