Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11224 LG2 52238310 52239037 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, mitochondrion, mitochondrion, mitochondrion, mitochondrion
Molecular Function   enables   DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/G 52238433 stop_lost p.Ter175Glnext*?
G/C 52238456 missense_variant p.Ala167Gly
G/A 52238535 stop_gained p.Arg141*
A/G 52238586 missense_variant p.Cys124Arg
C/G 52238730 intron_variant
T/C 52238834 synonymous_variant p.Ser68Ser
A/G 52238949 missense_variant p.Leu30Ser
G/A 52238968 stop_gained p.Gln24*
C/T 52238982 missense_variant p.Arg19Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11224.1
MQRGTEGEEEAVSRGSKCRDCGNQAKKECLYSRCRTCCKNKGFNCQTHIKSTWTPVDRRRTKDNNPSSSPHNFHPDFPQNHNQINPYSGLEMKFPCATSSMAMFRCVQVRSVDDAVNEIAYQTSVNIGGHVFSGILYDQGPEQSYNINKGESSTALVDEHQNNSLGLLKNSSSRDSSGVTIASAGHGDPLFPPPPYPFPLASFRPGMPYFTYPRS*


CDS Sequence:
>Vu_11224.1
ATGCAAAGAGGAACAGAAGGAGAAGAAGAAGCAGTGTCAAGGGGTTCTAAGTGCCGAGACTGTGGGAATCAAGCCAAGAAGGAATGTTTGTATTCAAGATGCAGAACTTGTTGCAAGAACAAAGGCTTTAATTGCCAAACCCATATCAAGAGTACATGGACTCCTGTTGATAGAAGGCGCACCAAGGATAATAACCCATCTTCATCTCCACACAACTTTCACCCAGATTTTCCTCAAAACCACAACCAGATCAATCCATATTCAGGTTTAGAGATGAAATTTCCTTGTGCTACGAGTTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGGTCGGTGGATGATGCGGTTAACGAAATAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTCAGTGGAATACTATATGATCAAGGCCCCGAACAAAGCTATAACATTAACAAGGGTGAGAGTTCCACTGCTCTTGTTGATGAACACCAGAATAATAGTCTTGGTCTGCTGAAGAATTCTTCGAGTAGAGATAGCAGTGGTGTAACTATAGCCTCTGCCGGTCACGGTGACCCTCTTTTTCCTCCACCACCGTATCCCTTTCCACTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATACCCAAGATCTTGA


Promoter Sequence:
>Vu_11224::LG2:52239037-52241037(-)
TTGTAAATTTTTTTTATGGGTTTACCTTTTTCATAACATTAAATTTAAGTAAAAAAAAAATTATGAAAAAGGCTTAAATTCATGGTTAGATTATAACTAAAAATACCTTTTTAATGCATTCCATTTATTTTTACATATCTAGTTGATTGTTATTCTATTTTTTAAAAGCAGAAAGAAAATAATATATATCTTGCAATATTTTTAATAATTCCTTTTTTTTTTGTTATATTTTATCACAATTTTTCCCTTTTTTAATTTCTTGTTCTCCTGACACGATTATGAAATGCAACTTGTAGTCAAAAAGATGTTTCATCATTGGATCCTATGTTGCACAGAAAAGTAACATTTACATGCCTCATAAGATCAGAATAGCAGTTAAACTGTTTCTAACAAAAGGAAAACGCTAATTAATTATAATTAATTACCCTAATCCCGGTCCAAGACAGAGGATGTGAATTAGTAAACTTCACTGCTGTCTTTATTCTTCTTTTGTTATTCCCAAAAAACTTTAATTTCTTCGTTCGCACTGGTTTAAGATACCCCCACATGCTACAATTCTTCCAACCAAAACATCACATCTAAAGCTATCTTATCCTTAATTTATAGGCAAAGTAAACCATTACCACACACACTATACTTCTACCATAATACATAAAATCATCTATTCTACATACTAACATTTAATATATGGATTATCTATATATACATATCATATTATTAATACAATCATTTTTTATCAATTATTAAACTTTCTCTAAAAAAAATTACATCATCATAATAAGCTATTATTTTTTGTGGGAAAAAAAGTGAATATCTTCGTTCTAATAACCATAAATTATGTGTTATAAATATACATTCTATTATTTTTTATAAAAGAAAAATTCCGACTCTCTTTAGGGTTGAGATCAAGGCCCAAAGAGCGTCTAAGAGTAGCCCAGCGGCCCAAATCACATAACAGTTAGACATGGAATTTCACAAAATGAAATGCATACAATGGAATTTTTCTTTGGAAAATGTTATTTGGACAACAAAAATTTGACACAATTTTGACAACGGCGACGTGGCAGCTGTGCATTGGCTCAGTGAATTGAAAACAAACCAGAAAAAACCCAAAATACCCCTCACCCCGGTTCACTGAGCCAATGCACAGCTGCCACGTCGCCGTTGTCAAAATTGTGTCAAACTTTTGTTGTCAAAATAACATTTTCCTTTTTCTTTTAATATCAATCATCTGAAAATCAAGAAAAGAAAAAACCATGCATAGATGAGCTTAGCACCACCACCATGGAGGAAAGGCGCCGAGTATAAAAGAAAAACAAAATGATATTTTGACAATTTCTTTTTTAACAATTTTTTTAACAATAGATTATGTGTCATTATTTTATTGGTTGGTACATTTTAAACAGATTAATCACATCATAAAAAAATATTCGTTAAAAAAATTGTACTCATAAAAAAATGTTCGTTAAAAAAATTGTACTCCTTTTTATTTTATTACCAAATATATATATATACATATATATATATATATATATATATATATATATATTTTATATATTTCAAAAGACATGTTACTGATATTTGAAGACAAACACATAACAAAAAACACTTTTGACACGCTGACTTTATATATCTGTCTCAAACAGAACCAATAATTGGAAGTTTGAGAACATGGAAAGCAAAGACATGTAAACTGTTGAAGATTCACACTCACATTCAACCGATTCACTCTCTAAAGCCATTGCTTATACTGCATTTTGTCTCCAACCCTTCAATTTGCCTTTCCCTTATTCTAACACATCACTTTTTCTTTCTGGTATGTTTGCCTAGTGCTTCCGTGACGTGGATTTTACTTCAACCCAGAATCGATTCTCATGCCATGCCGTACCGCTATTTTAAAACTCGACCAAAGTGCACAGCATTATATAAATAATAATACTTTGGTTACAATAATTTTTGAACAAAGAGAAGAAGCTTATGCATTTTCGAGAAAAGAGAAG


Gene Sequence:
>Vu_11224(-)
ATGCAAAGAGGAACAGAAGGAGAAGAAGAAGCAGTGTCAAGGGGTTCTAAGTGCCGAGACTGTGGGAATCAAGCCAAGAAGGAATGTTTGTATTCAAGATGCAGAACTTGTTGCAAGAACAAAGGCTTTAATTGCCAAACCCATATCAAGAGTACATGGACTCCTGTTGATAGAAGGCGCACCAAGGATAATAACCCATCTTCATCTCCACACAACTTTCACCCAGATTTTCCTCAAAACCACAACCAGATCAATCCATATTCAGGTTACTGTCATCGATCTTTTCTTTTTTTCTGGGGTTGACACAGTTCTAAAACTCATGCATGATGTATGTTTTAGTTTCAGGTTTAGAGATGAAATTTCCTTGTGCTACGAGTTCGATGGCTATGTTTCGGTGCGTTCAGGTTCGGTCGGTGGATGATGCGGTTAACGAAATAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTCAGTGGAATACTATATGATCAAGGCCCCGAACAAAGCTATAACATTAACAAGGGTGAGAGTTCCACTGCTCTTGTTGATGAACACCAGAATAATAGTCTTGGTCTGCTGAAGAATTCTTCGAGTAGAGATAGCAGTGGTGTAACTATAGCCTCTGCCGGTCACGGTGACCCTCTTTTTCCTCCACCACCGTATCCCTTTCCACTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATACCCAAGATCTTGA