Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_11199	LG2	52050229	52050700	PREDICTED: protein RADIALIS-like 6	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	52050232	missense_variant&splice_region_variant	p.Leu91Met
G/C	52050252	downstream_gene_variant
A/T	52050358	downstream_gene_variant
G/A	52050374	downstream_gene_variant
T/C	52050387	downstream_gene_variant
T/C	52050388	downstream_gene_variant
A/G	52050446	synonymous_variant	p.Ser85Ser
A/T	52050448	missense_variant	p.Ser85Thr
T/A	52050543	missense_variant	p.Asp53Val
T/G	52050566	synonymous_variant	p.Ala45Ala
T/C	52050602	synonymous_variant	p.Lys33Lys
A/T	52050631	missense_variant	p.Phe24Ile
A/T	52050694	missense_variant	p.Ser3Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_11199.1

MASTTFSKQKPSDSFWTPKQNKVFEKALAEYDKDTPERWHNVAKAVGGKTVEDVKRHYQILLDDLRHIESGHVPLPNYKSTPSSSFTNSRF*

CDS Sequence:
>Vu_11199.1

Promoter Sequence:
>Vu_11199::LG2:52050700-52052700(-)

TGTATGCCACTCCCGTAGGTGGAAATACATCGGATATTGTCGTCAATGTCCATTTTCAATATATGAGTGAGTTGATTTATAGAAGACATTTCATTTAGCTTCTTTACATAATTAATTCTAACTTATCCATAAATTAATTTAATTTATGTTTTTCTTTTTTAAATTTGTAACTAATATTTAAAAAAAAAATCTTCTGCAAGAAGAAATTTAGACTCAATATCTTTTATTTCAATGGATCTGATCTATCTAATTGTAAGAATTATATAAAAACAAACACATTAATTGCGGCTGTTTTATTTTAACAACTATCTGCAGGAAATTGAAGTAATGGCATAAGAAGTAACTAACCTTTATATTTCATCTTAAGAAAAGTAAAGTGAAGTCGCAGTGAATGCTTGCTAAAAGAAGAAATGCGACAGCTAGTTATTAAATCTTAAATCTTTCTCTACAATTAATAATTAAGGTTTTAATTTTCTCTCTAATTATTTTAGCGATTGATTCTTTGTACTCAGAGATCATTAACTCAATTTCTAGAAGAGGATTTTTTTAGTAATTTGACAACAAAAAGATCGCAGTTGTCGTGATGGTTTAAATTTACACGCTTTAAATTTAAAAGACCAAGATTACAAAATTATAATATCCGACACTCCAATATTTAAAGTTGGGCCAAAATCTTAAACTGTAAAAGGTGTTTATTTAATAAATTTTGATATAAAATATAAAGTTTTCTTCCTGCACCCCCATGTTTTCTTTCTGTACCCCAACTTTTGCTATAGTTCCCATTTTATCTCTATAAAATATATATTAAATAAGTTAAGGACTCCATTAGATTATAAAATTCGGTTAATGAAAATTTATATAATTAAATTTTAAATTTTGATAAAATAAAATCACATTTAATTAGATTTCGGAATCTAGTTAAAATACAATGAAACTTAACCAGATTTTAAAATTAAATAAACAACAAAAATCATAAGTAACTAAATTTTAAAATTTGATGAAAAAAAATTGACACTTAACTGAATTTCAAAAAGCAATAAATAAAAAATTCACACATAACTTAATTCTGAAATCCAATAAAAAAAATCCACACATAATAAAATAAAATTCACGTAAGCAAGTTTCGAAATCCATATAAGTTTCTTGGGTTTGGATTTGTAAAACCGGATTTTGTAAACCAGATTCTTCTTCATTTTTTTCATGTGGCATGTTTCCTTTATTTCCTTCACCACACACATCCACCCTTACATTCGTGTTGGCCATTATTCAACTTCACTCATCACAACAGGACCATTGTTTATTATTGTTGTAGGTTTTATATCGACTAGAGATAAGATCAATTCATAATTTATAACTAGATATAAACTTTATTTTACAAACCGATTTTGTGAAGATCGAATTAAACTTAAAGTCACTTCTAATAATCATTCCCGTCTTCATTTCTTGGTTTAATTGGCGTTATGAAATGAAAAAGTGTGTGGGCTGAATGTATGAATGGCAATATCATATTAATATGTGTAATGTTTTAAGCAAAAAGGAGAGACTATGAACATGGGAAAAAGAGAAGGCTGATGGTAGTCCATGTTCATAAAAAAACAAAACTGTAAATAAACATTTGGAACCATGTCTCAAAATATCTCATTCTTAACACCTCGGTGAAGTGGGTTACAGAACGAGTACTTGGTAAGAAAAATAAGTTTTTATCCGTTTATAGAAGATAACGATGAAGAAGAGGAAGTTTATTATGAGAAAGATAAAAAAGACGAAGATGACAAAAGATATGAAATCCAGAACCAGATTCATCAGAAACCGATTCCCATGATTTGGTCGTACCATGTTGTTCTTCATTCAGTGGTTCTAAAGCAGAAACTTTTGGCAACTGAGATTCGGCCGTGAGTGACCTACAACAACCCACTAATCTTCAACCTCAAGCCATTTTATTTATACGCAGGACCACACCACTTTTATGCTCAACCTTCTTTCTTCCTTCTCCATTTCTT

Gene Sequence:

>Vu_11199(-)

ATGGCCTCAACCACTTTCTCCAAACAAAAGCCTTCTGATTCCTTTTGGACCCCAAAACAGAACAAGGTCTTCGAAAAGGCACTTGCAGAGTATGACAAAGATACCCCTGAGCGCTGGCACAATGTAGCCAAAGCAGTCGGTGGTAAAACCGTTGAAGATGTTAAGAGACACTATCAGATACTCTTGGACGATCTCAGGCACATAGAGTCTGGCCATGTTCCACTTCCCAATTACAAATCCACACCATCTTCCTCTTTCACTAACTCACGTATAACATTTTCTTTTCATCTTTCATTTTCGCTTTTTTTATCCAAAAAAAATCATTCCGTATATACATCGATTTAGATAAAAAAAATGTCTAAATTAATAAATATGGAATGATTTCTGCCTACTTCTATAAAAAAAAACCTCCATTTTCTTATGTAATTACTTGTTCTTCATTTTGTTTCATTTGCTTGCTCCAGGCTTTTGA