Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11146 LG2 51683269 51684475 PREDICTED: WUSCHEL-related homeobox 8-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   fatty acid metabolic process, cell wall biogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, monocarboxylic acid metabolic process, wax biosynthetic process, wax biosynthetic process, cellular lipid metabolic process, peptidyl-amino acid modification, fatty acid metabolic process, cellular lipid metabolic process, secondary metabolite biosynthetic process, monocarboxylic acid metabolic process, organelle organization, fatty acid metabolic process, secondary metabolite biosynthetic process, phloem or xylem histogenesis, regulation of transcription, DNA-templated, secondary metabolic process, cellular lipid metabolic process, negative regulation of gene expression, tissue development
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 51683317 synonymous_variant p.Ser10Ser
C/G 51683443 synonymous_variant p.Thr52Thr
T/A 51683461 splice_donor_variant&intron_variant
A/G 51683568 upstream_gene_variant
T/C 51683571 upstream_gene_variant
T/C 51683583 upstream_gene_variant
A/G 51683602 upstream_gene_variant
G/C 51683626 upstream_gene_variant
G/T 51683674 upstream_gene_variant
C/T 51683676 upstream_gene_variant
G/A 51683710 upstream_gene_variant
G/A 51683724 splice_region_variant&intron_variant
G/A 51683729 splice_acceptor_variant&intron_variant
C/T 51683738 synonymous_variant p.Leu61Leu
C/T 51683908 synonymous_variant p.Gly117Gly
G/T 51683977 missense_variant p.Arg140Ser
G/A 51683993 missense_variant p.Ala146Thr
A/G 51684010 synonymous_variant p.Glu151Glu
A/G 51684025 synonymous_variant p.Thr156Thr
C/T 51684058 synonymous_variant p.Arg167Arg
G/C 51684062 missense_variant p.Glu169Gln
C/T 51684067 synonymous_variant p.Ser170Ser
G/A 51684109 synonymous_variant p.Arg184Arg
G/C 51684121 missense_variant p.Met188Ile
A/C 51684153 upstream_gene_variant
C/T 51684178 upstream_gene_variant
A/G 51684197 upstream_gene_variant
T/C 51684261 synonymous_variant p.Asp205Asp
G/A 51684351 3_prime_UTR_variant
T/A 51684355 3_prime_UTR_variant
A/G 51684422 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11146.1
MEAEHHQEASIAIGSLYVKVMTDEQMELLRQQISVYATICEQLVEMHKAITTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAPNVAEPETETEIDSPREKKIRAESVQVVQPFENSSPHRIKDMYIHSPDLGFEQLMSKIDVAGCYGSYFL*


CDS Sequence:
>Vu_11146.1
ATGGAGGCAGAGCATCATCAAGAGGCCTCGATCGCTATCGGAAGCCTCTACGTTAAAGTGATGACCGACGAACAAATGGAACTGCTAAGGCAACAGATATCTGTCTACGCCACCATCTGCGAACAGCTTGTTGAGATGCACAAAGCAATAACCACCCAACAGGACCTCGCAGGACTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGTTCTGGACACAAGATAACTGCGAGGCAGCGTTGGACTCCAACGCCTCTGCAACTTCAAATTCTGGAGCGAATTTTTGATGAGGGAAACGGCACTCCAAGCAAGCAGAAGATCAAGGATATAACGATTGAACTGGGCCAACATGGTCAAATATCAGAGACAAATGTGTATAACTGGTTCCAGAACAGAAGGGCTCGTTCAAAGAGGAAGCAACTCGCTCCCGCACCAAATGTTGCGGAACCAGAAACCGAGACAGAAATCGATTCTCCGAGAGAGAAAAAGATACGCGCCGAGAGCGTTCAGGTTGTTCAACCCTTTGAGAATTCATCACCTCATAGGATCAAGGACATGTACATCCACAGTCCTGACTTAGGATTTGAGCAATTGATGAGTAAAATAGATGTTGCAGGCTGTTACGGCTCTTATTTTCTTTGA


Promoter Sequence:
>Vu_11146::LG2:51681269-51683269(+)
AGGTAAGCCAAGAAATTGTTAGAATTATAATAGAATCATTTGAAACTCTTTAATTTTGATTAGTTTATCCTTATCCATTCATCTCTTGTGTACAATTTTCTTCTGATTTTGGGTTATACCCCTTCTTTCCTTTAAACTTCCTGTAAAGCAAGAAAATCAGAATCGGAGAGAGAAAGCTAACATTTTTTTTCTGTGGAAAAGAGAGAGAAACTTCCATGGAGATTGGCGAAATCGTGGTTGGGATAGAAAAGGCAGGGAAAAACGAGGGAGAGATAGAGGGAAAAAACACAATTTTCCCGGAAAAGGGAATAAAAAAACTCATTGCAAGACCTTTGTTTTTTGTTGAGATTTGATCCTTTACTTTCACTCCCTTGTTCTTGGATATTTGTCTCGACGTGCTATCTCAATCCTTCTCTGTAAAACTTTCCCCCCTCTTAATCCTGTTAATTTTTTTTCATTGATTCTTGAAGAACAAAAATCGTGTTTTGAGTCTCGTGTACGAGAATCTGCTTCAAATTCAGTTATGGGTCGGTTTCAGTTTCTCCAAAAGATTCGTCCTCTTTGTCTATTTGTGTTATGCTGATTTGGTTTGTGTGTCAATGTTAGAAACTGAGTGAAGGTTTTAAGGTTCGATGAAGTGGCTGTGAAATGGAGGATAGATCAGACGGCATACAAGTGAGGTGTGATAAATTTCCGGGTCCTGTGATTCCTAGGACACATTTGAGGATTTGGTTCATTCGTGTGTGCTCAAGCATTGTGCTGTGGACGTGTCTGGTTTTCAGTTAGTGACATTGAGTGAACTATGGCATTCACATTTGATTTCTGGGATTACTAATGGTATATATATCATAGCCCAAGTTCAGCTTCCAATACAAGCGGATAATGGGGTTGTTCAATCAGCTCCTGTTTTTCTTCCCCGAAGTTAGATTGTCGGTTCGATTTAATTTGATTCGGTTTCGGTAGGTTCATCTCGACTTTATTAAGTTCGGTTTGAATTATTCAGTTGGATTCAGGTGGATTCAATTCGATTCGATTTGATTATTGTTTTGTTAAGTTTGTTCGGTTTGATTACGCTCTACTAGGCTAGGCTTGATTCAGTTCAATTCTATTTATTTTGGTTATGATTGACTTCTTTGGCTTGACTCGGTTAGGCTCGTTCAACTCGTTCGGTTGGCTCAGGTTTGCTTGGTTGGACTCGATTCGGCTAAGCTTGATTTGGTTTGGTTGGACTTGACTCGGTTTGGTTCGGTTCGGTTTGATCTGATCCGTTCTGGTCTGGTTTGATTCGGTTTCGTTCGGTCCAGTTCAGCTCCATTTGGTTCGATCCGGTTCTATTCGGTTCATTCCAGTCTTGTCCAGTCCGTTTCGGTTCGGTCCGAGCCAATTTGGTGATCCGGTCCCATTTGACTCGGTCCGGTTCGGTTTGGTCCGGTTCAGTTTGGTCCAGTCTAATTTGGTCCGATTCAGTTTGGTTCGGTCTAGTCCGGTCCGGTTCAATTTTGTTCAGTTCGGTTCGGTCTAGTTCAATTTAGTCCGATCTGATTTAATTTGGTTTGGTCCAATCTGATCCAATTTAGTTCGGTCATTAGTATCTGTTCGGTCATTAGTATCTATATGATCAAACCTAATTTTTATATTGGCCTATACGTTTTAATTGAGAAATGCTGGAAGCGTATGCGTGGGACAAGGAAATTCTGGTGATAAAAATAGTATAGGTGATAAAATCCTATAAAGAGCTTATTCTCCTAAAATTGATCTTAAGTGAAATGATATTCATAAGACATTTTCAGGTAAAATGTTTTTTAACGAAAAAAAGTAAGCTAAAAGTTAAAAAAAAAAAAAAAGGAAAGGAGACTAACCTGCGAGATTTGCGGTATTAGGCTAAATCGCGCAGTAAACCACGCTACTTTAAGGTTTGACTTGATGTCTGAGGATGCTCCCTGTCTCCGCAAAATGCAATCCAATCCGAAACAAAACTGAGTCATTTTCTTGTTTCTGCA


Gene Sequence:
>Vu_11146(+)
AAAGAAAAAGGAGAAAGAAATGGAGGCAGAGCATCATCAAGAGGCCTCGATCGCTATCGGAAGCCTCTACGTTAAAGTGATGACCGACGAACAAATGGAACTGCTAAGGCAACAGATATCTGTCTACGCCACCATCTGCGAACAGCTTGTTGAGATGCACAAAGCAATAACCACCCAACAGGACCTCGCAGGTTTTTCTTCTCTTCTTTTCTGAATCTAACTTTCACAACTGAAAACTGTGCATGTTATCGCTTCACCCTCCTCAGATAATGATCGAAAAACTGAGCGAACAAACACTTATTTTATATAGAAAATCATGGTTACAGGTTATATATTTTTATTTGATGTGGGACTTAAGTTCATAAAATTGTTACACTGTGTTAGTAAACTTAAGATCTGCAATTTGACAGTGGATAAAGAAACAAGGTGAGTGTTTTATCTGTTGTGATGTTTTGGGTCAGGACTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGTTCTGGACACAAGATAACTGCGAGGCAGCGTTGGACTCCAACGCCTCTGCAACTTCAAATTCTGGAGCGAATTTTTGATGAGGGAAACGGCACTCCAAGCAAGCAGAAGATCAAGGATATAACGATTGAACTGGGCCAACATGGTCAAATATCAGAGACAAATGTGTATAACTGGTTCCAGAACAGAAGGGCTCGTTCAAAGAGGAAGCAACTCGCTCCCGCACCAAATGTTGCGGAACCAGAAACCGAGACAGAAATCGATTCTCCGAGAGAGAAAAAGATACGCGCCGAGAGCGTTCAGGTTGTTCAACCCTTTGAGAATTCATCACCTCATAGGATCAAGGACATGTACATCCACAGTCCTGACTTAGGTATTATTAATTAATCTTTCAATTATTGGGATAACTTTTCAATAAACATTCATACAAAAATTAAGAACATCATCGATTTGTTTATGCAGGATTTGAGCAATTGATGAGTAAAATAGATGTTGCAGGCTGTTACGGCTCTTATTTTCTTTGACAGAATCTGTGGAAGGCATGGGTTGAAGATACTTCATATATAACATTAGTTATTTGGTGTTATTTTAAATATTAGTATAATTTACTTATACTGACAACTGGCAAGAAGAGTTAATTATTTCTTCTTCATCAAATCAGAATTTAGTAAGTTCTTTATAACTGTTTATTTAATGTATCTTTAC