Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_11039 LG2 50668030 50669528 PREDICTED: protein SHI RELATED SEQUENCE 5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, photomorphogenesis, photomorphogenesis, anther development, anther development, positive regulation of transcription, DNA-templated, anther development, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, gynoecium development, gynoecium development, gynoecium development, anther development, pollen development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding, DNA binding
SNP Position Effect Amino acid change
G/T 50668611 intron_variant
A/G 50668657 intron_variant
G/T 50668837 intron_variant
A/G 50669005 missense_variant p.Phe175Ser
T/A 50669013 synonymous_variant p.Pro172Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_11039.1
MAGFFSLGGTRRGGPQNKEEGEVEKGDNNIHNNNGNNLLLFRNEEIYNKGFEIWPESYQPQAAPQNLSNYFAFGVGPSRRNCSSVNEEEVSLCVSDESTRFGLTVMRSGGAGSSGMNCQDCGNQAKKDCTHLRCRTCCKTRGFQCQTHVKSTWVPAAKRRERQQQLASLQSPQQFRPENIPKRYHRDTQLVSAPQPIAAESRGHTHNEHFGGVRCVRVSAVDASDEQCAYQTSVNIGGHVFKGILYDQGPESSYTGAVTEGSSGGEPRHLGLITAAATATATTVGGNNPFEPSLYPASLNAFMSGTQFFHPPRS*


CDS Sequence:
>Vu_11039.1
ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACAACGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGCTTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGATATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGCGGAAAGTAGAGGGCACACACACAATGAGCACTTCGGCGGTGTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCGGTGCAGTTACTGAGGGTTCCTCCGGTGGTGAACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGCTTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAGGTCCTAA


Promoter Sequence:
>Vu_11039::LG2:50669528-50671528(-)
ATATTCTACTACTCATGCTTGTTGAATAAAATACAAAAACAAAGAAAAACTATATACTACTAAACGACTTGCTACACACGCTGTAAGAAATACGATTCATGAGAGAAAAACAAACTCACGCAAAATAAGGGAAACGTGCATGATTATTGACTACATTCTCAACTCAAAAACCATTATGTGTATAAACTAAATTTATTTTTGCACCAAGTCAACAATTTAACTCTTTCTTTATGATTCATCAATTCGTAATCACCAATGTGAATTCAAAATACACATAGATGCACTATAATACGATGATGAAATTCTAGTATTGTATGAATGTTTCCTTTTTTGAGTTGGTGAAAATGAAGAGTATCGGAGTACCCCACTTGTTAGCGAGAAATGGCCCGTGTGCGATTTCCATGTAGACGACACGGGATGTATTTCCTGGGTCATGTCTGGCCAAATTTTGCATCACAGGTGTTGACCTCTCACGGAGAAACTCTTTTTCTATTGCCTCCAATGAATTTTCCATCCATTAACATATTATTATGCCACATTGCGAGTCAATCATATAATCATTATGCCAAGAATTTTGAGGTGGAATACGAGGCATGGGACAGATAACACAGCGGGAGTAGTAAACCATTTCATAAATACTCCCAACACCTACCCCACACTCCCTTTCCAATACTTCTACTTCTATTTATTACCTTTTATATCTTTATTATATTAAACATCTTTTATATATAACCATTAATAAATCTATATTGTAATTTTTGGACAAAGAAAGTGTAATTCATAAAAAATATTTACTGTCATTTTAAAACATCCTTTATGATATTGAACGAGACTTGAGAGTTAGAAAATATGGCTACTTATGCTAGGGTAAGAGTTATGAGAGCCGTTGGATAGTAAGGGGTGAAAGATTTGAGCGGTGAAAGGAGGGACGTAGATGCATGTTGATGGTTGATGGTTGAGTGGTGCACAGTACTGGTATTCCACAATGGGGAAGATTGCTTCAGAGACGTTAAAAATAAGAGAAAAAAAATCTTAATTTATGGGGACGGTCAGAGAAAGTACCAGCGGGTTTTCCGGTGCAAGGACGAATAAGCAAAAGCTGGTGATATGACACGTGGAGAAGTAGTGTCCGTTGGATGGTCAAAGCACAGTTGTGGTTCACTCATCCCGGCCGAGATTTATTGAAACTGAAAGAGAACTGTAGAGAAATGCTAAGTGATAGATTTTCATGTTCCTCCACGCACACATGACACACTACCACCTATCTCTTCTCTCTCTCTCTTTCACACACACACTCTCATCAGATGACAGTACCACACTCCCAGTTAGACAGGGCAAGACACCATGGAAACAAAGCTAGCTTGAATTCCTCTCGTGCAGCGTAGGATAGAGCAGTCTAAAGTCTAAACTAGAAAGCAAAGAGGTAGAGAGAGATTGTGTGGGATTGGTGAGACGATATTCATAAATGAGACTTATACAGTAGAGTAGATGGGTGCAGTTACCGTGGCGGCGTAGCAGAAGCTCTAATTCCGTGCCATAATTGCTTCTAAGGGAATTCGGTTTCACCAACTCCAAATCCTCTCTTCTTTACACATTTGATAATTCCTGTGTTTTCTTTAATTTACGTCTTTTTCTTTTTTTGGTGAGAAACAGTTTCCCCCAAAAGCTGCAAAAACTCAACCAGCCCAGAGAAGATCATATTTCAGACGCCCCACCACACAACACATCACACCCACATACTAAGACTGAATAAGACAAAAAAAAAAAAAAGAGAAAGAAAAGAAAACGATCGGGTCAAAAATTACTAGTAGTAAGCAGTAAGCAAACCTAGCAGTGTTTTTTTTTTTTTTTTTTTGTATGTGCAAGGTTAGCCTTAATTAACCCAAAATTTACAGCTGTAGCCCCGATCTTGGGTAAAAGATTTTAAGATTGGGCGAAGGTTCTGCTATGGATATTGTGTCTGAATTGGGGAAAATCGTTTCAGCTTTGGGGTGCAACAA


Gene Sequence:
>Vu_11039(-)
ATGGCCGGGTTCTTCTCTCTAGGTGGAACTAGAAGGGGAGGTCCACAAAACAAGGAAGAGGGAGAGGTGGAAAAAGGAGATAACAATATCCACAACAACAACGGGAATAACCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGTTCGAGATATGGCCAGAGTCGTATCAGCCCCAAGCTGCACCCCAAAACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACTGCTCGAGCGTGAACGAGGAGGAGGTTTCGCTCTGTGTGTCTGATGAGTCAACGAGATTTGGATTAACTGTCATGAGGTCCGGAGGTGCAGGAAGCAGCGGCATGAACTGTCAGGACTGTGGTAACCAAGCCAAGAAAGATTGTACACATCTCAGATGCAGGACCTGCTGTAAGACCCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCAGCAGCCAAACGCCGCGAACGACAACAACAACTCGCTTCCTTGCAGAGCCCACAACAATTTCGCCCAGAGAATATTCCCAAACGATATCATAGAGACACTCAGCTCGTCTCCGCTCCACAACCCATCGCAGGTTAACTTTCATATTACATTACAGTATCGTCCTCACTTCAAATAAATAAAAAATGGTTTAATTAATTGTCTCTCTTCTGTATATAAATGTAACTTTCTTGAGATATGGATTTCAACCTTGTAACTTTTTGAACTAGTCTGCTACCGCTACTACACACAGATGATGATGCACTGAGATCTCGATGTAACACTCATTGTAGTCTTTTATTCTATGACTAGATACAACTGACTAGTCCATAGTATTTGACTGAAAGTATGAAAATGCAACGACGCTCCTTGGTCACCCATCACATTTTTCTCTTGGTTTTTCCGCCCCTCTCTTTCTTCTTTTTTCCATATTCCATCACTGTTTCTGAGTAAAACTGACGAAATTATTTGAGCTCCATCCATGTGAGACTTTGCCAAGACTTTTTTTTTTTTCTTCCTTTTTTCCTCTTGTGATGATAGCGGAAAGTAGAGGGCACACACACAAGTAATTAATATGGTTTAGTTTTGTTTTTTGGATGATTAATTCTTTGATTTAATTAATGTGTGATTTCTTTGTACTTAGGGTTAGAGCTGGGGCATTTCCCACCTGAAGTGAGCACTTCGGCGGTGTTCGGTGTGTGAGAGTCAGCGCAGTGGACGCTTCAGATGAACAGTGCGCGTACCAAACCTCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCTGAAAGTTCTTACACCGGTGCAGTTACTGAGGGTTCCTCCGGTGGTGAACCCCGACATCTTGGTTTAATAACCGCCGCAGCCACAGCCACAGCCACAACAGTCGGTGGAAACAACCCATTTGAGCCTTCACTTTACCCCGCTTCGCTGAATGCTTTCATGTCTGGTACACAATTCTTCCATCCCCCAAGGTCCTAA