Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_10948	LG2	49900455	49902497	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	pollen tube growth, pollen tube growth, pollen tube growth, pollen tube growth, pollen tube growth, pollen tube growth, pollen tube growth
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	structural constituent of cell wall

SNP	Position	Effect	Amino acid change
G/T	49900482	synonymous_variant	p.Pro672Pro
G/T	49900791	synonymous_variant	p.Pro569Pro
G/C	49900806	synonymous_variant	p.Pro564Pro
G/T	49900812	synonymous_variant	p.Pro562Pro
G/T	49900861	missense_variant	p.Ser546Tyr
C/T	49900932	synonymous_variant	p.Pro522Pro
G/T	49900959	synonymous_variant	p.Pro513Pro
G/C	49900961	missense_variant	p.Pro513Ala
T/A	49900962	synonymous_variant	p.Pro512Pro
A/G	49901037	synonymous_variant	p.Pro487Pro
C/T	49901208	synonymous_variant	p.Gln430Gln
T/C	49901590	missense_variant	p.Lys303Arg
T/C	49901591	missense_variant	p.Lys303Glu
C/T	49901730	synonymous_variant	p.Ser256Ser
G/A	49901731	missense_variant	p.Ser256Leu
T/G	49901739	missense_variant	p.Glu253Asp
T/A	49901849	missense_variant	p.Asn217Tyr
C/A	49901855	missense_variant	p.Val215Leu
G/T	49901916	missense_variant	p.Phe194Leu
G/A	49902030	synonymous_variant	p.Ser156Ser
C/T	49902366	synonymous_variant	p.Gln44Gln
T/C	49902447	synonymous_variant	p.Leu17Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_10948.1

MASSFFLLLSLFLFSSLSSFSHALSDVEASFIARRQMMHLEENQDLPDNYVSNYKTNLKFAHTRLKAAYIALEAWKKAIYSDPSNFTSNWSGQDVCSYNGVFCAQALDDKNIQVVAGIDLNHADIAGYLPPEVGLLTDLALLHINSNRFCGIIPHSFSNLRILYELDISNNRFVGRFPEHVLEISELRYIDIRFNDFEGELPPKLFKQSFDAIFVNNNRFSSNIPENIGSTPATVVVIANNNFSGCVPSSVGEMKSLNEFVLVNNNLTGCLPEEIGKLEKVTVFDISYNNFVGVLPRNFNGLKNVEYLSISHNKFTGFVPRNVCSLPHLVNFTFADNYFNGEEEGCVPQKKEPLLEDENNCIPDRPKQKQSNVCNEVISKPVDCSKNKCGHGGSPSSGSPSTPSKSPSPPKSEKQTPSPQPKSPPTPSQQQQPSSPPPTPKPQPPPTPTPQQQQPTPPTPQQPTPSPPPQDDTHSESPKNRERTPPPVHSPPPPVYSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVFSPPPPVYSPPPPVHSPPPPVHSPPPPVQSPPPPVYSPPPPVHSPPPPVYSPPPPVYSPPPPVQSPPPPTPTPSPPMEDVVLPPHFGSSYASPPPPTIAGY*

CDS Sequence:
>Vu_10948.1

ATGGCCTCCAGCTTCTTTCTCTTACTCTCCCTATTCCTCTTCTCATCACTATCATCTTTCTCCCATGCACTTTCCGATGTCGAAGCCTCTTTCATTGCTCGTCGCCAAATGATGCATTTGGAGGAGAATCAGGACTTGCCCGACAACTACGTAAGTAACTACAAAACAAACCTAAAATTCGCTCACACCAGGCTAAAAGCTGCATACATTGCACTCGAGGCGTGGAAAAAAGCTATCTACTCAGACCCCTCAAATTTCACATCAAATTGGTCGGGCCAAGACGTTTGCTCCTACAATGGAGTTTTTTGTGCACAGGCTCTTGATGACAAAAATATCCAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATCGCAGGTTACCTTCCCCCAGAAGTTGGTCTGTTAACTGACCTTGCACTTTTGCATATAAACTCCAACAGGTTTTGCGGGATCATCCCACACAGCTTTTCCAACCTTCGGATTCTCTATGAGCTAGACATCAGCAACAACCGCTTTGTTGGGCGGTTCCCTGAACACGTGCTTGAAATTTCAGAACTCAGATACATTGACATCAGGTTCAATGACTTTGAAGGGGAATTGCCTCCTAAGCTTTTCAAACAAAGTTTCGACGCTATATTTGTGAACAACAACCGCTTCTCGTCCAATATTCCTGAGAACATAGGATCAACTCCAGCCACGGTTGTGGTTATTGCCAATAACAATTTCTCAGGATGCGTGCCTTCCAGCGTCGGCGAAATGAAGTCGCTAAACGAGTTTGTTTTGGTCAACAACAACCTCACCGGTTGCTTGCCAGAAGAAATTGGAAAACTCGAAAAAGTTACGGTGTTTGACATAAGCTACAACAACTTCGTTGGCGTGTTGCCGAGGAACTTCAATGGGCTTAAGAACGTTGAGTACTTGTCCATTTCACATAACAAGTTTACAGGTTTTGTCCCTCGTAATGTTTGCAGCTTGCCCCATTTGGTGAACTTCACATTCGCCGATAACTATTTCAACGGAGAGGAAGAAGGTTGCGTACCTCAAAAGAAAGAGCCTCTGTTGGAGGATGAGAATAATTGCATACCAGATAGGCCAAAGCAAAAACAGTCAAACGTTTGTAACGAGGTGATAAGCAAGCCTGTGGATTGTAGCAAAAACAAGTGTGGCCATGGGGGCTCTCCATCTTCCGGTTCTCCATCAACGCCGTCTAAGTCACCCTCGCCACCTAAAAGTGAGAAACAGACACCATCACCACAGCCCAAATCTCCACCCACCCCTTCACAACAGCAACAGCCCAGCTCTCCCCCTCCGACACCTAAGCCACAGCCACCACCTACCCCAACTCCACAACAACAACAACCCACTCCCCCCACGCCTCAACAACCCACACCCTCACCACCACCACAGGATGATACCCACAGCGAATCACCCAAGAATCGTGAAAGAACTCCACCACCTGTCCACTCTCCTCCACCACCTGTCTACTCTCCTCCACCACCTGTCCACTCCCCACCACCCCCTGTTCAATCTCCACCCCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCTCCTCCACCACCGGTTCACTCTCCTCCTCCACCGGTTCACTCTCCTCCACCACCGGTTCACTCCCCTCCCCCCCCAGTGCATTCTCCACCACCACCCGTCCAATCTCCTCCCCCACCCGTTCACTCTCCTCCCCCACCCGTCCATTCTCCTCCTCCACCCGTCTTCTCTCCTCCTCCCCCAGTTTACTCTCCACCTCCACCTGTTCACTCTCCTCCTCCCCCAGTTCACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCACCAGTTTACTCTCCTCCGCCGCCTGTTCACTCTCCACCACCTCCAGTGTACTCTCCACCACCTCCAGTGTACTCTCCACCGCCACCAGTGCAGTCTCCACCACCTCCTACACCAACTCCTTCGCCTCCTATGGAAGACGTCGTCCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTACCATTGCCGGCTACTAG

Promoter Sequence:
>Vu_10948::LG2:49902497-49904497(-)

ATCTAGGTTTGCCTTTGTATTTTTTCTGCTTCCTTTTAAAAGTAACTGTTGAAGATTCCATTTCTATTATTTATTTGGAAAAATCATAATAAAATGTTTATTTTACAAATTAATTTATTTCAGATTTAACACGTTTATCAAGCTTGTAAAGTGAGGTATGCATCCACTTATATGAATTGGCCTTATCTCTAGTCGATTTGGGACTTCCAACACATCCCCTCACGCCGAGGTATATACATCTCGAGCGTGAGATTAAACATTTTTAATAGGTGGTCCGATAGCGGTCCGATAGCCGGTGGAACAATATGTCCAACAAACAACAAGTATCATTAGGATATGCTCTAATCATGATTCTGATACTATGTTAGAAGTGGACTTTAAACCTAACTCAACCCCACAAAACCAGTTTGTAGAGTAAAATTTACACCAACTTATAAACTATTAATTGATCTTATGTCTAATCAATGTCATATATTGAATTCTCAGTTAGGAGCATGATTACATAATTTGTTGTTTCTTCGTCCTCTCAATTTGTAAATAATTTTTTAAGGTAAGCTCTGCCGTATTGATGGATAATGTGGTTCCTCAAGCCACATAATTATCTTACAGTGCGTGTTGCTTTGCCTAGGAATAGACAATTTTTCAGATAAAGTGTGGTGGCTCTAGCTCAAGAATTATCCATTTATCAAACTCCATTCTATGTGCAAACACGAGGAAGGATGCAAGCTCAACAAGAATGACTGATGATGACAGTTGTTTTATACAGTGATGATGTTTTTGTAAGAGCAAATATATATAGTAATTAGTACTTCACATATTCCCTCACTTTTATGTCAAGATGTTTTAAATTTTCATCTCTTTATAAGGAAAAGAATGAATTGTAAAGGACATTTTGGTGTTCAAATCCTTAAATGCATTATTGGTAATAAATATTGTAATAATATAATATAATTTATTTATTCTATATACTGTGTTTATAGATCTTTTATTTGAATAATTCTGATCACATTATCGTAATTAACTTTATTTAATACTGTTTTCATGTCCTTTAGTAATTACCTCAACTTAATAATAGTTTGGTATTAATAGAATCATGATATTTTAACAATTTTTTAATTATTTTTTAATAATAAATTATGTGTTATTATTTTATTGGTTTGTTTATTTAAAATATATCAATCACAAGTTTTGTTGTAAAATAATTGTCAAAAAATATTGTTAAAAATATATTTTCCTTCCAAAAAATACATATAGTAAAGATCCCATCAAGTGAGGGTTTTTCTTGGTTTCTATTAAAGAAATTTGATGTCTTAAAAAAATAAAATTTATTAATATTTTTTGTCATTAAATCCTAATCCTGAACTAAAGTAATATTTAAAAATAATAATTTTATTGTACATTTTTCAAATGAATAAAATAATTTTTAAATCATTAATTGAAAAAATATATGTACAAAAATAAATAATTGAAATATCTAAAAATATAAGTTAAAGATCAAACGATATTTTGAATCAAATACATAAATATTAACCTTATTATGCAATAATTATTATGAATTAAGCTTAAATAATAAGAAAATTTTGCATATATATATATATATATATATATATATATATATATATAAACTATGAGAATACACAAAAAGAATGAAAGGTGAAACGTTAAAGAAGAGAAGGCATGCAGTGGATGGATATTAACCAGCCATAACTGTTGACTTTGGTCTATGCAGAGGACATAGAAGAAACATAAATTTAGGTAAGTAGCTAATAAATCTATGGTTTTGAAACAAAAATACATCTAAAAGGAAAAACAGTGGAAGGAAGAAGAGGTTAAGAATAAGGAGAAAATAGAAAGAAAGAAGATTATCTATTTTTGTGGCCTGGAATTGAGAAATCACAGCAGAGCCTCTCGTATGGCTTGTAACTTAACCTTCTCTTCTCCTCCTACGTACCTCTATAAGCACTCTTCCCCTTCCAACCTAATGCATCATCTCTCTCAGA

Gene Sequence:

>Vu_10948(-)