People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10702 LG2 47714763 47715554 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 47714847 missense_variant p.Arg29Trp
A/G 47714856 missense_variant p.Lys32Glu
T/G 47715050 synonymous_variant p.Pro96Pro
A/T 47715112 missense_variant p.Asp117Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10702.1
MNMDTDMEKQAMSGGGDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANEDPLLLKPLAQESHADAHAHAAAAAGNSSSFRGNLCKSDSTVESSSSTRTPTATTSSCSTTMHECDGLVQVDHGDMDWTFLKEFDYSNEVFPVGSDYDLYFELHKMHSTSGELLYSTPPPPPFEGYQELTEAEEDPFSHQSFLWNWNF*


CDS Sequence:
>Vu_10702.1
ATGAACATGGACACGGACATGGAGAAGCAGGCGATGTCTGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGGCTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTCCTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCTCTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTCATGCTCATGCTGCTGCTGCTGCTGGGAATTCTTCGTCATTTAGGGGGAATTTGTGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCACCGCCACTACCTCCTCATGTTCTACTACTATGCATGAATGTGATGGATTGGTGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGATTACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGAGCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAAGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA


Promoter Sequence:
>Vu_10702::LG2:47712763-47714763(+)
AATAAGAATTATAATTTTACAAATAATTTACAATTATTTAATATTTTTTATATAATAATATTAATATACTTTTTTGTCACTTTTAGTAAGTCATTCTATAGTTCGAATTTGTAAACTAGAATTCAAGTCTTAGTATTAGTTAGAATTTTAAGTTGGTATTTTGTATATTATTTTCATTTAAAATATACAGAAATGATATATTTCACTAAACAAAAGACTAATAAAAGAGTTTGATGTTAATAACTCAAAACATGAAAAAAAAATGATAATCTTTTATAGAAAACTCAAAAAGATTATTATTATGTTTTTCTATTAATACAGAAAAATCTCGGTGGAGAAAAAAATATCGATTCTCTATAATTTTTTTAGTTTTAATTATTATTAACTTAATTTTCTGCATTTTCAACCCGTAATTCATATAGCTAGAGAATATCATGTTTTTAGAATAAATAGCATGCATCCACAGATTATTGTTTACTCATTCTTGCTGCTTTAAAACTGATTTAAGAAATTTTTTTGAACTGATTTAGATGAAAATAACATATATTTTTGCTTTATACAAATTTATGCAACGTTAAGAGAAATTTAGGATAAATTAAACTATTATTATTCTATCATCATCATCATTAAAAGAGTAAGTTCCATGATGACAAAGAAATAATATTAAAAACAATACCATACAATGATTATGGATTAAAGTGATGTGATATGACATTTCTTAAATTAGTTATATTAAAAAAATGTAAAAAAGTGTTTTCTATGCATATTTAATCGAATATAAAACATACGAGAAACAACACTATATTGTACGTCCACATTTTATGTTTACTGAAAAGCAATAGTAATAATTTAATCGTACACAGTCATTGTGAACGATTATATGTATGCATGTGAATGATAGTATTACGCAATTTCTACAAATAGAAAGAGAAATGTGAAAAGAAGAAAGTGTGAGATGATTTCCAAAGCAAAGATGTAAAATCTATTTCAAGTATAATTTAAGCTCTTGTTTTGTTTTGTTTTAGAAGTAAGTGGGTTTATGTTTAGTATAAGTTCTGAAATATGTTATTATAGTTTTCGTAATTTTTTAAAGGGACGGGTCAAATGATGTTACGAGGAGCACTTCCCCAAAGTGGAGCCATAGAAAATATAGATCATGAAAAGGACCAGAGAAGTCTACACATCCCGTGCGAAACCATTTATCTATTTTAATAAAACAACAATTGACTCCTTCTATCTTTTCGACAACTTAGAATTACCACCATGTCCTTATCTGTTTTGAACCGACCAATATATAATTCACAATGCCAAATTAAGAATATCTATATGAGTAAATATTTTTATAGTGGTGATGAAAAGTTTTTGACGCTATATTGTCATGCATTTTGAGTCACTTTCTTGATTAAAATCCCAAATCATTCCATGCATGACCTAGAATTTTTAATTCACATGCTAATGAAGTTCTTCAAGTTCAGTATCATCACCAGAATAACTACTATCTTGTATATCCTATAAAGGAAGTACAAGATGGATTGTCGCCGCCATTGATATAGTGTTTGCAGAGATAATGGATAGATAAAGTGCAGAGAAACAATATCGAGAAGTAGTGTGAAGTGTGTGGTCCACCAACAAGAGACATGAGCTCAAAACGAAAGAAGGTTGAGCCATGTTAATTTGTTTGTCAACGTCGTACTCCATAATATCCACCACATGCTTTTTCTTATTATTTTTTATTACTGGATTCGAGTTGTAGAATAAAATAATTATAAGGTGGTCCTACCGCGTTGTCTGATACCTTGATGTTCTGGGTGTGACCCATCATCTCCATGCCTCTCACACTCCTTTTACGCTCCTTCTCATCAACACGTTTTCATGTTTAGACCTTGAAAATCAAATCAAAATCCAAATCTAACCCTCAACCCCACGCACTGCACAACCTAAGTATATATATATAAGACCACTTCCTCGTTCTCCTTTGCCGCCGCCAATTCCGCTTGACA


Gene Sequence:
>Vu_10702(+)
ATGAACATGGACACGGACATGGAGAAGCAGGCGATGTCTGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGGCTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTCCTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCTCTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTCATGCTCATGCTGCTGCTGCTGCTGGGAATTCTTCGTCATTTAGGGGGAATTTGTGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCACCGCCACTACCTCCTCATGTTCTACTACTATGCATGAATGTGATGGATTGGTGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGATTACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGAGCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAAGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322837