Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10667 LG2 47394822 47396058 PREDICTED: probable WRKY transcription factor 40 isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 47394917 synonymous_variant p.Asp32Asp
G/A 47394934 intron_variant
A/G 47395001 intron_variant
C/T 47395240 synonymous_variant p.Cys103Cys
C/T 47395246 synonymous_variant p.Asn105Asn
A/C 47395305 missense_variant p.Asn125Thr
T/C 47395378 intron_variant
G/C 47395431 intron_variant
G/T 47395450 intron_variant
G/A 47395453 intron_variant
T/A 47395461 intron_variant
C/T 47395479 intron_variant
T/A 47395664 stop_gained p.Tyr172*
C/G 47395666 missense_variant p.Ala173Gly
T/A 47395914 synonymous_variant p.Val230Val
G/A,C 47395953 missense_variant p.Leu243Phe
A/G 47396049 synonymous_variant p.Pro275Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10667.1
MSLDSEANLSSMEPTCVDTSLNLNVIPSSHTDIAGEVLVEELRRLNSENKMLTATLNHVYENYLALQKQLSEFNRLKKANFDKEETASLKRKVDSENCANLFCVNALTECSSEEETFKKPKQSTNPKVHKVFVRTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSVEDRSVLVTTYEGEHNHGEHQTETSGNSGKSESGEALELVQSRVVDMNGQKSLIQQFLVQQMATSLTRDPNFTAALASAISGNLHHTSTPKR*


CDS Sequence:
>Vu_10667.1
ATGTCCCTTGATTCCGAAGCAAATCTTTCTTCCATGGAACCAACTTGTGTCGACACTTCTCTCAACCTTAACGTTATTCCCTCTTCACACACGGACATCGCGGGAGAAGTTTTGGTTGAAGAGTTGCGGCGTCTAAACAGTGAGAACAAGATGCTAACTGCGACGCTGAACCACGTATACGAGAACTATCTTGCTTTGCAGAAACAGTTGAGTGAGTTCAACAGACTGAAGAAAGCAAATTTTGACAAAGAAGAAACAGCATCGCTGAAAAGAAAGGTTGACAGTGAGAATTGCGCGAATCTGTTTTGCGTCAACGCCCTCACAGAGTGCAGCAGTGAGGAAGAGACGTTCAAAAAGCCTAAGCAAAGTACCAACCCAAAGGTTCACAAAGTTTTTGTACGGACAGATGCATCTGATACCAGCTTGTATGTGAGGGACGGATATCAGTGGAGAAAATATGGTCAAAAAGTGACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCTCCGGGCTGTCCAGTGAAGAAGAAGGTGCAGAGAAGCGTGGAGGATCGAAGTGTGTTGGTGACAACGTACGAAGGAGAACACAACCATGGTGAACATCAAACGGAGACATCGGGGAATTCAGGGAAAAGTGAAAGTGGGGAAGCGCTAGAATTGGTCCAGTCAAGAGTGGTTGACATGAATGGGCAAAAGTCATTGATCCAGCAGTTTTTGGTTCAACAAATGGCTACATCTTTGACCAGAGATCCTAATTTCACTGCAGCACTTGCTTCTGCCATCTCGGGAAATCTACATCATACTTCTACGCCAAAACGTTGA


Promoter Sequence:
>Vu_10667::LG2:47392822-47394822(+)
TGGGAGAATTAAAAAAATTGAAGCAGAAATTTGTTTCCATTAGTTTGGATGCATAAAGAAAATAGTTATAATAACTAAGTAAATTATATATTTTTAAAAAAGAATTTTTCTTTAATATACATTGTTTATTATTTTTAATATTACCAAATATGATTCAAAAAGAAAATTAAGATAGTTCATTTACCTCTCACTGGTGTATGTCTTCTGGTAATGTTTCAATCTCTTAAATTTGTTATTTTCACTATATTTCATCCAGTAGAGACAAAAACTAAAAATCGTTCATGTAGTTTGATTCCTGATTTTATAAAACTAAAAAACCCTTTACTCGGTTCGAGAGGTAGAATATGTTTTTTTTTTTTCCTTTTAATAATTTAAAATCTTGCAGTGGTCCCTTCTCTCTCTCTCTTTTTTTTTTCTTTTTTCTTTTTTCTTTTAAGTTCTCTCAAGTAATTAAGAGTATTTTTTTTTTCAAATGATCCACCTATTTATTCAACATAGAAGTTCTTACGCTATCAATCCACTACAAGTCATTTATGCACTAAGACTACGTGAGAATTGTCGTAAAAATGAACAAATTGCATCTAAACTAGTCAAATTTATTGTCTTATTTAGCTCATATGAAAAGGGATCATTAATTTAAATAAAAGTATGTAAAATTGTCCGTCTTAAAAAATAACAAAAATTGATTGATATATTCATTGTAAACTGTAGTAAAATTACGTTTTTTATTTTGTTCAGGTTGAAATGTTTGCACCACACATGATTCTTTCTTTTATCATTTGTTAGTATGTATGTGTGTGTTCCATGTTTTTTTTTACCGTTCAAATTTAAAAATAACATTGCTTTGATGTAATGACTTGTTGTAAATATTTGTTTATAATTTTTTATATTTATATTTGATTTTGTGAATATTTATTGATAATTGATGTTTTCCTACTATGATTATTGGTATTATTTTCTATCAATATTTGATTCCTAACTCACAAGTTATGAGAATCCGTGACATAGTTCACTGTCTTGAATTGTTAGGACATTAAATGCATGAAGTAGTTTGGAAAGAAATGCATCTGAATGTTTACGTTTGAAATAGATATTAAATATGGGGTGTTGAATTAAAGTACTAGAAATGGAGAAATAGCAAGAGTGGGAAAGATGCTTAAGACGTAGTAGAGTGGAACAAGAAAAAGGAATCAGAAAAAGTGGAATTGAAGCCATAGACTTGGTGCTCGAGTTCACATGTAATAACCAAGAAAGTGCTAAAGGACGGTCAACACCGAAGAAAACTAACAAGAACCTACTCCAATCTCTATGCATATTTTTGTTTCTTTTGCATTTCATATATTCTAGTCAACGAGATAATTTTACGGTCAATCAATGCAAAACTTTCAGATTGACCACTCCATCAACAGATTCTTCTTACTATATCAACATTTCTTTCTTCTTTTTCAAAAAATTCATCTGTCCAACCACAAGTTATATAAAAAAATATTAAATTAATAAAATTGTTAAAAAACAAAATAAACTTTATTTCTCTTAACCCTCTTCTCTTACATTCCATGCAAACATCTTAAGAAAAAGTAATAATACGATATATAAAAATAATTAAAGTAAAAAAAACAACTGTTTAATCAGACACTTATTATAAAAAGCTTCTACACTGTGAGTACACTAATTCTTCTTATTATTATATTATTATTTTTTTAAGAAATACAAGAAGCTTCTTTTTAGCTGCGGAATGCGCGTCCGGGGTTTTAATTACGGACAACATGAAACGAAGGAACTGTACGAGACTGTTTTCTCGTCCTCACTTTCGTGCCACTTTCGTGCAACAAATAATAATAAAAGTCTTCAACTCGCTCTCATATTATTTTCATTCTCTGTCTCTCTCTCTCTCTATATATATATAAGTTCCGTGTCTCATTCTCTTATATCCAATTAAACTAATCTATCTCATCGCTCGTTTTGCGTCAACCAACCATTGTAGCTTCTCTCATTCCCTA


Gene Sequence:
>Vu_10667(+)
ATGTCCCTTGATTCCGAAGCAAATCTTTCTTCCATGGAACCAACTTGTGTCGACACTTCTCTCAACCTTAACGTTATTCCCTCTTCACACACGGACATCGCGGTTAGTATATGTATATACAAACACACACATGCACACTGTAACAGCAACCATCATATGAAATGAACCTTTTTTTAGCGATGATCTAATTGCGTTGGAAATTTTGTGACCAGGGAGAAGTTTTGGTTGAAGAGTTGCGGCGTCTAAACAGTGAGAACAAGATGCTAACTGCGACGCTGAACCACGTATACGAGAACTATCTTGCTTTGCAGAAACAGTTGAGTGAGTTCAACAGACTGAAGAAAGCAAATTTTGACAAAGAAGAAACAGCATCGCTGAAAAGAAAGGTTGACAGTGAGAATTGCGCGAATCTGTTTTGCGTCAACGCCCTCACAGAGTGCAGCAGTGAGGAAGAGACGTTCAAAAAGCCTAAGCAAAGTACCAACCCAAAGGTTCACAAAGTTTTTGTACGGACAGATGCATCTGATACCAGCTTGGTAAGTTCCATCTTTTAAGATTCATCTGCTACTGTTACTGTTTGAGTAATTATGAAAATATCCTTGCGTATATGTATGAAATCACAAATTTTGATGAGTTAAATTACTTGGTTCCTTTACACGATCAATATCAAATAGGCTATTTTATTTTATGAATAGGTATTTGGAGGTTCTAAGAACTAACAAAAGATGCTTAATATGTTTTTGGGTGTTGAAGTATGTGAGGGACGGATATCAGTGGAGAAAATATGGTCAAAAAGTGACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCTCCGGGCTGTCCAGTGAAGAAGAAGGTAAATCAGTAGACGAGTACAGTGATGAATGTTGATTTGTTTTCTGTAACCGATGATGAAGATGTTTGTTAATTAGGTGCAGAGAAGCGTGGAGGATCGAAGTGTGTTGGTGACAACGTACGAAGGAGAACACAACCATGGTGAACATCAAACGGAGACATCGGGGAATTCAGGGAAAAGTGAAAGTGGGGAAGCGCTAGAATTGGTCCAGTCAAGAGTGGTTGACATGAATGGGCAAAAGTCATTGATCCAGCAGTTTTTGGTTCAACAAATGGCTACATCTTTGACCAGAGATCCTAATTTCACTGCAGCACTTGCTTCTGCCATCTCGGGAAATCTACATCATACTTCTACGCCAAAACGTTGA