Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_10639	LG2	47018184	47022712	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	47018674	3_prime_UTR_variant
C/T	47018677	3_prime_UTR_variant
A/T	47018838	3_prime_UTR_variant
C/G	47018992	3_prime_UTR_variant
A/C	47019401	intron_variant
G/A	47019423	intron_variant
A/C	47019520	intron_variant
A/G	47019530	intron_variant
A/C	47019550	intron_variant
C/T	47019604	intron_variant
A/T	47019616	splice_donor_variant&intron_variant
G/T	47019723	synonymous_variant	p.Ile334Ile
A/G	47019726	synonymous_variant	p.Asp333Asp
A/G	47019832	intron_variant
G/A	47020389	intron_variant
C/T	47021077	missense_variant	p.Arg239Lys
T/C	47021078	missense_variant	p.Arg239Gly
C/T	47021165	intron_variant
C/G	47021213	intron_variant
C/T	47021214	intron_variant
C/T	47021405	intron_variant
T/G	47021440	intron_variant
G/A	47021447	intron_variant
T/C	47021450	intron_variant
C/A	47021480	intron_variant
A/G	47021493	intron_variant
A/G	47021509	intron_variant
T/A	47021544	intron_variant
G/A	47021548	intron_variant
C/A	47021564	intron_variant
A/G	47021567	intron_variant
A/C	47021574	intron_variant
G/C	47021588	intron_variant
A/T	47021625	intron_variant
A/T	47021661	intron_variant
G/A,*	47021853	synonymous_variant	p.Leu170Leu
C/T,*	47021857	synonymous_variant	p.Gln168Gln
C/T,*	47021866	synonymous_variant	p.Leu165Leu
G/T	47021880	missense_variant	p.Leu161Ile
C/A	47021884	missense_variant	p.Glu159Asp
C/T	47021887	synonymous_variant	p.Ala158Ala
G/T	47021907	missense_variant	p.Gln152Lys
C/A	47021908	missense_variant	p.Trp151Cys
A/T	47021915	missense_variant	p.Met149Lys
G/T	47021919	missense_variant	p.Leu148Met
G/A	47021953	synonymous_variant	p.Ser136Ser
C/T	47022075	missense_variant	p.Ala96Thr
A/G	47022082	synonymous_variant	p.Thr93Thr
G/T	47022100	missense_variant	p.Asn87Lys
T/G,A	47022101	missense_variant	p.Asn87Ile
G/T	47022109	missense_variant	p.Ser84Arg
C/T	47022110	missense_variant	p.Ser84Asn
C/T	47022120	missense_variant	p.Ala81Thr
C/T	47022138	missense_variant	p.Asp75Asn
G/A	47022148	synonymous_variant	p.Asn71Asn
A/C	47022154	missense_variant	p.Asn69Lys
T/G	47022165	missense_variant	p.Asn66His
T/A	47022168	missense_variant	p.Thr65Ser
C/G,T	47022176	missense_variant	p.Ser62Thr
G/C	47022187	missense_variant	p.His58Gln
G/A	47022196	synonymous_variant	p.Leu55Leu
A/G	47022199	synonymous_variant	p.Leu54Leu
C/A	47022215	missense_variant	p.Trp49Leu
G/A	47022222	missense_variant	p.Pro47Ser
T/C	47022226	synonymous_variant	p.Pro45Pro
G/C	47022236	missense_variant	p.Pro42Arg
A/G,T	47022244	synonymous_variant	p.Pro39Pro
G/A	47022265	synonymous_variant	p.Ser32Ser
T/C	47022304	synonymous_variant	p.Gln19Gln
C/A	47022385	5_prime_UTR_variant
C/T	47022390	5_prime_UTR_variant
G/C	47022409	5_prime_UTR_variant
G/A	47022416	5_prime_UTR_variant
G/A	47022425	5_prime_UTR_premature_start_codon_gain_variant
A/G	47022434	5_prime_UTR_variant
T/A	47022448	5_prime_UTR_premature_start_codon_gain_variant
A/T	47022449	5_prime_UTR_variant
G/A	47022455	5_prime_UTR_variant
A/G	47022466	5_prime_UTR_variant
T/C	47022478	5_prime_UTR_premature_start_codon_gain_variant
C/T	47022502	5_prime_UTR_variant
C/G	47022627	5_prime_UTR_variant
C/A	47022629	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_10639.1

MAYHNPQDLPLHHFTDQQQHHNQTLTDASLLSDPTSKPPSDPHQPAPNWLNNALLRTHYTNSTTTNNNNDNSNSDTNVNAANNSGTNFLNLHTAAADSGQWLARPILHRNQSEIIDDVTAAGDSAMTGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVLAKYSAFGQAIVDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR*

>Vu_10639.2

CDS Sequence:
>Vu_10639.1

ATGGCTTACCACAACCCTCAAGACCTTCCACTCCACCATTTCACTGACCAACAACAACACCATAACCAAACTCTCACTGACGCATCTCTCCTCTCCGACCCTACCTCCAAACCTCCTTCTGATCCTCACCAACCAGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACCAACAGCACCACCACAAACAACAATAATGACAACAGCAACTCCGACACCAACGTTAACGCTGCCAACAACAGCGGCACCAACTTCCTCAACCTCCACACTGCGGCTGCTGACTCTGGCCAATGGCTGGCGCGTCCGATCCTCCACCGCAACCAGAGCGAGATCATCGACGATGTCACGGCAGCAGGCGACTCTGCCATGACCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCAGCAGTCGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCGAGGTTTAAGGCGGAGATTCTATCGCATCCTCTGTATGAACAGCTTCTGTCGGCACACGTGGCATGCCTTCGGATCGCCACACCGGTGGACCAGTTGCCCAGGATAGACGCTCAGCTCGCACAGTCCCAGAATGTGCTCGCCAAGTACTCTGCTTTCGGACAAGCCATTGTGGATGACAAGGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGACGATGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCCGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAAAACGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGATATCAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGATTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCCTCAACTTCCACAGTGTTGAAGAGCAAGCGCAAAAGGTGA

>Vu_10639.2

Promoter Sequence:
>Vu_10639::LG2:47022712-47024712(-)

GTATTGTGGAATGAGTGTATATTGAGTATTGTGGAACGAGTGTCTATTGGGTATTGTGGAATGAGTGTCTATTGTATATTATGGAATGAGTGTCTATTGAGTATTGTGTAATGAGTGTCTATTGGGTATTCTATGATGAGTGTCTATTGGGTGTTATGGGATGAGTGTCTATTAGGTACAGTGGAATAAGTGTCTATTGGGTATTGTGGAATAAGTGTCTATTGGGTATTGTGGGATGAGTGTCTATTAGGAATTGTGGTATGATGGGATGAGTATCTATGGTGCGATTATTGTATGATGGCATGAGAGTGTCTGACATAATTATTATATGATGTTTGTTGAGTGTATCAAAGTAATTATGCATGTTTTTAGATAATTTGTTGCATGTTAGCTCACCCTGCTTGTTTGTGTTTGTGCGATGATCGTATAATTCGTTATACGGAGCAGATGAAGGAATGTTTATATATATATATATATATATATATATATATATATATATCAATTATGAATGATCAAGTGTGAGATTATGGGATGTTACATTCACCATCTCAACCGCTTCATGCATCAAAATGCAAAGAAAAAAAATGACAATTATCATCACATAAACTATTATTCTTAATTATGTAAATTTTTTTTTTTAATTATATAACATTTTATTTTTAATTTTATATATATATATATATATATATATATATATATATATATATATATATCGACACTTTTGAAATATTTGTTTTTAAGATCCATAAGGGAAAACAAGTGCAGGAAAGGTTATAATGAGAAATGAATAATGAGGATAAGTATGTCATAATTAAAAAAAAATCATTTAACCAAGTTAAAAATGAATTCAAATTCAATGTTCGAAAATTGAATTTGCCATTTGGTCCTTAATTATATGAAACCACTTATTATGTCAAATTAAAGATAGTGTGGCAATAGTATACTATCAAATTAAAAAGGTAAATCTTAATTTAGAATACTAATCCTTAATTTGTGTATATAGTTTTAAGAGCTCCTCCATAGTATTCACTTATCACACTAAATGAAAGTGATATTGTAGAAATTATGTATAAAATTAATTCAAACTAAAACTCTTATTCACTAAATAAAAAATGAAAAGTATTTTTATTTAATTAAAAAATACTCTCTAAAACTTAATTTTTTTATATGTCATGCAATGTGGAATTTTAATATTTTATTTATTATTTCTAAATAATTTTAAAAAAATGTGAAAATTCATACTCAAAGTTGTTTGTTTCAAATTAGGCATATTATAAGACTCTAAAACACATTAATAATTTGCCATCAATTTTATTAAACCTAAGGTGTTGCTTTAAAATTAAAAAAATCTATATATTTTTCTTGTAAAAGGTTGACTTCAAATTCATGTGTAGGTTAAGTTTAAAGACTATGTACACCACACAATGGAATAAAATATATGCAACCCGTTCACACGGTAAACCAAGGCTGAATCATAACTACTCTGGGAAAACAAGTTATTTAATATTTTTTTATCAAAATAATGTTTCTATCTTTCATATCAGATAATTTTATTTCATATTCAATTTATAATTTTACCGATACTTTTTATTCAATAAACCATATTAATTAATGATATAAAGCTATGGTTATATTTAAGCATTATTGTATATGAAGGTTACAATTACATCACTACTTTGTAAATCATGTAATAAAAATGAATATAAATCCTACTAAAAAATAATCAATTATTTATTGGTAGAAAACTATGTTACGATGGTGTAATGTTATTTATTTGGTTAAATACGAGTGTGCTTTAATAATTATCAAGTGCAAATGGTTGGAGAATTTTGAACAATGTGGTGTTTAGTGAGGTAAACTAGGAGGACTAAACCATAACAAGACAAATTAAATGATACTTGAAAGGAAACAATTGGGTTAGTTTATTTTATTTTAAAATGTTTTGAGTAAATATATAAATAAAAAAGTATATTTAAAAAAAATAGTGGGGACCATTGTGC

Gene Sequence:

>Vu_10639(-)

ATGCGAATATAAAAGAGTAAAAAGAATGAATTGAAGGAGGGTTGAAGGGCCAGAGTGAAAATAAAAAGAAAAAGAAAATAGTGGGGGTGACGGAAAAAAGCAATTTCCGGAATTAGTAAGTAATGACCGGAAAACCAGAGTGAGAAATACTGAAAACCGCCTTATGTGAATGTGTTGAGTTGTGTGTTTCTCCAAAACCATTAATACAACGTTGTTTGTAACTCAGAACACCTTATGTTCCCTCCATTTTCCATTTTCCTCTCTAGTTTCCTCACTCCTCTTCACTTCGCCATGAACCAATAGCTGCTACCTTTCGCACACAGAGTAGAAAAGAGTTTCATTTCTATCATATATGGCTTACCACAACCCTCAAGACCTTCCACTCCACCATTTCACTGACCAACAACAACACCATAACCAAACTCTCACTGACGCATCTCTCCTCTCCGACCCTACCTCCAAACCTCCTTCTGATCCTCACCAACCAGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACCAACAGCACCACCACAAACAACAATAATGACAACAGCAACTCCGACACCAACGTTAACGCTGCCAACAACAGCGGCACCAACTTCCTCAACCTCCACACTGCGGCTGCTGACTCTGGCCAATGGCTGGCGCGTCCGATCCTCCACCGCAACCAGAGCGAGATCATCGACGATGTCACGGCAGCAGGCGACTCTGCCATGACCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCAGCAGTCGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCGAGGTTTAAGGCGGAGATTCTATCGCATCCTCTGTATGAACAGCTTCTGTCGGCACACGTGGCATGCCTTCGGATCGCCACACCGGTGGACCAGTTGCCCAGGATAGACGCTCAGCTCGCACAGTCCCAGAATGTGCTCGCCAAGTACTCTGCTTTCGGACAAGCCATTGTGGATGACAAGGAACTCGATCAGTTCTTGGTATTTTCTTACTTTCTCCCCCAATTTCACCCTTCTTCTTTTTCCCCTTTTCGGATTAATTATTCATTATTAATTTATTATTTTTTATTATTCATCTCGTGATTATCCCCTCCCGTCCCTCTCTGCTTTTAATTGAGGACTTTCGCTTTTTCCAGCAAATCTAATTTTAAATTAGCGATTTTAATTGTTGTTGAAGACATGGAAAGTTTTCTTGGCCAAGGATGTGTTGTTCCTGGACAGAAAGTGAAACAGACGTAGTTACTTCCTTATTCGAGAATGAAATTATTTAAGTTATGTCAGATGTAGAATGATGGTTATTAATAAAAAAATAAGTAGTTTGGAAACCTGTGCTTTTAATTTTAGTTCTTGAGCTATCTTCATGCCAAATTTCACATTCGGAATGATTTTGCAGCCGAGCCTTTTTACTCCATATGCTTCTCATGGATCTTAAAAACATATATAGTGTTATGTTCTTTATTTTGTCATGGTCTGTGATTATTTCCAGCTTTATTTGCTATGGTGGTTTACAATTCACGATTTTTATATATTTTTTAAATTCCTGCTGCAGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGTACTACTATACTCTTTTTAGTGATTGTTACATCTCAACATCAAAATAAGGGTTGGTTGCATGACAAGTTGGAATAACTTCATTCTAGTACCCTCGACTATGTTCAGGCTATCAAGGAACCAACCTGTAATTTACTCACCTAATAAACACAATATTCTACCAATTTACCTCAGTTCTTTTTAAAGCTGCAAATATATATATATATATATATATTTTAATCACAATTTTAACGGGAAGAAATGTCAAATATTTTATACTAAAATAGGAGTATCATGTGCTAGCTGCTGCTGTGCGTGATTATCTATTCGGTCCCGTGTCTGGAACTTGGGACTAGAGTCCTTTCGGCCAATTAATTCAGACACGGCAATTAATATTAATTCAGATTCAGGGTACTTAAGTTCTCGAAATCAGAAATTTTACCGGCGGTGGGTTGTAACCTCATTTTTTAAATTTTCTTACAAGGTCAAAGTATCAGTCAATACTGCAAGGTGGTAAGGTTCAGTAATAAATGATATGCAAGTCCGTAATGGTTGTTGGACCGAGAGGAACATAGCTACAGGGATTAAACTTTCCTCGTGTTTTCACATACAATGTCTCTGGGTTGGAAAACTTAAAATCTTTGCTTAACTTTATTAAAATTGAAACATATATAGCCAAATAGGGAAGAATATACCAAACCCCTACTCTTTGTCTCAGATAGAATGATGACAATTTCTGTATTGGAAGAAAGCATTGAAGGCTTTAAAGTGCATAGCCCGGTTGTCTGATATTTTTGGCACGTTATGCCGAACCATCGTGTGCTTTGAATGTTACGTGGTGATGAGGCTTTTGGTTAGATTAGCTAACTTTTTGTGCACAAATAAACAGCAAAAGCACACGACTCTTTTTTTTCCATTGGAGGAGTACTAAAGTGATGATTTTTTTTTTCACATGGTGAATGATTGAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGACGATGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCCGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAAAACGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGTAAGGGATTAAATGCAAATAGCTTTTAAAAGTCTGTCTAAGAGTCCCATCGTTTTGAATCTCCTCCCACGTTTTTGACATCAATTATTTTTTTGTTTTTCTTTTTAATTATTATGTAGGGTTATAAAGAGAAAATTGTGGATATCAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGTAAGAACTCTTTGACCCAACTGATTTTTATTTTTTAAAGAAACCCCATCAAATAAATATGCACGAATCTAAGAGTAGGAACAAAGATAGATGTCTCTGTACACATTTATTATTAAATTCAAAGCAAAGGATGAAAATTTGACGCATTTATCTTAGCGGAATTGACCGTTGACCAAATGACCTTGCTTAGTAAGCTTAGTATATGCTGTTTAGATGTTCCTATTTGAAGCTATTGCAGGAGGTGTTTACAAGTGACCCTTTTAAAATGAATAAACTCTGTTTCATGTTTGATTGTGACATGTTTTCTTTATGTTTTTCTTCTTCTCAGGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGATTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCCTCAACTTCCACAGTGTTGAAGAGCAAGCGCAAAAGGTATTCATGTTAAAAGTTGTCATTTCATTAATTCAAAATCTGCACAAGCTTTGTTTGAAAACCAATCTTAATTTTAAAGAAGCAATGCAGGTGATAACAGTGCTGATCATCACATGTAAATGCAAGAAAACTCACTCTACTCTGTTAGTTCGTCTCTGCCGTCAAATTTTGCTCTGCTCAAGGAACAGGTGAACACAGAAGAGGAGTATTAAAGTCTGCAGTGTACGGTGATGCATCGAATTTAGGAAGTTCAATTAGGAATTATATACCAATATCAAAATGGATAACTCCATGGAGCATGATTTTTAGTCTCATTATTAATGTTTGTGAAATATATAATAGTGAGGGGTTGTGGGTGTATAGTAATAATCTGAGCATTTTTTTTTTCTTCAATCAAGCTAGTTTTGTTGTTGTTATTCTTAAAATGGGTATTTTACATGGAGCTTGGTTTTTTTTGTTCTTAAAATATTGTTCCGATGGTTAGTAAAGAAAGAATATTGAAAGAAAAGAAAAGATATGAATGTATTTGAAGCAAAAATTATTACAGGAATTATTAGGAGGAATATGGAGTTTTCAATATGTGGTAGAATAAAATAATGGTGAGTTGGCATTGTATTGGGTTGTCGCTCCGCTCCATGATCAAGTGACTGTAAAGTCATAATCACGAAATGGAATAACTTGGTGAAATTTGGAGGGTGAAAAACATAGTTCATAAATTCTTAAGAATGTCTGGTTGGAGGGTAAATGTTGGTGTGGCGGTTTATGACTGTCTGTAGATGTATTTATAGTTATGAAAAGTTCAGGTGGAGCAGACAGACTAACAGAGAAAACGGATATAAATCTTTTGTTTTTATTTTCTTTAGATACAAATGGCTCACACCTGCAATTTTTGAGTGGTCCCCTTGGTGATATTTTCTTTGTGGTCTGTATTTCCTGAGTATTGGCAAATATCACATATGAGTGTTTCTG