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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10610 LG2 46704686 46707139 PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 46704953 stop_gained p.Arg611*
G/T 46705439 synonymous_variant p.Pro567Pro
C/A 46705456 missense_variant p.Ala562Ser
T/C 46705926 missense_variant p.Lys405Arg
A/G 46705960 missense_variant p.Ser394Pro
A/T 46706032 missense_variant p.Cys370Ser
G/C 46706111 stop_gained p.Tyr343*
T/C 46706112 missense_variant p.Tyr343Cys
G/C 46706116 missense_variant p.His342Asp
A/G 46706117 synonymous_variant p.Leu341Leu
G/T 46706259 missense_variant p.Pro294His
T/C 46706329 missense_variant p.Thr271Ala
T/A 46706552 synonymous_variant p.Ala196Ala
A/G 46706662 synonymous_variant p.Leu160Leu
C/A 46706770 missense_variant p.Gly124Cys
C/G 46706977 missense_variant p.Asp55His
A/G 46707026 synonymous_variant p.Gly38Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10610.1
MGKDWSLLHIVGTLFLLCKVCLAANQYTGRISAGGIKGSQMNWIDRNGQFLVSNDGEFSFGFVTTANDTTLFLLSIIHVRASRVVWSANRAVPVANSDNFVFDDKGNAFLQKDGTVVWSTNTGGKGVSSMELRDTGNLVLLGSDNSTVIWQSFGHPTDTLLPTQEFTEGMKLVSNPSTNHLTHILEIKSGIVVLSASFQTPQPYWTMQTDSRRTINQGGDEVASASISGNSWKFYDKRKSLLSQFIFSSGQDSNSTWIAVLGSDGFITFSTLGSGGSNAASETIPEDSCGTPEPCDAYSICTGNKRCSCPSIIPSCKPGFDSPCGGDSGKSIQLVKADDGLHYFALQFLQPFSKTDLAGCQTSCRGNCSCLAMFFQRSSGNCFLLDSVGSFQKSDSDPGYVSYIKVSNEGGSGSGSGGGGSGNKHTVVVVIIVLVSFFVICGLVFWGVRYQRRKQRVPESPSDGSEEANFLENLTGMPIRYSYKDLETATNNFSVKLGQGGFGSVYKGVLADGTQIAVKKLESIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGSHRMLAYEYMPNGSLDKWIFKKNKEKSHFPTFAFKMMEEGKVRDIFDSVLRIDENDERFQCAIKVALWCIQEDMSMRPSMSRVVQMLEGLCTVPNPPTTSFLGSRLYSAVFKSSSEGGATTSSAPSDCNSDAYLSAVRLSGPR*


CDS Sequence:
>Vu_10610.1
ATGGGAAAAGATTGGTCTTTATTGCATATTGTGGGCACCCTTTTCCTTTTGTGCAAAGTTTGTTTAGCTGCGAATCAATATACCGGAAGGATCTCAGCCGGGGGGATAAAGGGTTCTCAAATGAATTGGATTGACAGAAATGGCCAATTCCTCGTATCAAACGATGGAGAATTTTCCTTTGGCTTTGTCACCACAGCGAATGACACCACCTTGTTTCTACTCTCAATCATCCACGTGAGAGCTTCCCGGGTCGTTTGGAGTGCTAATAGAGCAGTTCCTGTTGCTAATTCCGACAACTTTGTGTTTGATGACAAGGGCAACGCCTTCTTGCAGAAAGATGGAACCGTGGTCTGGTCCACGAACACAGGCGGCAAAGGGGTTTCTTCAATGGAATTGCGTGACACTGGGAATTTGGTCTTGCTTGGGAGTGATAATAGTACAGTGATTTGGCAAAGTTTCGGCCATCCAACAGATACTTTGCTTCCAACTCAGGAATTCACAGAGGGAATGAAACTCGTCAGTAATCCTAGCACGAACCACTTGACCCATATTCTTGAGATCAAGTCTGGTATTGTTGTTCTCTCCGCAAGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAGACGGACAGCCGCAGAACCATCAACCAGGGCGGCGATGAAGTTGCTTCAGCAAGCATTAGTGGAAACTCGTGGAAGTTCTATGACAAGAGAAAATCGCTGTTGTCGCAGTTCATTTTCTCTTCAGGTCAAGACTCAAATTCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACCTTCTCCACCCTCGGCAGTGGAGGGTCAAATGCTGCTTCTGAAACAATTCCCGAAGATTCTTGCGGTACTCCAGAACCTTGTGATGCATATTCCATATGCACGGGTAACAAGAGGTGTAGCTGCCCTTCTATTATTCCCAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGTGACTCAGGAAAATCCATTCAGTTGGTTAAAGCTGATGATGGACTTCATTACTTTGCTCTTCAATTCCTTCAACCGTTTTCCAAAACCGATCTGGCTGGTTGCCAAACATCTTGCCGTGGAAACTGTTCTTGCCTTGCTATGTTCTTCCAGAGAAGTTCGGGGAATTGTTTCTTGTTGGACAGTGTAGGAAGCTTTCAGAAATCTGATTCTGATCCTGGTTATGTTTCTTATATCAAGGTCTCGAATGAAGGAGGTTCTGGCTCGGGTTCTGGGGGCGGTGGAAGTGGCAATAAGCACACCGTAGTTGTTGTGATAATTGTCTTAGTAAGCTTTTTTGTCATTTGTGGTCTTGTCTTTTGGGGAGTTAGATACCAAAGAAGAAAGCAAAGGGTGCCCGAGTCTCCTTCAGATGGCTCAGAAGAGGCAAATTTCTTGGAAAATTTAACCGGTATGCCAATCCGTTACAGCTACAAGGACCTTGAAACTGCCACCAATAACTTTTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAGGGAGTTCTAGCAGATGGAACTCAAATAGCAGTGAAGAAATTGGAAAGTATTGGACAAGGAAAGAAAGAGTTCAGGGCCGAAGTTAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTAAAGGGTTTCTGTGCTGATGGATCTCATAGGATGCTTGCTTACGAGTACATGCCCAATGGCTCCTTGGATAAATGGATATTCAAGAAAAACAAAGAGAAATCCCATTTCCCAACTTTTGCCTTTAAAATGATGGAAGAAGGGAAGGTGAGGGATATATTTGACTCGGTGTTGAGAATCGACGAGAACGATGAGAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGAGTAGAGTTGTTCAAATGTTGGAGGGTCTTTGCACTGTTCCTAACCCACCAACCACTTCTTTCTTGGGTTCTCGCCTTTATTCCGCTGTCTTCAAATCCTCCAGTGAAGGAGGAGCCACCACCTCTTCTGCTCCCTCAGACTGTAACAGTGATGCTTACCTCTCTGCTGTTCGTCTTTCAGGGCCTAGATAA


Promoter Sequence:
>Vu_10610::LG2:46707139-46709139(-)
AACCATTTTAAGGTTTAATTAATTTTTAATCATTCAAAAACAATAATGTAACTATCCTTTCAGTTGGAACTGAAGTTGACAGTTTAATAAATCATCACTATAAATTTGTAATAAATTACATTATTGCAAAATAAACGTCATTACTATTTATTTGTTATCTTTTGGATAAAAGAAATATTATACAGTTAGTCTGTTAAAAATTAAAGGTTTAATTAGTTTTTCATTAATTACATACCTAAGTAAACAAATAAATAATGAAACTTACGAGATAACTATGCCTATTTTTAATATTTTTTTCATTTATAAATTATTAATCATTGTCCTGTTAACCATGAAAAAAATATTTTTTTAAGTTGAAGAACAAGAGAAAAACTTGAGGAAAAAACCTCTTAGTAATTCAAATTATTTATATCACAAGGTCCAATATAATGTTTTCTTAAATCATAAATAAAATTAAAGAATAGTTTAAAAAATTAAAAAATTTATAATTTTATTTTAATTTTACAAAACTAAAAAACCTGAATGTGTAATTTTTATTTTTTATTATTTTTATGTGTTTTTGAGTTCTATTCTTAAATTTGTAGGTTTTATTAAATTTATATGCTTATATATAGAAATATAAAAAATTAATATAGACACGAGTTATACACGCATTTGTATTTTTGAGAAAAATTTTATTTATTTTTAAATTAAAACTCTGATTTTTATCTAAAATTAATATTTTTATGACGAATTTTCACTTGTATTATTTTTTTTTCTTCAAAGCAAAAGTTATCTTGTCCAAAAAAAAGAAGAAAAGAGATTATTAAAATTTGTTAATAAAAAGTTAGAAATAGGTTAAAAGTTATTATCTTTAGTATTTAGAGTTATAAATTTCTTATATTTATTTAGAGTTAAATATGTTTTTAGTCTCTAAATTGGTCGTTTTTGGTTTTTATTCCTCTTTCAAAATAAGGTATAATTTGATTTTTATTTTTTTCAAAATTTTGGTTTTAATCCTCGAAAACTAACACCGCTAAAAATGTGGTAATTTTCAAAAACTAAAACCAAAGTTTCAAAAATTAAAATTAGAATTTAAAAAAAAATAAAAATCAAATTATACTTATTTTGAAAAAAGAACAAAAAAAAAAAACTAATAATTTAAAAATTAAAATCATATTTAACTCATTTATTTATTTGGTGTGGAGTGATTGTTATGAAATAATGGGTAAATCCATGAATCCTAGAAAAATGAATTTAAAAAGGAAGAAGACACCTTCCTTAAATGCTTTTGACGTTCAAAACCAGAATTAGCTGTAAAGTACAGAGGCAACCAACGTGAGATCTAGAGTCTGAAACCATTTCATCCACCAAACTGCATATACAAAATATACAAATACAAACACACACAACACCACCTTCGTTCATTCATTGCTATCAGTAACAAGTCACTGTTGTTCTGCTTCCACCCCACCCCATCGTTGCAATCTCATCTTTCTATCTATTTATCTATCTCTTTTCACGTGCCAGATAGACTCATGGTCAGACCATGAGTACTTTCTCCAGTTGTCATTGTTGACTTTTTCTTCTACTCTCTTCTCTTCTTTCTCTGCTCCTCCATAACCACAAACCCGCCGTGCCGTATCCACCCTTCCGTTGCACACTTCCTTTTCAATCACCCTTTTACTCAATGCTCACACTCCGTTTTCTCACGTGTTAAATCACTATTCATTGTATTAAAATTCATCTTTTATTTTTCTTGGTTGGTCAATCCTCTATTCTTCTTACCCCTTTTGCGCTGTTCATCTTCTCTCATTTCTTCTTTCTCCTTATCTTGGATGACCTTGATGTAGCATTGAATTAAAGATAAAACCGCTAGAAAGATCTTATCTTTACTTCTTATTCTATTCTGGGTTGTTGGGCTCGTATTGCTACGGTTAGATTTTTTTCTTTTGCATTTTCTTTCAGATGAATTTTATTTCTTACCTGTTCGTTTGATTTCCATTCGCTGTTGGGTGAGC


Gene Sequence:
>Vu_10610(-)
ATGGGAAAAGATTGGTCTTTATTGCATATTGTGGGCACCCTTTTCCTTTTGTGCAAAGTTTGTTTAGCTGCGAATCAATATACCGGAAGGATCTCAGCCGGGGGGATAAAGGGTTCTCAAATGAATTGGATTGACAGAAATGGCCAATTCCTCGTATCAAACGATGGAGAATTTTCCTTTGGCTTTGTCACCACAGCGAATGACACCACCTTGTTTCTACTCTCAATCATCCACGTGAGAGCTTCCCGGGTCGTTTGGAGTGCTAATAGAGCAGTTCCTGTTGCTAATTCCGACAACTTTGTGTTTGATGACAAGGGCAACGCCTTCTTGCAGAAAGATGGAACCGTGGTCTGGTCCACGAACACAGGCGGCAAAGGGGTTTCTTCAATGGAATTGCGTGACACTGGGAATTTGGTCTTGCTTGGGAGTGATAATAGTACAGTGATTTGGCAAAGTTTCGGCCATCCAACAGATACTTTGCTTCCAACTCAGGAATTCACAGAGGGAATGAAACTCGTCAGTAATCCTAGCACGAACCACTTGACCCATATTCTTGAGATCAAGTCTGGTATTGTTGTTCTCTCCGCAAGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAGACGGACAGCCGCAGAACCATCAACCAGGGCGGCGATGAAGTTGCTTCAGCAAGCATTAGTGGAAACTCGTGGAAGTTCTATGACAAGAGAAAATCGCTGTTGTCGCAGTTCATTTTCTCTTCAGGTCAAGACTCAAATTCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACCTTCTCCACCCTCGGCAGTGGAGGGTCAAATGCTGCTTCTGAAACAATTCCCGAAGATTCTTGCGGTACTCCAGAACCTTGTGATGCATATTCCATATGCACGGGTAACAAGAGGTGTAGCTGCCCTTCTATTATTCCCAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGTGACTCAGGAAAATCCATTCAGTTGGTTAAAGCTGATGATGGACTTCATTACTTTGCTCTTCAATTCCTTCAACCGTTTTCCAAAACCGATCTGGCTGGTTGCCAAACATCTTGCCGTGGAAACTGTTCTTGCCTTGCTATGTTCTTCCAGAGAAGTTCGGGGAATTGTTTCTTGTTGGACAGTGTAGGAAGCTTTCAGAAATCTGATTCTGATCCTGGTTATGTTTCTTATATCAAGGTCTCGAATGAAGGAGGTTCTGGCTCGGGTTCTGGGGGCGGTGGAAGTGGCAATAAGCACACCGTAGTTGTTGTGATAATTGTCTTAGTAAGCTTTTTTGTCATTTGTGGTCTTGTCTTTTGGGGAGTTAGATACCAAAGAAGAAAGCAAAGGGTGCCCGAGTCTCCTTCAGATGGCTCAGAAGAGGCAAATTTCTTGGAAAATTTAACCGGTATGCCAATCCGTTACAGCTACAAGGACCTTGAAACTGCCACCAATAACTTTTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAGGGAGTTCTAGCAGATGGAACTCAAATAGCAGTGAAGAAATTGGAAAGTATTGGACAAGGAAAGAAAGAGTTCAGGGCCGAAGTTAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTAAAGGGTTTCTGTGCTGATGGATCTCATAGGATGCTTGCTTACGAGTACATGCCCAATGGCTCCTTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCAGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTATCTGCACGAAGATTGTGACTCGAAGATTGTTCATTGTGACATCAAACCAGAAAACGTTCTTCTGGACGAACACTTCATGGCGAAGGTTTCGGATTTTGGGCTGGCGAAGCTGATGAATCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACGAGGGGCTATCTTGCGCCGGAGTGGATAACAAACTACGCTATATCAGAGAAAAGTGATGTTTACAGCTACGGGATGGTGCTGTTGGAGATAATCGGAGGAAGGAAAAACTATGATCCTAATGAGTCTTCAGAGAAATCCCATTTCCCAACTTTTGCCTTTAAAATGATGGAAGAAGGGAAGGTGAGGGATATATTTGACTCGGTGTTGAGAATCGACGAGAACGATGAGAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGAGTAGAGTTGTTCAAATGTTGGAGGGTCTTTGCACTGTTCCTAACCCACCAACCACTTCTTTCTTGGGTTCTCGCCTTTATTCCGCTGTCTTCAAATCCTCCAGTGAAGGAGGAGCCACCACCTCTTCTGCTCCCTCAGACTGTAACAGTGATGCTTACCTCTCTGCTGTTCGTCTTTCAGGGCCTAGATAA

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