Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_10319	LG2	43660596	43662158	PREDICTED: serine/threonine-protein kinase-like protein At3g51990	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	43660662	missense_variant	p.Lys499Asn
A/G	43660758	synonymous_variant	p.Ser467Ser
C/T,*	43660975	missense_variant	p.Gly395Asp
C/T	43660976	missense_variant	p.Gly395Ser
A/T	43660981	missense_variant	p.Val393Glu
G/A	43660987	missense_variant	p.Ser391Phe
C/A	43660997	missense_variant	p.Gly388Trp
T/C	43661405	missense_variant	p.Ile252Val
A/T	43661407	missense_variant	p.Ile251Lys
C/T	43661821	missense_variant	p.Arg113His
C/T	43661829	synonymous_variant	p.Pro110Pro
G/T	43661883	stop_gained	p.Cys92*
C/T	43661884	missense_variant	p.Cys92Tyr
G/C	43662114	missense_variant	p.Cys15Trp
G/A	43662121	missense_variant	p.Ala13Val
C/T	43662128	missense_variant	p.Ala11Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_10319.1

MGYLSCNAQSAIATCDPHFKKHKPLPAKPIRHFNYAEISAAASGFSADTFLGRGSHGRVYKATLDGGKLLAAVKTTKLVSASKNHSTKCTGCGNCTSPVENEIEILSQVPSPRVVNLIGFSTDPNGNKLIVVEYMPNGSLHDLLHSVRKPPGWNRRVRFAVQVAKAVRELHSSNPPVIHRDVKSSNVLIDERWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSIVDWAVPLIKLGDFAGICDRRIGTPTDPAVVRQLAVLAARCVRSKAEKRPSMAEVVECLNLARKRIRASPVLMSLRRRVARMESAVPVVAWEECDDNSINDCDRSEKFVSMVKGGSGSRRKGKVSSVWGVGYGSEASNNNKVIRSKSIGSSSGSVKGSWVKMQPQPTEQGFGRRKVRLKKSKSLGVLQGSVLSHYSENNNSYYSYNNKKKKNNGDDVSVVIGCAMAKLVVTDKSEKKMVEKPLVKLHDESGNVI*

CDS Sequence:
>Vu_10319.1

ATGGGTTACCTCTCTTGCAATGCCCAATCCGCAATCGCCACCTGCGACCCTCACTTTAAGAAGCACAAACCCCTCCCTGCCAAACCAATCCGCCACTTCAACTACGCCGAAATCTCCGCCGCCGCTTCTGGCTTCTCCGCCGATACCTTTCTGGGCAGAGGCAGCCATGGCAGAGTCTACAAAGCTACCCTCGACGGCGGAAAGCTCCTTGCCGCCGTCAAAACAACGAAACTGGTCTCTGCTTCGAAGAACCACTCCACTAAATGCACCGGCTGCGGCAACTGCACCAGTCCAGTGGAGAACGAAATCGAGATCCTCTCTCAAGTTCCGAGCCCCCGCGTGGTGAACCTCATCGGCTTCAGCACCGACCCAAACGGTAACAAATTAATCGTCGTTGAATACATGCCCAACGGTTCGCTCCACGATCTATTACATTCCGTTAGAAAACCTCCCGGTTGGAACCGGAGGGTCCGGTTCGCGGTTCAGGTTGCGAAAGCGGTTCGCGAATTGCACTCTTCCAACCCTCCCGTTATTCACCGCGACGTTAAGTCTTCCAATGTTTTAATCGACGAGAGATGGAACGCGAGGCTCGGTGACTTTGGCCTTGCGTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCCGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTGGCGCCGGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTGCTGGAGATAATCAGCGGCCGGAACGCCATCGACGTCAATTATAGCCCTCCCTCTATTGTGGACTGGGCGGTGCCGCTGATCAAGCTCGGCGACTTCGCCGGAATCTGTGACCGCCGGATCGGAACGCCGACGGACCCCGCCGTGGTGCGGCAGCTCGCGGTGCTAGCTGCCAGATGCGTGAGATCGAAGGCCGAGAAGCGGCCGTCCATGGCGGAGGTTGTGGAGTGTCTGAATCTGGCAAGGAAGAGGATTCGTGCGTCCCCGGTGTTAATGTCTCTGCGGCGGCGCGTGGCGCGTATGGAGAGCGCGGTGCCGGTGGTGGCGTGGGAGGAGTGTGATGATAATAGTATTAATGACTGTGATAGGAGTGAGAAATTTGTGAGCATGGTGAAAGGTGGGAGTGGGAGCAGAAGGAAGGGGAAAGTATCCAGTGTGTGGGGTGTAGGGTATGGGAGTGAAGCGTCCAATAATAATAAAGTGATAAGGTCAAAGTCCATTGGTTCTTCTTCTGGTTCGGTCAAAGGGAGCTGGGTTAAAATGCAGCCACAGCCAACCGAGCAGGGATTTGGGAGGAGGAAGGTGAGGTTAAAAAAGTCAAAATCTTTGGGGGTTTTGCAAGGTTCTGTACTTTCACATTACAGTGAGAATAATAACAGTTATTATAGTTATAATAATAAGAAGAAGAAGAATAATGGCGATGATGTATCAGTAGTAATTGGGTGTGCAATGGCGAAGTTGGTTGTTACAGATAAGTCAGAAAAGAAAATGGTGGAAAAGCCGTTAGTGAAATTGCATGATGAGAGTGGGAATGTGATTTGA

Promoter Sequence:
>Vu_10319::LG2:43662158-43664158(-)

TTACGTATTTTATTTTTTATTTTATTCCATATAAGATTTTGTTTAGAGCTATGATAGAAAAAGGTGAAAAAGAATGTGTAGGTGGCAAGAGGAAAAATAAATGTCATTTTTTTTCATTTTGCATTTTATGTAAATTTATTTAAAGGAGCTAACATCAATGTTATAATCCAGCAATCACCAAACTGATGAGCCTCATTTTCCATCGAAATTCATTTGATAGCATGAATTATGTGAAGCTTTTTTCTTCTTCGGTAAACTCTTATTTTCAACAAATGGTTTGGGATACCAAAATTTTATTTACAAGTGTGAATAAATTTAAGGAATCAAATATATTAAAATTAAATAATATATATATTTTAATTATATTTAAATTTGTATATATAAAAAAGAATTGGAAAAACCAATACCCCTTAATTCTGGCTTAAGACCCCCCACTGTTGCCACCTAGAGACGTATAACTTTTCTTTATCTGAAAAAAAAAATCATTCTTATTATAAATATTAGTACTTTAATATCAATCACTCTCTTCTAATTTTCTAATCGAGATTGTCTTCTTAAAGACTTTTAATTTTTTGACCCATTTCTTTCTGGCAACTGGAAAAGTACACGTCAATGGACAGAAATCACGTCTGGTTTTAGAATAATATATTTAGCATAATTAATCAAACCAGTCTTTAAAATAAATACTTTTTTTATTCTATGCTCAATCCCCTATTACAAGTTGATATATCTAAAAATTTGGATAAAAATTTGAATTTCGTTGGTTCAACAAGTTATCGTACAGAAAGATGACAGGGGTAATTAAATCTAAGACGTCGACAAATTATTTAATTTTTTTATGAAATAAAGTTTAGTTAAAATAAAAAATGAAGCAATTTGATCTGAATTCGAAAAAAGACAAAATTATATTATTTTTAAAAAATTAAGATTAAATTGAAAATAATACTAAATATAGAATGATATTGAATATAAAATATTAATAAATGATGTTATCATATGAGATAATAATGATTTCACAGTAAAAGAAATTCTTAGTTAAAGAAAATAAAAAAAAAAATATCACAAATTTACATATAATATATATTATTAACTGTCTATTAATTATTTAAATTATCTTAGAAAATGACTATTATAAACTTATTAAAAAAATATTAAAATTAAACCGAAAAACCTGAACGAAAATACCGATTAAATAAATATTTTAACCTTATTTTTAATTAATATCATCTTTTTATTCCTATGATAGATTGTCACAAGTTATTCGAGTAAACAAAATTTTCCGTCAGATATTAGACTTTTCTGATGCCTAAATATTGTGAAACTCCAAATGATCAAAGTAAATATTATGAAAGTCACATTTTAATTATAAATCTCAGGAGGCCAGTCGGAAATTGCAACGTTATATATAAATGTTTAATATAAATCTTCAATTCTAGAGGCATTGTCTCCAATTTAAACATTAAAGTGGGTTTTTTTTTAATGTATCTACTTATATTTTAAGAACTTTATCTCAATTCATCAATCGCAACATGTCAACATTAGGAATTAAATCCAATTTATATCGAAATCCACTTTAATTTCATTAAACTCAGAGATACCATTCACATTAATCATATATATATATATATATATAAATTAATTAGTTTTCGAATACTAGGGTTTTGTTACGCTGCATTTTTTCATTTAATTATTGAAAAGCAAAGAAGAAGAAGAACAGAGTATTATAAGAGATAATGGAGAAAAAGGAATAAAAAAGTAAAAGCAGAATTAAAGAAAAAGAAAAAGGTAAAAAAAAAAAATGAAGAAGTGTGCGTCCATGTTTGGATTGCATTCACATCGTCCTAAAGCTGGGAATCACTTTGCCACTTTAAAGTTGAAAACACCTTTCTTTCCAGTTATGGGTTTTGGCGCCCCATGTGTTCCCTTTTCCACCGTCACCTCTCTCTCTTCAACTTCTCTTTCTCTCTCATTCCTTCAAACCCATTCCAATTCTCACTCTC

Gene Sequence:

>Vu_10319(-)