Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10253 LG2 42902065 42903361 PREDICTED: two-component response regulator ARR14-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 42902107 missense_variant p.Ser15Pro
C/T 42902126 missense_variant p.Ala21Val
G/A 42902211 intron_variant
T/A 42902226 intron_variant
A/G 42902233 intron_variant
A/G 42902235 intron_variant
G/A 42902242 intron_variant
A/C 42902248 intron_variant
C/T 42902256 intron_variant
G/T 42902279 intron_variant
T/A 42902288 splice_acceptor_variant&intron_variant
A/T 42902298 missense_variant p.His46Leu
A/G 42902344 synonymous_variant p.Arg61Arg
T/C 42902348 stop_lost p.Ter63Argext*?
G/T 42902592 stop_gained p.Gly121*
A/G 42902618 intron_variant
G/A 42902659 intron_variant
C/T 42902661 intron_variant
C/G 42902693 intron_variant
C/T 42902701 intron_variant
A/G 42902716 splice_acceptor_variant&intron_variant
G/T 42902728 missense_variant p.Met130Ile
G/A 42902754 missense_variant p.Ser139Asn
C/T 42902758 synonymous_variant p.Leu140Leu
A/G 42902764 stop_lost p.Ter142Trpext*?
G/A 42902776 synonymous_variant p.Gln146Gln
G/T 42902779 missense_variant p.Lys147Asn
G/A 42902785 missense_variant p.Met149Ile
G/T 42902786 missense_variant p.Val150Leu
A/G 42902890 intron_variant
T/G 42902891 intron_variant
A/G 42902902 intron_variant
G/C 42903046 intron_variant
T/A 42903057 intron_variant
A/T 42903075 intron_variant
T/A 42903078 intron_variant
T/A 42903095 intron_variant
A/T 42903096 intron_variant
C/A 42903174 missense_variant p.Ala203Asp
C/T 42903179 missense_variant p.Pro205Ser
G/A 42903184 synonymous_variant p.Leu206Leu
C/T 42903190 synonymous_variant p.Asn208Asn
G/A 42903198 missense_variant p.Arg211His
C/G 42903201 missense_variant p.Ala212Gly
G/A 42903216 missense_variant p.Ser217Asn
A/G 42903227 missense_variant p.Asn221Asp
G/A 42903278 missense_variant p.Glu238Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10253.1
MVRISFEKAFHEFPSNLRILAVDTDSTVLEFIKKICNKYCYEVITCTESLRATEILQERKHDIDLVLMEVHMPKMDGHEFLLANQKIDVPIIVMSWDDNKKSVMKSIKLGGCDYWIKPLHEDRLKNIKVDNVGESPSRKKSRMIWTSEVHGKFVKAVNQIGLANAVPKKLVELMNVPGLTRNHVASHLQKYRNTLKRKPQQSATAIPLHNHLRAEEALSMALNHPMAPYTTNFVFPQSSETMPNSVSVDTLQQQQEMQQWMESFFL*


CDS Sequence:
>Vu_10253.1
ATGGTCAGAATTTCTTTCGAGAAAGCTTTTCATGAATTTCCATCAAATCTGAGGATACTCGCTGTTGACACGGATTCTACTGTTCTTGAATTCATCAAGAAGATATGTAACAAATATTGTTATGAAGTTATCACATGCACAGAATCGTTACGTGCTACTGAGATTTTGCAGGAAAGAAAACACGATATTGATTTAGTATTGATGGAGGTTCATATGCCAAAGATGGATGGCCATGAATTCTTACTTGCCAATCAAAAAATTGATGTTCCTATCATCGTGATGTCTTGGGATGACAACAAAAAATCTGTAATGAAGAGTATAAAACTTGGAGGTTGTGATTACTGGATTAAGCCTTTGCACGAGGATCGACTCAAGAACATAAAAGTTGATAATGTCGGTGAATCACCTTCGAGAAAGAAGTCTCGTATGATATGGACATCAGAAGTGCATGGTAAATTTGTCAAAGCTGTCAATCAAATTGGACTTGCTAATGCTGTGCCAAAGAAACTTGTTGAGCTCATGAATGTGCCTGGTTTGACAAGAAACCATGTTGCTAGTCACTTACAGAAATATAGAAATACTTTGAAGAGAAAACCTCAGCAATCTGCTACAGCTATACCACTGCATAACCATCTTCGTGCAGAAGAAGCTTTGAGTATGGCACTTAATCACCCAATGGCTCCCTATACTACTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTTTCAGTAGATACATTGCAACAACAGCAGGAAATGCAGCAGTGGATGGAGTCTTTCTTTTTATGA


Promoter Sequence:
>Vu_10253::LG2:42900065-42902065(+)
TCAAATAAATGGTTTTAGCAATTGACGAAATGGCAGTTTCTTCCTTCACCTTCATAAGTTTCTTTATGCACCTATCTAAAAAAAATTCATTTTCTCCTTTTCTTTACAATCTGAAAATCATTTGACTTTCGTCAGATTGCAATATCCAAAACTTATTTTTTACTTCTGAATCATGCAATTTGAATTTTCTTTGAAAAAAAACTGATTTTTAAGTTATATAATTCAAAAATCATTTTTCAAATTGTATGATTACAAAAGAATAATATATATATTATTCCTAGAGGAATAGCCATCGAATTTCAGAATCTGATTTCTTTAGAATGTGGTGTGTTTGGAAAAAGTAACTAAATTGTATAATCCGTTGATCACCGAAGATAGATACCGGATTTTGAAATTTAATGATTACACTACTAAGAAACACACATCAAATTTTATGTTTGGGTACACCAATATCCATATTACAAAATCAGGTTAACAATATTAATCTGGAAGAAAAATATCAAATTTCAAAATCTAGTTAACGTAATCGAATCAATTCCGAATTAACAACGTGTAGCGTGTTAATGAACAAAACAGGATTTCACAATTGAACAGGTAAGGTCGATGGTGTTTAAATTTCAATTAAAGAAATATAGAAAATTTTGAATTCTATAGTTCTCATAATATTCTTATATATAATTGTTTAAGAAAAGACTACTTAAATCAAACTTATCTTTTTAGTTTTATTGACACAAAGTATTTAACTATTTTTCCAATTATAATTACATGCTGGTCCATTATCACTTTGCTTACATTTGTTTGAAACAAATCTTATTATGTTTATAATACAATATTTATTCTTTTAATATTCTAAATACGGTAACTTTATTCTTTTAATATTCTAAATACGGTAACTTTCACGTATTTAATAAAAATATATTGTAATATTATTCGTTCATGTGAAAATTATTTTATATAATGATCGAGCATAAGAACTAAATGAGTAAGTGTAGAAAATGTACTATTTTCTTTAACATTTATTTGATCTAAATCTAGTTTTTGTTTTGTAAAAATAACCATAATGTACTTTAAAATCACAATTTATAGTTATTCAATCAATCAGAATGCATACTGACAGCCCTTGATTGATTTTATAATAACTAACTATTTATTTAGTTAACTTTATGATAAAATAAATTTTAATATTTTAATCTCATTTTGAGTATTCATGAATTTTCTAACTATTTTTTTTAATGACCCATTGTCATTATTTTTTCAATTATAACTAAATAATCAATTCATCATTAAAAGCTTTTTTTCATTTTATTTTTGAAACCTATAATCACGTATACATGTAACTAATTTAGTTAGACATGTAATTAATATTAAATGCATGATAAAGAATTTACAATCTTTAAAAAGAAAAAAAAACATGTGAGATGATAAAAAGAGATATCAATTCGGTTAGGATAGTTCTAACCTATCTCGAATCAAATTTTAAAATGTAGATTTTAATTTAAACTATAAATGATTCAAAATCTTACAACCCAACCTAAACATTTAGACATTATATATTTAAGCGATTCAATAACTTCGCGAATAAAAAAAAAATAGTTATTTGATATTTTTTTACGAACTAAAATCTTAATTGAAAATAAAAGAAAGTCTTTCAAAATCATCCCCAATAATGGTTCTTAAATGCTTGTATTCTTTTATACTCAATTCTTCAATAACAAGTCACTAAAGATATTTAAATAAGTGAAACAAAATAACGAACCAACTATTTTTTATGCATTTTCCAACTAATTTTATCAATTACCACAATTAACTATAATATTAAATGTCTATCATAATTAATTGACTGTCTTTGAAAAGAAAAATAAAAAGGTTAAAGAATTTGGTTAGAATAGTTTTAATAAATCTTGAATCAAATTTTAAATTGTGAATATAAATTATGGTAAATCTTACATGTATTTTCATTTCATGATCCATTCTATGGTCAAAGAGACATTAGAGAGCAA


Gene Sequence:
>Vu_10253(+)
ATGGTCAGAATTTCTTTCGAGAAAGCTTTTCATGAATTTCCATCAAATCTGAGGATACTCGCTGTTGACACGGATTCTACTGTTCTTGAATTCATCAAGAAGATATGTAACAAATATTGTTATGAAGGTTAGATATAGAATACTAAGTTGATCACTATTTTTTTTGTTAAAGTAAGAGATAATATTTTGTTCTGTTAATGATAATTTTAAGGTTGTTTGCAGTTATCACATGCACAGAATCGTTACGTGCTACTGAGATTTTGCAGGAAAGAAAACACGATATTGATTTAGTATTGATGGAGGTTCATATGCCAAAGATGGATGGCCATGAATTCTTACTTGCCAATCAAAAAATTGATGTTCCTATCATCGGTATGTAACTACTCTTTTATGTTTTTCCTTAGATTTTGAACTTGTTTAACTGATCAAGTTTACTATGCAGTGATGTCTTGGGATGACAACAAAAAATCTGTAATGAAGAGTATAAAACTTGGAGGTTGTGATTACTGGATTAAGCCTTTGCACGAGGATCGACTCAAGAACATGTGGACACATGTTGTTAGGAAGTCTATGAGTGAGAATAGGATGCGAAAAGACTATTTGAGCGGGAATTCTGAATTTGTTTCTTCTTCTACTCTTGAAATTTCAAGAAAAGTTGATAATGTCGGTGAATCACCTTCGAGAAAGAAGTCTCGTATGATATGGACATCAGAAGTGCATGGTAAATTTGTCAAAGCTGTCAATCAAATTGGACTTGCTAGTATGATTCTTTAGCCCTTCTTTTATTTTTCTTTATTTATCCAATATTTAGATTTAATTTATGAGATGTATGTATTAATTCAAGTCCACATTTTAAACATGATTCACAGTTTTTATTGTTACCTTTCAGATGCTGTGCCAAAGAAACTTGTTGAGCTCATGAATGTGCCTGGTTTGACAAGAAACCATGTTGCTAGTCACTTACAGGTTTGTGTCATTTTAGATGCTTGCACTTGTTCAAAGTAAATAAAATTTTGGTTCGTAGATCCTTTATTTATTAAACATTTACAACATTGATTGGCAGAAATATAGAAATACTTTGAAGAGAAAACCTCAGCAATCTGCTACAGCTATACCACTGCATAACCATCTTCGTGCAGAAGAAGCTTTGAGTATGGCACTTAATCACCCAATGGCTCCCTATACTACTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTTTCAGTAGATACATTGCAACAACAGCAGGAAATGCAGCAGTGGATGGAGTCTTTCTTTTTATGA