Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_10217 LG2 42441784 42442845 PREDICTED: ethylene-responsive transcription factor RAP2-4
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 42441803 missense_variant p.Phe7Ser
C/G 42441862 missense_variant p.Leu27Val
A/C 42442014 synonymous_variant p.Ser77Ser
C/T 42442080 synonymous_variant p.Phe99Phe
A/C 42442137 synonymous_variant p.Ile118Ile
T/A 42442140 synonymous_variant p.Ser119Ser
G/C 42442167 missense_variant p.Gln128His
A/T 42442286 missense_variant p.His168Leu
G/A 42442328 missense_variant p.Arg182Gln
A/C,T 42442332 synonymous_variant p.Thr183Thr
C/T 42442342 synonymous_variant p.Leu187Leu
G/A 42442350 synonymous_variant p.Thr189Thr
C/T 42442359 synonymous_variant p.Thr192Thr
G/A 42442377 synonymous_variant p.Leu198Leu
C/T 42442405 stop_gained p.Arg208*
G/A 42442417 missense_variant p.Ala212Thr
G/A 42442442 missense_variant p.Arg220His
C/T 42442457 missense_variant p.Ser225Leu
G/A 42442459 missense_variant p.Val226Met
C/T 42442464 synonymous_variant p.Gly227Gly
G/A 42442469 missense_variant p.Gly229Asp
C/T 42442482 synonymous_variant p.Tyr233Tyr
C/T 42442487 missense_variant p.Pro235Leu
C/T 42442546 stop_gained p.Gln255*
G/A 42442548 synonymous_variant p.Gln255Gln
G/A 42442575 synonymous_variant p.Gln264Gln
C/T 42442583 missense_variant p.Ser267Leu
C/A 42442594 synonymous_variant p.Arg271Arg
G/T 42442620 missense_variant p.Glu279Asp
G/T 42442648 missense_variant p.Asp289Tyr
C/T 42442650 synonymous_variant p.Asp289Asp
C/A 42442653 missense_variant p.Asn290Lys
G/A 42442658 missense_variant p.Ser292Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_10217.1
MAAMMGFYSSTEFQLPSDPFRGELMELLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPIYFPSSPSFPVMYSNNCSASMTHAFADGLSLSNTQNIIGFAHGQPTSLLGLNHLTPSQISQIQAQIQTQSQQQQNPNTLNFLGTKPIPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPPEKGDSEKGSDDNTSNKCCKVEASSSPVTTESEGSEGSSPLSDLTFADVSEPQWEGDSDSFNLYKYPSYEIDWDSL*


CDS Sequence:
>Vu_10217.1
ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAGCTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAACTTCTTGAACCTTTTATGAAGAGTCCTTCCTCAACCCCTTCCTTTTCTTCCTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCTTCACCCTCCTTCCCTGTTATGTACTCAAACAACTGCTCAGCATCGATGACCCATGCATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCATGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATATCTCAGATCCAGGCTCAAATCCAGACCCAGAGCCAGCAGCAGCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCCACGAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACAAGGCTCTGGCTGGGAACGTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGGTGATTCTGAGAAGGGTTCGGACGACAACACCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACGTTTGCCGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCAGATAGTTTTAATCTCTATAAGTACCCTTCTTATGAGATCGACTGGGATTCTCTGTGA


Promoter Sequence:
>Vu_10217::LG2:42439784-42441784(+)
ATTTGTTTCTATATAAGGTGGCGATGAGTAGCCTTTATATTTTGCTATGATTTTGAGTATTGATTTCTCAGATTTATTAGTTCTTGAAGTCGATAGTAGATTTGAAGTGAACTTACATAAAATACTCTGATATTCAAGTAAACGAGTGTTTCAAGCGGTTATGTTCAAATTAGATTATTGGTTAAAAACATATCTATGTATCTATATTTATAAATCTCACCACAACAACTAAATTGAACTTGTTAATTATCTATTAATAGTTATCATTGTTTTCTTTATTGTCTATCAATAAGTGTTATTCTTAATTAATCATTTTTTAATTACTTTAACGATTGCCTCTACCGATTGGTTTACTATTCCTGTTCCTATCCTAAGATGTTTGGTTTATTTACTACGCGTCCGAACATACATTACAATATTATTTTAAATATGTTTGAAATAGTAATTAATAAAATCATGTATATTTTCACAGTGAAATATATATATATTTTTATAAAATATTTGATCAGAAGGGTTGAATTGTGGCAATATTTAATGTATGAATAATAATTGAAATTGCGTGAGAAGAGAAGATAACGGGCATGTTTGGTGGGTAGGCTTACCCCGTTATTCGATTCCGTGCGTCTAGACTCTTCACTCTCGAGTTTGGGTTCATCAGAAACAGTACTGTGACCTAATTCTTGTCCTGGTGAATTACTAAGTACTGGAGAACAACTTTCCAGTCTGATCTATTATTGAACAAAATAATAAAACTATGCAATGCTTGCGTACATAAGTTGGTTCAATTCTTGATTAAACAACCCAATACAAACTAAAACTAATATTAGATTAAATTAAACGACCATCCATTATCTTGGCCATAAGCAAAAGATAAAAGAAACCGCTCCCCACTTCTGAATTGGAACACTGACTCCATCCTCATAATCTATATATTATCTTCTTCTCATTTCTCATTACTTATTTCAATACTCACTTAAACAATTATTTTCTTTAAGCTCCAACTGATAGTGATTTTCATAAAACTACTAATATATGCAGCGGTTCATACTTCCAAGCTAATTAAACTAAATGGAATAGATAAGTAAGCGTACCATGGAGGCAATAGAAAAAAAATTAAGAGAAAGAGAAGGATGCCATCGGAATTTAGAATTCAAAAACTATTGAGGATAAGTAGTTGGACTGAACGCGCACTAAATACGGTCAACACGCTTACAGACAAGACCAAAGAAAATGACAACGTAAAAGAGACCGACACCTGACGGTTTCGAGCGGGCACGTGTCCTTAACAAGGTCCAGGGGGACGCGTGTTGTCATCTGATTGGATAGTTCCATAATCAATTCGGGCGGGTCTTACGTCATGGCCTGCAATTTGCTGAAACTAACCAGTGGTTACGACAGCGATAATTAGGGGATTGATTAAGAGATTAAGAATAGTAATCAGGGTGATAGGGGGCTATATAATGGAAAGAGAGGTGTAAGGCAGAACCAAGAGTGACGAGAGGCCTTCACAGATATTTTTTTCTCTTTCTCCGTTTTCTTCAAAGCTTTCAGTTTTCTGTGGTTGATCTTCTTCTCCTTCTCCCCCCTCTCTGCAACACCCCGCTTCTCTGAATCCCTTTCTGTTAATCATCTGTCTTTCAAACTAAGATTTTTGGGTTTGTCTTTTAACTCACCAAGAAGCAAACTTAGAAGTATTTCTCGAAAGCCAGGTGTTTTCAGAAACGAGATCCAGGTTTTAGTGTCAAAATTCGCTAGTAAAATTTTGATCCCCTCCCCCATTTTTTTTCCCTTTGAAACTAGCCAAGAGGGTTATTTTTGATCCCTCGAAGTTTAATCTTATATTAAGACCACAGGATCAAGGAGGTTGTCTATTTGAAATCTCCTTCATCCTTTCTTTGTAGAAAAAAGTTTTTTTAGTTTTATCTTTGTTTTTTAGATCCGGTGTTTTAATTAACCAGTTGTTCTTCAGTTTTAGAAAGACGCAGGTTGAATTGATCTGA


Gene Sequence:
>Vu_10217(+)
ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAGCTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAACTTCTTGAACCTTTTATGAAGAGTCCTTCCTCAACCCCTTCCTTTTCTTCCTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCTTCACCCTCCTTCCCTGTTATGTACTCAAACAACTGCTCAGCATCGATGACCCATGCATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCATGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATATCTCAGATCCAGGCTCAAATCCAGACCCAGAGCCAGCAGCAGCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCCACGAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACAAGGCTCTGGCTGGGAACGTTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGGTGATTCTGAGAAGGGTTCGGACGACAACACCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACGTTTGCCGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCAGATAGTTTTAATCTCTATAAGTACCCTTCTTATGAGATCGACTGGGATTCTCTGTGA