Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_10133	LG2	41328959	41330470	PREDICTED: nodulation-signaling pathway 2 protein-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	41328985	synonymous_variant	p.Ile9Ile
A/G	41329214	missense_variant	p.Thr86Ala
C/T	41329387	synonymous_variant	p.His143His
C/G	41329618	synonymous_variant	p.Ala220Ala
C/T	41329644	missense_variant	p.Ala229Val
G/C	41329658	missense_variant	p.Val234Leu
C/G	41329690	synonymous_variant	p.Gly244Gly
A/G	41329728	missense_variant	p.Asp257Gly
T/C	41329738	synonymous_variant	p.Gly260Gly
A/C	41330033	missense_variant	p.Thr359Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_10133.1

MEIDMNTDIDAIHNLHFSGYTTITDTTPSSDDDYGCNWNHWSPLVNWDAFTGSHDDFHHLIDSIVSDGPAEYPSPEDHAASNSPSTSITEEDDAEEETAAADDSKGLRLVHLLMAAAEALTGATKSRDLARVILVRLRDLVSHASHGSNMERLAAYFTDALQGLLEGAGGAHNNSKHHYYITCGSHHPRDDHHHHQNDTLAAFQLLQDISPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPGPHLRITALSRTGTGRRSIASVQETGRRLTAFAASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYRAPDSIASFLSGAKELKTRLVTLVEEEVGSSVGGFVGRFMDSLHHYSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRTGEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFNDGYRVEELGTNKLVLDWKSRRLLSASLWTSSSSDSH*

CDS Sequence:
>Vu_10133.1

ATGGAAATAGACATGAACACAGACATCGATGCAATCCACAACCTCCACTTCTCCGGATACACTACCATCACCGACACCACCCCCTCTTCTGACGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCCTCGTCAACTGGGACGCCTTCACCGGATCCCACGATGACTTCCACCACCTCATCGACTCTATCGTCTCCGACGGTCCCGCCGAGTACCCCAGCCCCGAAGACCACGCCGCCAGTAACTCCCCCTCCACCTCCATAACCGAGGAAGATGACGCCGAGGAAGAAACGGCTGCCGCCGACGATTCCAAGGGCCTAAGACTGGTCCATCTGCTCATGGCCGCCGCGGAGGCCCTCACCGGCGCCACCAAGAGTCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAGGGATTTGGTGTCCCACGCCTCGCACGGCTCCAACATGGAGAGACTCGCCGCCTACTTCACCGACGCACTCCAGGGCCTGCTAGAAGGCGCCGGGGGTGCGCACAATAACAGCAAACATCACTACTACATCACATGTGGGTCCCACCACCCCCGCGACGATCATCATCATCATCAAAACGACACCCTCGCGGCCTTCCAACTGCTCCAGGACATATCTCCCTACGTCAAGTTCGGACACTTCACCGCCAACCAGGCCATCCTCGAGGCCGTGGCCCACGAGCGCCGAGTCCACATCGTAGACTACGACATCATGGAGGGCGTCCAGTGGGCTTCTCTCATGCAGGCCCTTGCCTCCGACAAAACAGGTCCACCGGGCCCACACCTTCGAATCACAGCATTGTCCAGAACCGGCACCGGACGCCGCTCCATCGCCAGCGTGCAGGAGACCGGGAGGCGGTTGACGGCGTTTGCCGCATCCCTTGGGCAGCCGTTCACGTTCCACCAGTGCAGGTTGGATCCCGACGAAACGTTTAAACCTTCCTCTCTGAAGCTGGTTCGCGGAGAGGCTTTGGTTTTTAACTGTATGTTAAACTTGCCGCACCTGAGTTACCGCGCGCCCGATTCGATTGCGTCGTTTTTGAGTGGAGCGAAAGAGTTGAAGACGAGGCTGGTGACTTTGGTGGAGGAAGAGGTGGGGTCCAGTGTGGGAGGGTTCGTGGGAAGGTTCATGGACTCGCTGCATCACTACTCGGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGGGGCGAGCCAGGGCCCTTGTAGAGCGGATTTTCTTAGGCCCAAGGATAGTTGGCTCGCTGGCCCGGATATATCGGACGGGTGAAGAGCTGGAGGAGAGAAGGTCATGGGGGGAGTGGTTGGGTGCGGCAGGGTTCAGGGGAGTCCCGATGAGCTTCGCCAATCATTGCCAAGCGAAGCTTCTACTGGGTCTTTTCAACGACGGATATCGGGTGGAGGAGTTGGGGACTAATAAGTTGGTGTTGGATTGGAAATCTCGGCGCTTGCTTTCTGCCTCCCTTTGGACTTCTTCTTCCTCAGACTCCCATTAA

Promoter Sequence:
>Vu_10133::LG2:41326959-41328959(+)

GGGAAAAAAAAATCAATTTCACATGAAAATTAATTGAACTAACAAAAATAAGAAGATTAAATTGGGTAAATACCACAAAAGTTAAGACCAAAATAATAATTAATCCATGGTTATATTAATCCATGGTTAAAATAAAAGGACATCCCGGGTAAATTAAAGAGACAAAAAAGATAATATACTTTGTTTGGAAAATTATATTTTACAACCCAAAAGGTTTTTTTTATTCATTTGATTATATAGTTTATTACTATTCATGTTCTCTTTTTCTTATAACTACAAAACCTCACTTTTATTATGACCGTAGTTGTCAAACGTCGTTATTGGTGTCAAACAATTTTTTTTTTTTCATTTTGTTTTGAGGAAAAGTTTGTCAGAACATGATCTACTCATTTTTTCTTAATTTTTATTTTGTTTCAGTAACAATTGTCTCTAGTTTTACAGTATCCTTATCTGTTCATAATATCTAGACATAGGTTATATACTGATTGGAGAAGTGACAGTTTTTACAATCAGTGACAGTTTTTACAATTAGACTCCTTCATTGGCCAAGAGAGACGAATATAAAATGCGATGAGTCAACTTTCATGAACATGAAAAAGTCAAGCTCTGTAGCAAAAATCAAAGTACGTTTTCCAATGGCATGTTTACAAGTACATGTACGTAAATCGATTCATACACAGAATATTTATAACTTTTAGGTATGTAGAAAGGCATTTTACGTGTATATATACTGCACATTATTAACGTGTTGATTAGCACTAATCACGGGGTGGTCTTCTAATAGGGCTATTTAATTATGTCCCTTCATAATATCTCAAGGTGCTTAGTTTTGTACCTGTGACACAAACACGATCTCGTAATTAAATGAAAAGTAATTCTACATCAAATTAACTTGGCTCGTCACGTTTATTGGCGGCAGCATCGATTATTGCAACTGGGAATAACGCAATGAAAGAGCTCTAGGCATGGGTGGGATCATTTATTTAAAAACCCTAAACGAGGAGTTATGTCACTGAATACGTTATAAAAAGTATATGTGTGTGCCCTTAAAGGTAGACACTGCATAGCCCTTCGTATATTTAGAAGTTTATCTCGGTAATGAAAATTGCGTGCCCTCCTATGTTCTAATTGAGCTGTGTGGAGACTTTTTGAACTTCAACCAATGGCAGAGGAGAAGACATTCCCCCCCAAGTGCTGACGTGGGATGAATATGGTCTCGGCCAATGAGAGAGCGGCACTTCAAGATGACGTGGCTAGGCCACTGAGATAGGCTCGAGAGAGAGAGTTTAAATTTTTTTAACATTTTTCCTTTGAGATACCACTATGAGATATTGAGGGCTATATGTCTTTTTCCTGATGTATCGTATGAGGTTAAAATTAAACTTTTGAACAAAACTTAGCTTTCATGTTGATGATTTCTATATCGTGTTTATGAGGACACAAACGTATTTCATCCAAATAACTTCATCAAAATCTGTAAATATGAATAAAAAATTTAACAAATTATATTAAAAGCATAAGTAATTATATCTTTGTATATAACGCAATATTCAACTATAAATTTTTTTTGAAGATGTATTTTTTATTTTTTATTTTTTATAAATTAATTCTTGATTTCTTTGATTGGTAAGGAGGGAATTGAAAGATAAGTAGAAACAGAAGGAAGGGGTTATGAGTAAATTAAAAGTTAAAAAGTTGTATAAATCCATAAAAAACGGCACTGGTAATGATGAAGAATAGGTAATATTTTATTGAAATTGAATGAAACATAAACTGGGCAGTCATCGGCCGCAAAACTCTGTAGTCACCCATCAATTTTTGGACTTCTACTGTCGCATGCTCCGGACCCTTCTTCCCTTCTTCCATCCTCAACCCCTTTATAAATCTCCCACCCCACCCCACACAACACAACACAACACCATTTCTACATCTACCCACACCTTCTTGCTATTCTCTCTTCTTTTCTCCCCACCCACCAACATACTCAACTCCAACAACCA

Gene Sequence:

>Vu_10133(+)