Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09986 LG2 39123042 39124721 PREDICTED: transcription factor LAF1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of secondary cell wall biogenesis, plant-type secondary cell wall biogenesis, response to water deprivation, response to abscisic acid, plant-type secondary cell wall biogenesis, regulation of transcription, DNA-templated, response to abscisic acid, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to water deprivation, regulation of secondary cell wall biogenesis, response to abscisic acid, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to water deprivation, regulation of transcription, DNA-templated, response to salt, response to abscisic acid, positive regulation of secondary cell wall biogenesis, regulation of transcription, DNA-templated, response to salt
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 39123461 intron_variant
G/A 39123494 intron_variant
C/T 39123525 intron_variant
G/A 39123546 intron_variant
C/G 39123551 intron_variant
G/T 39123891 missense_variant p.Arg142Ile
C/T 39123973 synonymous_variant p.Leu169Leu
G/A 39124027 synonymous_variant p.Ala187Ala
T/A 39124559 3_prime_UTR_variant
C/A 39124568 3_prime_UTR_variant
G/A 39124606 3_prime_UTR_variant
A/C 39124610 3_prime_UTR_variant
C/T 39124634 3_prime_UTR_variant
T/A 39124656 3_prime_UTR_variant
A/T 39124700 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09986.1
MEDSSAGEDPKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNTFLEKRTPHSHQDLLFGTRFGFENGRFFDFRSLDNNKDNNNNTTANNRIVADATPSGSLASWNFASVPTTINGSTVVDRKGGREYFNSSSCSSSVYLSECSRNSDRSFLYRIYPNPAFSLPNYKRVVPTSPFSFLDSDNDGRIKRNFLMSFCDNNSSTFTKLKASTEKDHQQQTPEDETNIEPKEVPFIDFLGVGVSSS*


CDS Sequence:
>Vu_09986.1
ATGGAGGATTCTTCAGCAGGTGAAGACCCTAAGACTTGTCCCCGAGGCCACTGGAGACCTGCTGAGGATGAAAAGCTTAGACAACTTGTTGAACAATACGGTGCTCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCAAGAATTAACAGAAGACCGTTCACGGAAGAGGAAGAAGAGAGGTTACTCGCAGCTCATCGAATTCACGGGAACAAGTGGGCTCTCATAGCGAGGCTTTTCCCTGGCCGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAGTCCAAGTTATGTGGGAAAAGAAGTTTCCAAGATGTTTACAACGATTCCAACACGTTCCTCGAGAAGAGAACACCACACTCTCATCAAGACCTTTTGTTTGGTACGAGATTTGGGTTTGAGAATGGAAGATTCTTTGACTTTCGGAGCCTCGATAATAATAAGGATAATAACAATAATACGACTGCTAATAATAGGATAGTTGCGGATGCTACTCCCTCTGGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCATAAACGGCTCTACTGTAGTGGATAGAAAAGGAGGGAGAGAATATTTCAACAGTTCTTCTTGCTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAAACTCAGATAGATCGTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCTCTTCCCAACTACAAGAGGGTCGTTCCAACAAGTCCTTTTAGTTTCCTTGATTCTGATAATGATGGAAGGATAAAGAGAAACTTTTTGATGAGTTTTTGCGACAACAACTCATCCACATTCACCAAGTTGAAGGCTTCCACAGAGAAAGATCACCAACAACAAACACCTGAAGATGAGACCAATATCGAACCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA


Promoter Sequence:
>Vu_09986::LG2:39121042-39123042(+)
ATGAGTTTATTGGAACTTATAATAACATATAGACTCATTTTAAGTTATTTTTTATTTTCTTTCATTAATTAAACTTTGCTTGAATGGTGAGATTTTTGCTTTCTAACGTCATGTTTGTCTCTTTTTTCTACATGTATAAAAATGACTTATTATAAGCAGAATGAATTTAATATTATATGCTTGGTAATTTAAATACTATAGAGGAACAATTATGTTAAAAAATTTTTTAGGGGTTTATAGACAACATATGCTTGGTAATTCATCTGATTTTTTTTATAATGTGTGTTTTATCCCTCAAAATTAATAAAGTGTTAAAAGAAAATTGCTTACCTACCAATATGAGGCAAGTATTTCAAAGTGTTTAATTCAACATATTATTACTGTATACATGCTGCAAGTATAATATGTGTGTATAATTTTCAATGTTAATTTGTAGACTAATTTTGGGCCTTGTTTATATTTTTAGTTTTAAGTCCTATTTGAGTCTTCTAGAAACAACTCGTAGAAAATTAGTTCTTCTGTTACTTTTAAAAATATAATTATCAATCAATGGACATGGTATTTCTTATCATATATCATTAACTTTAGTCTAACAGACATATAACTTTAGTCTAACATAGAAATTTAAAGGTATTAAAGTATTTTTAACTAAAAATACTAAATTAAAACTTAAAATATAAACAAGAGGTAAAAATATATTAATCAGAAAGGAATTCTTTTTCTTTTCAATTAGATAGTTTAAAATTCAGTAAGTCTTGATTGATAGTTAAACTTTACTTCTTTTATAAATATATACCTTAAACTATATATTTTTTCAATTAGTTTTACATTTAATCTCCTTTTACTAATAAAGACATTAGTTATAATTTTATCTCATGTAATCCTTAAAATTTATCATTTACAAATTTAATATTTTTTTTATTAAACCATATAAAGTAACAAAAGGAAAATTTTCAATCGTTTATTTATTTAAATCCCAATAATTTATTTATTTTATATTTATATGAGATCACTTTTCCAAGCATTAGAATATAATAGATTCAGAAATAAATAAAACAGACTTTTTTATTTTTTATAAATTCATATTTTTTGTATATTCAACATATGAGAAAAATAAACTGTACCAAAAGGATTAATGAGTGATAGGTATTTAATACAAATAATTTAGCTGTAACACAATAAAAGAATACCTATAGGAAAGAAAAAAGAATTTGAATGCAGTTTAAGTTCAAGGTATTTATTTATGGAAAAATATGAAATGTAAGGATCGGTTAAAATGAATTTGAAGTTCATAAATCTAATGAATGTGATAAAATTTTAAAATAAAGATAAGTTTAACATATCTATTTATACCAAATTTAAGAGATATGAATACTCTTTATTTTATTTATTTTTTTAATGAAGTACAAAATCAATAAGTTGGTAACTAATAATATTTTAGGATACACAGAAATATGCAACTCATCATGTAGAATACAAGACACAGAAAAAGGTGCGCAGATGTTTTCTGTATGAGCATTTATTATAGATAGAAATATTTTGGAAGGATTTTATTTTGCATATATAATAATATTTGATGTAAGAATGATAAAATGTCCAACAACTTAGTCTATCGATATTGCTTAGAAACTGCTTCATTTTATGAATGATGTGGGAAATCAACCACAGTCTTCGATCAAGGAGAGACGTCCCTTTAGTAAGAACTATACGGTAACCAAACAAGTGGATTTGATTATTAACGTGGTGAAATGGTTTTTATAATAATTGAGGGAATTTGAAAAGGAACGGCAATAGGAATTTCAATTTTTTTTTGTTTTTTGTTTTTTTTTTTGTTTTTCTTGTTAAAAGCAAAGAGGATTTTGATAAGGTCTCTATTTAAGTACATGTACACAGGGCACAATCTGTCGTGTGAAGACAACAAAAGTGACTTACCATCCACAACCCTAAACCAACCCCTCCTTCCTCCACTTATATATCTTCTTCCTCACTTCTCTTTTCTG


Gene Sequence:
>Vu_09986(+)
GTGCTTGATGTTCAAGATTTCTCGCCGCTACCTTCACCATAATATCTCCACCCTCAACCTCCATCCACAGTAGCCGTCTCCCTTCCTCATTCCATGGAGGATTCTTCAGCAGGTGAAGACCCTAAGACTTGTCCCCGAGGCCACTGGAGACCTGCTGAGGATGAAAAGCTTAGACAACTTGTTGAACAATACGGTGCTCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGTATATATCATATCATATATCATATCATTCATGTATATATTTATATATATATCTCAATCTCTCATAAGTCTGATTGATTTATCATCAATTTAATTAAAAATCTTATAGTTAACACTGGAAGATCTAATTCAAGGGTTTACTATTGATTACCTTTAATTAATACTACTGCACCTGGCTAAAGCCAACTTGATTCATTCCTTAAGCACTTTATGTTTAATATCTGTATACATATATAGATAAAGCTGTTAATTATCTTCATAAAAGTTGTCCATGTCTCTGTGTCTGTGATTCATAATAAACCTTAATCATATGATCATGTTTTGGTTCCTTAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCAAGAATTAACAGAAGACCGTTCACGGAAGAGGAAGAAGAGAGGTTACTCGCAGCTCATCGAATTCACGGGAACAAGTGGGCTCTCATAGCGAGGCTTTTCCCTGGCCGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAGTCCAAGTTATGTGGGAAAAGAAGTTTCCAAGATGTTTACAACGATTCCAACACGTTCCTCGAGAAGAGAACACCACACTCTCATCAAGACCTTTTGTTTGGTACGAGATTTGGGTTTGAGAATGGAAGATTCTTTGACTTTCGGAGCCTCGATAATAATAAGGATAATAACAATAATACGACTGCTAATAATAGGATAGTTGCGGATGCTACTCCCTCTGGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCATAAACGGCTCTACTGTAGTGGATAGAAAAGGAGGGAGAGAATATTTCAACAGTTCTTCTTGCTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAAACTCAGATAGATCGTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCTCTTCCCAACTACAAGAGGGTCGTTCCAACAAGTCCTTTTAGTTTCCTTGATTCTGATAATGATGGAAGGATAAAGAGAAACTTTTTGATGAGTTTTTGCGACAACAACTCATCCACATTCACCAAGTTGAAGGCTTCCACAGAGAAAGATCACCAACAACAAACACCTGAAGATGAGACCAATATCGAACCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAATGACCATTCGATGGTTTAATTATTTAACCTCGTATGATACATCTATGATTGTAGTTTAATTAGATTTCTAGTATTCACCCTCCATAATGAATTCTAGCATTTAGCAAATAGCAATTCTAGTTTATAGTTTTGCAAAAGGCCATCGTAATTATGATGAGGCCTTTCATCATCAGGTTGTGTTTAGAGTGAAAATTTTCCAACTTTTTTTTTTTGTTTATAACTTTAATGTTATTTCCTTTTCCCCGTC