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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09955 LG2 38700704 38704215 PREDICTED: receptor-like protein kinase 2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 38701027 missense_variant p.Glu108Asp
G/A 38701607 missense_variant p.Val302Ile
A/T 38702065 synonymous_variant p.Thr454Thr
T/C 38702147 missense_variant p.Phe482Leu
A/G 38702162 missense_variant p.Asn487Asp
A/T 38702281 synonymous_variant p.Val526Val
C/T 38702287 synonymous_variant p.Leu528Leu
T/C 38702647 synonymous_variant p.Leu648Leu
T/A 38702836 synonymous_variant p.Val711Val
T/C 38703816 downstream_gene_variant
A/G 38703915 downstream_gene_variant
C/A 38704182 missense_variant p.Asn796Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09955.1
MSSNALTLFILFLNISLCPSISALNQEGLSLLSWLSTFNSSDSVAAFSSWDPTNKDPCTWDYITCSKEGFVSEIIITSIDMRSSFPTQVLSFGHLTTLVISNGNLTGEIPGSVGNLSSLVTLDLSFNALSGSIPEEIGMLAKLQLLLLNSNSLKGGIPTTIGNCSKLQHLALYDNQLSGMIPGEIGQLSTLETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTLSVYTAHLSGHIPPEIQNCSALEDLFLYENQLSGNIPYELGSMQNLRRVLLWQNNLTGTVPESLGNCTNLKVIDFSLNSLEGQIPVTLSNLLFLEEFLLSDNSIYGEIPSYVGNFSRLKQLELDNNKFSGNIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCDKLEALDLSHNFLTGSIPSALFHLRNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPPEIGHLRSLSFLELSNNQLSGDIPSEIGNCAHLELLDLHSNVLEGTIPSSLKFLVGLNVLDLSANRITGSIPENLGKLKSLNKFILSGNIISGVIPGTLGQCKDLQLLDISNNRITGSIPDEIGHLQGLDILLNLSWNSLSGPIPQTFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPSAAFAGNPDLCISKCHTSENAQGFNKSIRNVIVYTFLGVVLTSIFVTCGVLLALRIHGGNFGRNFDSDKMEWAFTPFQKVNFSIDDILTKLSESNIVGKGCSGIVYRVETPTKQIIAAYYERRNSNAQGDQARK*


CDS Sequence:
>Vu_09955.1
ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCTTCCATCTCTGCTCTGAACCAGGAAGGCCTCTCTCTACTGTCATGGCTTTCAACCTTTAACTCCTCCGACTCTGTCGCTGCCTTCTCTTCATGGGATCCAACCAACAAAGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCCACTCAGGTCCTTTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACAGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTTTGGATCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTAGCTAAGCTGCAGTTGTTATTGTTGAATTCCAATTCCTTGAAGGGTGGAATTCCAACTACAATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTACGACAACCAGCTATCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGTACTCTCGAAACTCTTAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCAGTTACTGGGGTTTCTGGGGAGATTCCACCGAGTATAGGAGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCACCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTGGGCTCCATGCAAAACCTGAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGGACCGTTCCGGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTTTGGAGGGTCAGATACCTGTGACTCTCAGTAATCTACTCTTTCTGGAGGAGTTTCTTTTGTCTGATAATAGTATTTATGGAGAAATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAATTCTCCGGGAACATTCCACCTGTTATGGGACAACTGAAGGAACTCACCCTCTTTTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGATAAACTTGAAGCACTTGATCTTTCGCACAATTTCCTCACTGGCTCCATTCCAAGTGCCCTCTTTCATCTGCGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGTTGCACAAGTTTGATCAGGTTACGGCTGGGATCAAATAACTTTACTGGTCAAATTCCACCAGAAATAGGTCATTTAAGAAGTTTGAGCTTCCTTGAGTTATCAAATAATCAACTCAGTGGAGATATTCCCTCTGAGATAGGAAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGGAAGGAACCATTCCTTCATCTTTGAAATTCCTAGTAGGTCTCAATGTCTTAGATCTTTCGGCAAACAGAATAACGGGAAGCATTCCGGAGAATTTGGGCAAACTTAAATCTCTAAATAAGTTTATTTTAAGTGGAAACATTATCTCTGGTGTGATCCCAGGGACACTGGGGCAGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTAGTGGCCCCATTCCACAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACGGTATTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTTTTCCGGGATCTACCCTCCGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATACAAGTGAAAATGCCCAGGGCTTCAACAAGTCAATAAGAAATGTTATTGTTTACACTTTCCTTGGGGTTGTTTTAACTTCTATTTTTGTCACTTGTGGAGTACTTTTAGCTCTCCGGATTCATGGGGGAAACTTTGGCAGGAATTTTGATAGTGATAAAATGGAATGGGCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATCGATGACATTTTAACAAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCCAACGAAACAGATTATTGCAGCCTACTATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCTCGAAAGTGA


Promoter Sequence:
>Vu_09955::LG2:38698704-38700704(+)
CCTTTGGGAAAGTCCTCTGCTGACTTTCATGATAAGGAACAACTTTATTAAATAGAAGATGATTTTGAGATCTCTCCATGCAGGTATAACAGAAAAGGTTGTAGTTATGTTACTTCTTCTACCACTTCTTAATTACTTTTGTGTTCCTCATTTTCTATTAGGTGAAGCTACTCCATCTTGATACTTGGATTCTTGTGTCGAATTAGATGAACCATCATTGTGGTGACTTGGTAAATTCACAGCAACTCTTGTCACTTGCACCTAAAAGAAAAGGAGAAGAATCGAAAATAGAACTTCTGTCATGTCATTCAAATGCGTCTGAGCAGTTTCTTATCACTGTCTGCTAGTTACCTTTACATATATATATATATATATGAAGGAGAGCGATATACCTGTTGGAAGAGTAAGACTTACACATATTAAAGTTAATTTCTCTGTTCATATAAATTTGACAAATCCAAAAACTGATGTTGTTCTGATAACTTCTATGTCAAAGTTTGTATGTATACTATTTCAGAGTTTGTATTATAGATGATATTTAATTATAATAGAAACTATAATTACTTTTTTTAATAAATTTCTTTAATTGTTAAACATGTACTTAACTTTCTTATATTTTTAATAAAATCACACTCACTTTATTTATTTTATTTAAGAAATATAATATTAACTAAAATTTAAGTAAAAAAATAAAGTTAAAGTTTTAATGTATAAAAATTAGATTATTTTTTTTGTAAACATAAATATTTTTTTTTATAAATATTATATTAAAAATTTAAGTGAGGTAGATATCATTTATTAAAAAACAGTGAAGGATATGTCTTTTGATATAATTTCAGAGGAGGGAAGTGAAAATTTCCTTTAATAATATTAAAAAAATAAATCATACATAAAAATGAAGTTAAATTAATAATATAAGAAATGACTATAAAATTATATGAAACTTTAATATTTAAATAAAAATTCTGCAGTCAGCCGTTGGATTAATGAAATTTAGGTTCTGTAGAAAATTGTGTAACTAGAAATTCTGTTATGGTGAGTTGATAAAAGTATCAGACAATCAGAATAAACAATAATATTGCTTATACTTCCACACAAATTTGATATACAAGTTTATGGATTTCATTTTCTTTTGTGCATGTTGACTACATACAGGGAAAATAGATTAGATTTTGGACCTCCAGCTTCCAGGATTGCTAGATACATTTAGGTTTCAAAGTATATCCAGCATAAGAATGTTGTGTCAGATTATAGTAATACTTGCCTTTTTTTCTATAATTCTATTGTCCAAATTTGTATCTCTCTACAAGTAGCAGATGCACAGGACCCAGTAGACACTATAAAAAGCAATAAAGTCATTTTCCCAACGGATATTCTACTGCATTAGATCTTCTATATTGCTCCATTGCTCTCTCCAGAATCTTGCAAGAGAAATGTTTAGATTTCATAGTGTACGCTTGAATAAGTAGTTGTATACTTCATGAAAGCTCTCTAAAACAATAGTAAAAAATAAGTCATCATTAGAGTTGCTTAAAACACTCTTACACGTCCAATAATGACGTATAAAATTTAAAAGTTTTAAGAAGTTTTCTCTAGAAATTAGAATTATCTCAAGTTAAAAGAACCGATTTTTAAATTTATGAAAAAACTCCCACTACAGATGCTATCAGTAAATATCCAGTGATAAGGATTACAGGTATGAAGGGTTAAATAATACAGAGACAAGTGAAGTAGAAAATCGTGTACTACCTCGTCTTTCCTACCTTTCTGTCGGCTTAATGATGCTTCTAATTTGTCTGTTTCTTTGTTCGGCCTTTGCTGTAAATTCACCACAAATATAAAAGTGAAGCAGTGTTTAAAGAGTAAGGAATGGTCTACATCTTCATCAGTAAACTTGAATGGAGATAAGAGACTTTCAATGTCCAACCATGGTGCTAAAGAGGGCATAGTAGCTGCTATGTTTGGATGAGATACAACAGTAGCAGAACACCACCTCATCA


Gene Sequence:
>Vu_09955(+)
ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCTTCCATCTCTGCTCTGAACCAGGAAGGCCTCTCTCTACTGTCATGGCTTTCAACCTTTAACTCCTCCGACTCTGTCGCTGCCTTCTCTTCATGGGATCCAACCAACAAAGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCCACTCAGGTCCTTTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACAGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTTTGGATCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTAGCTAAGCTGCAGTTGTTATTGTTGAATTCCAATTCCTTGAAGGGTGGAATTCCAACTACAATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTACGACAACCAGCTATCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGTACTCTCGAAACTCTTAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCAGTTACTGGGGTTTCTGGGGAGATTCCACCGAGTATAGGAGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCACCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTGGGCTCCATGCAAAACCTGAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGGACCGTTCCGGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTTTGGAGGGTCAGATACCTGTGACTCTCAGTAATCTACTCTTTCTGGAGGAGTTTCTTTTGTCTGATAATAGTATTTATGGAGAAATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAATTCTCCGGGAACATTCCACCTGTTATGGGACAACTGAAGGAACTCACCCTCTTTTATGCCTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTATCCAACTGTGATAAACTTGAAGCACTTGATCTTTCGCACAATTTCCTCACTGGCTCCATTCCAAGTGCCCTCTTTCATCTGCGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGTTGCACAAGTTTGATCAGGTTACGGCTGGGATCAAATAACTTTACTGGTCAAATTCCACCAGAAATAGGTCATTTAAGAAGTTTGAGCTTCCTTGAGTTATCAAATAATCAACTCAGTGGAGATATTCCCTCTGAGATAGGAAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGGAAGGAACCATTCCTTCATCTTTGAAATTCCTAGTAGGTCTCAATGTCTTAGATCTTTCGGCAAACAGAATAACGGGAAGCATTCCGGAGAATTTGGGCAAACTTAAATCTCTAAATAAGTTTATTTTAAGTGGAAACATTATCTCTGGTGTGATCCCAGGGACACTGGGGCAGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTAGTGGCCCCATTCCACAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACGGTATTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTTTTCCGGGATCTACCCTCCGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATACAAGTGAAAATGCCCAGGGCTTCAACAAGTCAATAAGAAATGTTATTGTTTACACTTTCCTTGGGGTTGTTTTAACTTCTATTTTTGTCACTTGTGGAGTACTTTTAGCTCTCCGGATTCATGGGGGAAACTTTGGCAGGAATTTTGATAGTGATAAAATGGAATGGGCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATCGATGACATTTTAACAAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCCAACGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGTTGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGAAGTTTGTTCGGACTGCTTCATGAAAAGAGATTGTTCTTGGATTGGGATGCCAGGTATAAGATCATACTGGGAACGGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCACAGGGATATTAAGGCAAACAACATCTTAGTAGGTCCACAATATGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAGCTCGTGAATTCCTCAGAGTGTTCAGGGGCCTCTCATACAGTGGCAGGTTCTTATGGATACATTGCTCCTGGTGAGTGTAAAAGCTTTTGTCATTCTAAAACAGCAGTTCCGTTTAAGAAAACTTTCAGTGTTACATCATTATTTTTCAAAAAGTCAATAAAAAAATCACTGCCTTTCTATACTTTAAGACATTCCTTTACTCTCTCTTTTGGTACATAAAAAAATAAAAAAAACCTTTGTGTGCACACTTTAAGACATTTATTTTATTTTAAAATTAGGCTGTTCTTTCTATAATAGTTTCCTGAAACCGTATTAGAATTGAGAGCTATATCCTACTTTAATCTTCTTTTATTCTTGTTTCGTATATTTTGTCCATTTTGGGTCATTATCCCTATGACATTGTGACTGCTGACTAATCACCACAGCATTATCTCTCAAACTGCAGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTTCGGTGTTGTACTTCTTGAGGTCTTAACGGGGATGGAACCAACTGATAACAGTATTCCAGAGGGTGCCCACATTGTCACATGGGTTAGCAACGAAATCCGAGAGAAAAGAAGGGAATTTACATCTATCCTTGATCAGCAACTAGTATTGCAGAGTGGAACCAAAACCTCTGAGATGCTTCAAGTTCTAGGAGTGGCTCTCCTCTGCGTGAATCCATCACCAGAAGAAAGGCCTACTATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCTCGAAAGTGA

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