Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09454 LG2 23490213 23494689 PREDICTED: probable serine/threonine-protein kinase At1g54610
Map

Annotations  
category   relationship type   keyword
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
T/G 23490245 3_prime_UTR_variant
T/G 23490294 3_prime_UTR_variant
G/A 23490388 3_prime_UTR_variant
C/T 23490439 3_prime_UTR_variant
T/C 23490468 3_prime_UTR_variant
C/T 23490495 3_prime_UTR_variant
G/C 23490497 3_prime_UTR_variant
G/C 23490633 synonymous_variant p.Gly520Gly
G/A 23490789 synonymous_variant p.Pro468Pro
C/A 23490985 upstream_gene_variant
A/G 23490986 upstream_gene_variant
A/C 23491006 upstream_gene_variant
T/C 23491134 upstream_gene_variant
A/G 23491135 upstream_gene_variant
C/G 23491300 upstream_gene_variant
G/A 23491309 upstream_gene_variant
A/T 23491317 upstream_gene_variant
C/T 23491839 missense_variant p.Glu342Lys
G/T 23491846 stop_gained p.Cys339*
A/G,T 23491930 stop_gained p.Cys311*
C/T 23492239 upstream_gene_variant
C/T 23492866 missense_variant p.Gly205Asp
A/G 23492875 missense_variant p.Leu202Ser
G/A 23493070 upstream_gene_variant
C/A 23493103 upstream_gene_variant
T/A 23493136 upstream_gene_variant
T/C 23493141 upstream_gene_variant
G/T 23493266 upstream_gene_variant
C/T 23493267 upstream_gene_variant
T/C 23493268 upstream_gene_variant
T/A 23493465 upstream_gene_variant
A/G 23493526 upstream_gene_variant
A/G 23493532 upstream_gene_variant
A/C 23493580 upstream_gene_variant
G/A 23493670 synonymous_variant p.Gly185Gly
C/A 23493785 missense_variant p.Arg147Met
C/G 23493820 synonymous_variant p.Val135Val
C/A 23493850 synonymous_variant p.Val125Val
C/T 23493856 synonymous_variant p.Lys123Lys
T/A 23493862 synonymous_variant p.Ala121Ala
C/T 23493889 synonymous_variant p.Arg112Arg
C/T 23493895 synonymous_variant p.Lys110Lys
G/A 23493904 synonymous_variant p.Asn107Asn
G/A 23493913 synonymous_variant p.Thr104Thr
C/T 23493916 synonymous_variant p.Gly103Gly
T/C 23493919 synonymous_variant p.Gln102Gln
T/C 23494029 intron_variant
C/A 23494404 5_prime_UTR_premature_start_codon_gain_variant
A/T 23494419 5_prime_UTR_variant
G/A 23494424 5_prime_UTR_variant
G/T 23494503 5_prime_UTR_variant
C/T 23494572 5_prime_UTR_variant
A/T 23494604 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09454.1
MGCVLGTPARAGVQRRRRREQREVATGEVNNAVRVRDKERHLHTGDFPGTLPALERRKPILDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILRIADFGLATFFDPKIKQAMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLSGKPIMPGRTEVEQLHKIFKLCGSPSEEYWRKYKLPNATIFKPQQPYKSCISETFKDFRPSSLPLIETLLAIDPDDRGTASGALNSEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALSGKASTVDGVKRGRARERGRAVPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYLQDASNKGPVSLGPDTSFSSGIFNSKPSGPVRSHAGAGHHRGRKAKKEESQMASSWKFIRPFKPSTVGLSMDLLFRSK*


CDS Sequence:
>Vu_09454.1
ATGGGTTGCGTGCTCGGGACGCCGGCGCGTGCCGGAGTTCAGCGCCGTCGCCGGAGGGAGCAGCGGGAAGTTGCTACCGGAGAAGTTAATAATGCCGTTAGGGTTCGAGATAAGGAAAGGCACCTGCATACCGGCGATTTTCCGGGGACTCTTCCGGCGCTGGAGCGCCGGAAACCTATACTCGACCCGTGCGCTGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGTCGAGCCAACACTTTCGAGAAGCTTGCTAAGATTGGACAAGGGACCTATAGTAACGTGTATAAGGCTAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCGGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTTTATATTTAGTGTTTGAGTATATGGAGCATGATCTCGCAGGGCTTGCGGCTGGCCAAGGGGTCAAGTTCACTGAACCTCAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAACCTGCTTATAGACAATGAAGGAATCCTTAGAATTGCAGATTTTGGACTGGCAACTTTTTTTGATCCCAAGATAAAACAGGCAATGACAAGTAGAGTGGTGACCCTTTGGTATCGTCCTCCCGAGCTTCTTCTTGGAGCTACATTATATGGTGTGGGTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTTCTGGAAAGCCAATAATGCCTGGCCGAACAGAGGTTGAACAGCTCCACAAAATATTTAAGTTGTGTGGCTCTCCGTCCGAGGAATATTGGAGGAAGTATAAATTGCCAAATGCTACAATCTTTAAGCCTCAGCAGCCATATAAAAGTTGCATCTCAGAAACATTCAAAGACTTTCGTCCATCTTCTCTACCTCTAATTGAAACTCTTCTTGCAATAGATCCTGATGACCGTGGAACTGCCTCAGGAGCACTGAATAGTGAATTCTTTACCACAGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAGCTGAGAGATGAAGAAGCAAGAAGGCAAAAGGCTCTAAGTGGAAAAGCTAGTACAGTTGATGGTGTCAAAAGAGGCAGAGCACGCGAGCGTGGTCGGGCCGTTCCTGCCCCTGAAGCAAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTAACGCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCCCCTCCTCATCAAGATGGAGCAGTTGGATATCTACAGGATGCATCAAATAAAGGGCCAGTTTCGCTTGGCCCCGACACCTCGTTTTCCTCAGGGATATTTAATTCAAAACCTTCTGGACCCGTTAGAAGTCATGCTGGTGCAGGACATCACAGAGGCAGGAAAGCCAAAAAAGAAGAGTCCCAGATGGCGTCATCATGGAAATTCATTCGTCCATTCAAGCCATCAACAGTTGGACTTTCTATGGATTTGTTATTTAGGAGCAAATAA


Promoter Sequence:
>Vu_09454::LG2:23494689-23496689(-)
GAAAATGAGAGATAAAATGGAGTTTTTGAATCTTTTAACTTTTCTCATGTCATCAATAATTCAACCTTTACTTTTGAAATTTTTTACTCTATTGTTACTTATTATTGTTTTAAACTCCTCAATAGATTTTGAAAAATTATACTTTGATTTATTGTTGCCTAACAAGTTACACATAAATCAGGATGTACAAAAACAGTTTTGTGAAGTAGGCCTTATTACTCTTAAAGAAAATCATTTTAAAAATACAAAAAAGCCTTAGTCTTTTGTTCTTTACTTTAGATATGTTCTTACTTTAGTACAAAATTTATTCAAATATTGTTTGATAGTTATTATAGGTAAATCTTTGATCTAGTAGGAGATAAAAAGTTAAAGTTACGGTTCTTTAGATATCTTTTCAATTTGAGGATAAATTGTTTTTTAAAAAAAAGAGTATGATGGAAACCAATAACAGAACTACAACATGGGTAATTACAAAGACCCCATCCTTTTTCTTGATTGTAAATATATGATTAGGAAAACTATACTTTGTATAGGATTATTTGTAATAATGTTTTGTGTGGGTGAAATTTAAGAAAAGTAATTTCACTTTACTTAATTTTTTTTACTTTTATTATTTTTTTTTTGTTTTTTAATACTTAAAATTTATTTTATTAATAAATATGTTATTAATAAATATAATTTTCTATTACATTATTATTAAGGATATTTATTAATTTTTATTTTCTATCAATTAATTTTTTTTATCTTCGATCAAATCCTATTCAAATTTTATTTTCAAATCCACTTTCAATCACCTCAAAATCTATTAAAAAAAATATACAATCTACTCTTAAATTCATCCAATTTCTTTTTCTCAAATCACCACTCTAAAGTGAAAGATGTTAATATCATACACTAAAAATATCATACATTAAAGTAACCATTATTAATGTAATTTAAACCCCCTTTTTGCTCTCACACTCACAAAAACGAAACATTACTGCCTTTTATGCACTCATTTTTTTTCAAGTCAGTGAGATAAAATTTAAGGAGGTTGTAATAAACATATTGATATTATTGAAGAAAAGTATAAATAGTTCTAGAATGGTTACTTCTTCAAACAAATGATAATATGTCATTAGACATATCAGTTATCTTTTACTAGAAATCTTAAATACATTTATTAACATCATACATCTCACTGTATGATTTATTTTTTCTAGCTATAATATTGACTCATAATATTGTCTAAGAAGTAACAAAAATAAAGAGAAAGTGCATAGTGATTAGTTCCCCGAGAAGTGGTAGGCAGTGACATGTGTTCGTGTAGTCTTGTTCAGCAAATTAAAATAGTCCCTCTAGAAGCGTCAATGTGAACTGAAAATGTCAAAAACAATGGAAACCTTTCAAAACATGGCTTTAACATTCCATTACTATTATTATTATTATTATTATTTCATTTATTGACTAATTCATAATTTTATTTTAACTTTCACTTGACCCGGTGACCAAATATTAAAATGTAAAAGTTTTGAACTCTCACTCTAAATATAGTTTCTGGGTTAGGTGTAATGAATGCAGGGGCACAATTTATTATGTTGGGCAGGGTGGGTGGAAGTAAACTTCATTTGTCAGAAGATTTGACAAAAAATTTCAATTTGAGAATTGAATTGAAGCCAATAACTTCATCATACATTGGTTGAAAGCAATTAAATCATTGCACCTAAAATCTGAATTGGGAATTCAGATCAATTCAAACCTGGCAATAACTGGTCCCAACCGGAAAGTCAAATAATGAGAATTGCAAAAAAAAAAATATAGTGAAATGAAAAAGATAATAACAGCGGAACTTGTTTTCCACGGAACAGAAAGGCAAAAATTTCTTCCCCTTTTACTTTTATGGCAGCTCCTTGACCTTTTCGGTCTCAAATAAGTGACGTCACAAAGATGTGTCGTTTTGGACTTTCTGCCTCTTCCTTCCATAGCCACCATTTAACTGACAATACCAGCTCAGACTTTCA


Gene Sequence:
>Vu_09454(-)
GACGCAGTGGCATTTCCGTTATTTACCCACGCGCTGTGTCGTTTATTCAACCTGCATGCGTTCCACACAATCAATCCCCTTCCCCTGCACCCTATTCACTTCTCCTTCATCACACTCGCAACAACACATACATCTACGGAAAACTCTTCAACCCAGCTTAAACCTTCTTCACCGTTTCCCTCTTCGCTCTTGACAGAAACCGCCGTCGCTCGCCGCCAATCATCACGAGGATTGCGGTTGCTTAGTTTTTTGTTTGCTTTTTTTCCTTCATTCCATGCGTTTTCCGTGTTCTGCCGCCGCCGTAAGCTGCCTCGCGTGAGGGATGGGTTGCGTGCTCGGGACGCCGGCGCGTGCCGGAGTTCAGCGCCGTCGCCGGAGGGAGCAGCGGGAAGTTGCTACCGGAGAAGTTAATAATGCCGTTAGGGTTCGAGATAAGGAAAGGCACCTGCATACCGGCGATTTTCCGGGGACTCTTCCGGCGCTGGAGCGCCGGAAACCTATACTCGACCCGTGCGCTGTCACGCAGCAGGGATGGCCGTCGTGGTTGATGGCCGTCGCCGGCGAAGCAATCGGCGATTGGACTCCTCGTCGAGCCAACACTTTCGAGAAGCTTGCTAAGGTTTTTAGAAACTCTTACTTTTTAATTTTCTCTTTTCGTGAAGTATTTTTCTTTTTGTTTTATTAGTTAATAAAAAAATGAAAAATGGATCTATTTTAGTAAATGTTGTTTTTTGTGTTGTTTCCTATGATCGTGTTGTTCAGATTGGACAAGGGACCTATAGTAACGTGTATAAGGCTAGGGACCTTGTTACGGGGAAGATTGTGGCATTGAAGAAAGTGAGATTTGATAATTTGGAGCCGGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTTTATATTTAGTGTTTGAGTATATGGAGCATGATCTCGCAGGGCTTGCGGCTGGCCAAGGGGTCAAGTTCACTGAACCTCAGGTACCACAATTTTAAGCAGCCGTGTGCTACTTGTTAAATGAATTTTTGCGAGTGCTTTTGTTTTCATAAAAATTGGGCATGGGAGATGTAACTGGGTTTGAGACCTTGGGTACTGTTGATTTTGATTTGAGCTTTGTTCGAGACATGGCTTTTTGCTTGGCCTTTCTGTGGTTTAAAAGGAAAAGTTGGGTTTTTATCTTTCTCCTAGAGCTTTGTAGGCGATGTTGGGTATCGTGTACAATTTTAAGCATGTTTGCTTTCTTGTTTTCACCCTTCTTTGATGTCGGTGTTTTTGAAAATTCATTTATTATATCTCTCTATGAAGTAAATGTATTGTTTAATTAGGAGTAATTTTGCTTTCCATCCAATGAGAAAGCAAGTCTACCGTTAAATTTGTACATGTTGAGAAGGGTCTGGTTGATTATTTTGCTATTGTGGAGACATTATAATATTTATTTGAAGTCTACCCCTAGTTTAAATGGAAAACAAAGGTTTGGTGTTACATAAGGCGCGTTAATTAACAGTTAAAGTTGCTAACTGTTGCAATGTGAATGTTAAATCATTAAAGGGTACTTCTGGATTCATGGTGATTGTCGCATTTAGTACTTGGTGGAGTTGTATGAAGCAATGATTCTTTTTTAATTTCTGACGAACTAGGAGGAGGATAGACTCATTCATATTAAAAAGCAAAAGGAAAACTCTTACTGAAAGGCTGATTTGTCTCTCAGTATATTCTCTATGACAGGTTAAATGCTTTATGAAGCAATTACTCTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTGTTGCACCGTGATATCAAGGGTTCCAACCTGCTTATAGACAATGAAGGAATCCTTAGAATTGCAGATTTTGGACTGGCAACTTTTTTTGATCCCAAGATAAAACAGGCAATGACAAGTAGAGTGGTGACCCTTTGGTATCGTCCTCCCGAGCTTCTTCTTGGAGCTACATTATATGGTGTGGGTATTGACCTTTGGAGTGCTGGCTGCATCTTGGCAGAGCTGCTTTCTGGAAAGCCAATAATGCCTGGCCGAACAGAGGTATTGCTCTTCAACTTGTTTACAGGTTCTGTTCTCTAAACTTCAGATTTTTGTATACTCATTGCGATGCTTCTAATCTGTTTATAAATATTTTAAGTACCCACCAGTAGTTTGTAATCCATCTTGCTCCTTTCCCAGAGTCGCTTTTGAGGCTTTGTGTACAGGAAGCATCTTTCTTTACTGGAAAATTTATTGGGAAGTTCTCTTAGACACACCCAAGTTGGAGAAAGATAGAGGGTTTGCGTTTGACAGTGTCATCAACTTTTAGCTTGTTTGGTGATGGCAGTAATCTACCATCTTGATGGAGCAGATATAGAATATCAACTAAAATGCAAAATCTGTCTTAAAGACAAAAGCTAAATGAAAGGGAAACTATCAGAAAATGAGAACCGTTTAGTAATTTAGTTTATCATCTGAAAGTACAGAGTATTTAGTTTATATCCTGTGTGAAAATTGTACCCTTTACATTATAGCACTAATGTTTGAAGTTGATTCATCCTATTTCACTTTCACTGTCTGTATCTTTTTGTGTGTCCCAACATCCTTTTTTTTCATGGCTTTTGAAATGAGCATGTTCAGGATGATTCATGACTGAATTTTGAGTTGCTTGGGGTTAGGTTGAACAGCTCCACAAAATATTTAAGTTGTGTGGCTCTCCGTCCGAGGAATATTGGAGGAAGTATAAATTGCCAAATGCTACAATCTTTAAGCCTCAGCAGCCATATAAAAGTTGCATCTCAGAAACATTCAAAGACTTTCGTCCATCTTCTCTACCTCTAATTGAAACTCTTCTTGCAATAGATCCTGATGACCGTGGAACTGCCTCAGGAGCACTGAATAGTGAAGTGAGTGATCACTGTATATTTATTAACCTTGCATTCATGATGTAATAAATTTCATATGTTTTGTATCTGCAGTTCTTTACCACAGAGCCCTATGCTTGTGAACCATCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTGGATGTAAAGCTGAGAGATGAAGAAGCAAGAAGGTTCCCTTCTGCTCTTCTCATGTTTCATAATTAACTTCTCAACTGTTTTGGTCCAGTTTTTCACTTATGATTTTCGTTTCTTCCTCAGGCAAAAGGCTCTAAGTGGAAAAGCTAGTACAGTTGATGGTGTCAAAAGAGGCAGAGCACGCGAGCGTGGTCGGGCCGTTCCTGCCCCTGAAGCAAATGCAGAGATCCAAACAAACTTAGATGTAAGTCAGACGCGTAGTTGTGTTTGATATCCTCTTGGCCTCACTTGGTTTTGCTGTGTTTGTTTTAATATTTTATTCCTTCATACCAAGTTCGTGCTTGTGTGTTGTACGCATCCGTGAATAGTTGAAATATCATAGGTACTCTACTCTTGGATTAATGACTTTTTTTACGCCCGAGCTTCCTCTATTTTTACTTTGCATACTAAAGCTGACATAATATTTTCAAGAAACCTTGATTTTTGCGGTTGGTTATATTTACAATTTGTAATGCAGTCTGGAACTTAACAATCGAGTCGTAGATTCTTAAGCATTTTCTTACTTAGGATTCTTTGATCATGTCTACCCTTTCATTTAAAATGTTTTTGGTGATCATATTTTATATTCCTTGAGAACATGGAACTTTGTGAAACTTTTGTTTGATTCGATGATAGCATGGTAAATTGAGCTTTTCACTTAGTGTCTTATATGCTCCCTTGAGCACCATTAAATGTGTTTCTCACTGAATTTCAGAGGTGGAGAGTTGTAACGCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCCCCTCCTCATCAAGATGGAGCAGTTGGATATCTACAGGATGCATCAAATAAAGGGCCAGTTTCGCTTGGCCCCGACACCTCGTTTTCCTCAGGGATATTTAATTCAAAACCTTCTGGACCCGTTAGAAGTCATGCTGGTGCAGGACATCACAGAGGCAGGAAAGCCAAAAAAGAAGAGTCCCAGATGGCGTCATCATGGAAATTCATTCGTCCATTCAAGCCATCAACAGTTGGACTTTCTATGGATTTGTTATTTAGGAGCAAATAATGAGTTCCTTTTGATTTTGGCATCCTGGAGTGAGGATAGCAATGATTTAGGCCACCATACATTTTTTTTGCTTATCGCTATGGTTTTCAATTGTTTTTTCGCGTCGCTCCTATTTTTTCTTTTTGTATTTCATCTGGCATAAAGTTGTTGTATAATCAACATTACAACGGGGATCCCTACATTTGTATATTTAGAGGATTAAATTCTCTGTTGTACAGTTTCTGGGGAGGACTTCTTCAGGTCCTTTCGAAATGTTTCGACTTAGCGTAGCTTGTAAATTATTTTTAAACAAGTACTCAAATTTCCGTC