Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_09390	LG2	22370493	22371155	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	22370577	missense_variant	p.Ile29Val
G/T	22370712	stop_gained	p.Glu74*
T/A	22370929	missense_variant	p.Met146Lys
G/T	22370930	missense_variant	p.Met146Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_09390.1

MDTNLNTTFTNVNTTYNHETMTTDQQHNIILHDHHQIPMDVGIWSNHHHPFHPQPSSSSSTNFLTDVLGIQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSTPHIHSVNATASNSDCPFPPTTLHASTSVNLPLGIQFNADHLQHSSGNY*

CDS Sequence:
>Vu_09390.1

ATGGATACCAACCTCAACACTACATTCACAAACGTTAACACCACTTACAATCACGAGACCATGACCACAGATCAACAACACAACATCATCCTCCACGATCATCACCAAATTCCAATGGATGTTGGAATTTGGTCCAATCACCACCACCCTTTTCACCCACAACCCTCTTCCTCCTCTTCAACTAATTTCCTAACCGACGTCTTGGGAATCCAGTTTGAAGAAGATGAAGAGGAAGAGCTCGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCGATGCAACCGGTCGACATAGACCCTGCCACCGTCAGAAAACCCAAGAGGCGAAACGTCCGCATAAGTGATGACCCTCAGAGTGTGGCTGCACGTCATCGAAGAGAAAAGATCAGTGAGAAAATCCGTATCCTTCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTCCTTCAATCAACACCACACATTCACTCCGTTAATGCCACTGCTTCCAACTCCGATTGCCCTTTTCCACCAACTACATTGCACGCTTCCACCTCCGTCAACCTGCCTCTTGGAATCCAATTCAACGCCGACCACCTTCAACATTCATCGGGTAATTACTGA

Promoter Sequence:
>Vu_09390::LG2:22368493-22370493(+)

GCATACATTGAACAAAGTCAGAACACATTCTTCTTAGCTTTTATAGTTCATCAATGAAAATGACAACTTACCTCGACAGTAGCCCCTTCAATAGCCTCTGAAGCGGTAGTGGAAGACCTTCTCACAGAGCGACACTCCCCTGGTTGCGCCGCCTCGTCTACGCCGCCTCCTCCAATATCTTCCCTCCACAATGGTAGCCTTCAACTGAACCACCCACCACCTTCCTCAGCTCAGAACACTGCAAAACGCTACAAGAAGAAAGGTTCCACCACTGACGCCTTCTCGAAAACAGTAACAGGAAAAGAAAATGAGATGGGAGAATGGGAGACTTCACCTATAATGGAGGACTGGGGAAGAATCGTATCCCAATGATGGTTAGGGTGGGAAGCAGTCTGCACACGCGACACACTCAGTTCGTCGAGGGAGGAAGGGCACAGAATCTCAATATTGGGGAAGAAGGGGTTTTCGCGAAATGAGGGGAGGGAAATATTTCACTTTCTAATTTCATATACATCATTCACTTACCGACGGTCATTTACCTTCGGTAATCACTCCTGTGCATTACAGACGGCCATTACCCTTTGGTAAAGTGATACTACACAAGCCTTCGAAAAAGCCTTCGGTAAAATACATTTACCGAAGGCCACAAGGCCTTCGGTAATTACCCCTCGGAAATAATTATTTTTCCAGTAGTGATTCAGAGGATATATATATATATATATATATATATATATATATATATATATATATATTTATTTATTTGTAATTAGATTTAATTATTCTTATAGTTCCTATTTTTTTGATTTTTTACAAATAAGTCTCTCATTTTTTTTAATTGGGTTTCTTTTGAAAAATTGCCGTAATTAAATTTTTGTTGTTAGTTGCATACTAACATTGTTAGGAGATGGTCATCGTGATATTTTTTAATTATATTTTACCTTTTACTTTTTTTAAATAAAAAAATATATATCCACTTGTCAAGCTAACAATGAGCCATGTGTCATTAACAATGTCATTTGTCATTTCAAGCTACAATGTCGTTGTATTTGTCTCAATTTAATCCTTAATTTTTTAAAAATTAAACAATTTTCTTCTCCAAATTCAAACAAAATTTTATTTATATATAAATCTTTACAAAAAAAGATTATACAAATTGATATTTTTTATTAGAAAATAAAAAAATTACGAACTAACATTTGACACATTTTTATTTATGTAGTACTAAGAAAATAACTTAGCTGCATTAAAATTTTTAAAACAAAAATTAAATTTAGACAAAAAAATAAAGAAAGTCATTTAAAAAATTTTCACAAAATTAAATCACAAATGAAATCATTTAATCTAAATAATATAATTGAGCAAACTATAAAAGTTAATATTTCAATAATAAATACTTTTGTGAATGTCATTTAAACAAAAATAGTCTTAATACTTTCTCAACAATGCCATGACACGTGGTCTGTCACTGACACATGACATGTCAGTGCCACCTCATATTGTCATTGTCACGTGACACAATGTCAGCTTGATACGTGACAATTTTTTTATTTAAAAAATTCAAAAATATTACGAGCTAACACATGACACCTGTTTAAGAGTGTTAGTAGAGAACTAACAACAATGACCATATTGTTTCAATTTATTTAAATTAAGGATCCAATTAGAAAAAATAAAAGACCTAGAAAAGTTACTGAAAGAACGAGAAAGATTAAACCTTATTATTATTATTATCACTTATCTCTCTTCTTTGTGCAGCCTCTTTGATAGCATTGTATGGTGTGAATTTGGGAAGAAAAAAGAAGAAGCTAGCAAGTTAACTCATTAACTACGAAGCTTGATTGTTACAAACAGCTAGCACCCTTTTATGCGGCGAGATATCGTTAGGTTATTTATAACTACTGTACTTTTCTACCCATTTTCTCAATCCTTTTTAAACCCTTTTAGACTTTTACTCCTCTTAACCTTAAAAACACCAACACAACACATTGTGCATGCCCACA

Gene Sequence:

>Vu_09390(+)