Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09355 LG2 21743760 21746640 "PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 21743886 missense_variant p.Val243Ile
G/T 21743910 missense_variant p.His235Asn
T/A 21743990 intron_variant
T/A 21744035 intron_variant
T/A 21744118 intron_variant
A/T 21744123 intron_variant
G/T 21744127 intron_variant
G/T 21744135 intron_variant
T/C 21744136 intron_variant
G/T 21744137 intron_variant
G/A 21744151 intron_variant
T/A 21744191 intron_variant
G/A 21744192 intron_variant
T/G 21744210 intron_variant
T/A 21744332 intron_variant
A/T 21744619 intron_variant
G/A 21744625 intron_variant
G/C 21744760 intron_variant
G/A 21744827 intron_variant
G/A 21744929 intron_variant
G/A 21744949 intron_variant
T/C 21744950 intron_variant
A/T 21744977 intron_variant
A/G 21744995 intron_variant
C/T 21745026 intron_variant
A/G 21745041 intron_variant
C/A 21745107 intron_variant
A/G 21745275 intron_variant
T/C 21745293 splice_region_variant&intron_variant
T/G 21745295 splice_region_variant&intron_variant
C/T 21745297 splice_donor_variant&intron_variant
G/A 21745310 stop_gained p.Gln219*
A/G 21745313 missense_variant p.Ser218Pro
A/T 21745324 missense_variant p.Leu214His
G/A 21745340 synonymous_variant p.Leu209Leu
A/G 21745343 synonymous_variant p.Leu208Leu
G/A 21745348 missense_variant p.Ala206Val
G/A 21745351 missense_variant p.Thr205Ile
C/G 21745360 missense_variant p.Gly202Ala
C/T 21745362 synonymous_variant p.Glu201Glu
T/C 21745368 synonymous_variant p.Gln199Gln
C/T 21745851 intron_variant
G/A 21745896 missense_variant p.Pro132Leu
G/T 21745918 missense_variant p.Gln125Lys
T/C 21745944 missense_variant p.His116Arg
A/G 21746016 missense_variant p.Leu92Pro
G/T 21746046 missense_variant p.Ser82Tyr
G/A 21746151 missense_variant p.Pro47Leu
G/A 21746152 missense_variant p.Pro47Ser
T/G 21746184 missense_variant p.His36Pro
A/G 21746329 intron_variant
G/A 21746330 intron_variant
C/T 21746332 intron_variant
C/T 21746390 intron_variant
G/A 21746530 intron_variant
G/T 21746572 synonymous_variant p.Val23Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09355.1
MFSSSSSAPADSSVASNLSFIVVAPSLFLRLRPQSPWLHPRLEPSHPATPTPPPIATQSDPSNPGPIRTTTEHDLAPPLDTISLRHQTRSRSAPSVELASLPCSRLSLSSTTRTRTCPLRCPSPTSSFRHTSDPGITNTIDNIVQFFLLGLYLEDVKLAKKYQSNLLVDGVRLSNWEMKLVGKEADRDLYDIVLAICASQKEGNATARLLTRLDLASSSQKKKIHGNMLEGVIPKTIGNLSKDLSVLNIGQKLLNISYNLISGEIPQELSQLADLQELSLVGNEI*


CDS Sequence:
>Vu_09355.1
ATGTTCTCTTCTTCTTCCTCTGCTCCCGCAGACTCCTCCGTTGCATCCAACCTCTCCTTCATCGTCGTCGCTCCAAGCCTATTCCTCCGTCTCCGCCCCCAAAGCCCATGGTTGCATCCTCGTCTTGAGCCGTCCCACCCCGCAACCCCAACCCCACCACCAATCGCCACCCAATCCGATCCATCAAACCCAGGACCAATCAGAACCACCACCGAACACGATCTCGCTCCGCCGTTGGACACGATCTCGCTTCGCCACCAGACGCGATCTCGCTCTGCCCCCTCGGTCGAACTGGCATCGCTTCCTTGCTCTCGTCTCTCCCTGTCATCAACCACGAGAACAAGGACATGCCCTCTCCGCTGCCCAAGTCCGACAAGTTCGTTCCGCCACACCTCCGACCCGGGCATCACCAACACGATTGACAATATTGTTCAATTTTTCTTACTTGGACTGTATCTAGAAGATGTTAAGCTTGCCAAAAAGTATCAATCCAATCTACTGGTCGATGGAGTGCGGTTATCCAATTGGGAGATGAAGCTTGTGGGTAAGGAAGCTGATCGAGATCTTTATGACATTGTTCTTGCCATTTGTGCTTCACAAAAAGAGGGCAATGCCACAGCAAGGTTGCTGACAAGGTTGGACCTTGCGAGCTCGTCGCAGAAGAAGAAAATTCATGGAAATATGCTGGAAGGTGTGATTCCTAAAACCATTGGCAATCTCTCCAAGGACCTGTCAGTGTTAAACATAGGACAAAAGTTGTTAAACATAAGCTACAATTTAATCTCTGGAGAAATCCCACAGGAGTTAAGCCAGTTAGCGGATCTACAAGAACTATCTCTAGTTGGAAATGAGATATAA


Promoter Sequence:
>Vu_09355::LG2:21746640-21748640(-)
TTTTTTTGGTGTTCAAGTTTTCCTTATGACTACTCGAGAATGAAATATATTGATGTTCCTTCCAATTTCTTAAACATCTGATTGTCTATGACTATTTTGTTTAATGTTGTTTGTTAAACCTCAAAACCAGAGATGCTTTAGACGATCTAGTCCCATCTCTAGACGATCTTGTCTCAACATTGATAAAATATGTCATTTGAATTTTTATTTTATTTTGACACCTTGTTTTTTTTATAAATGAGTATAAACATGTAATTTAGTAATTTTTTTTAGTTTTCCAAATTATATATTATTTGTAATTTTTTAATTTTTTAGAGAATCTATCATTGAGTTGTTGTTTTCCATTTTTTTTATTTGGACAAATTAGTGCTAAGCAAAGTAAGTTTAATTTTCATCTCACTTTTTCATGTTTGGCTTATCAAGAAATTAACATCTTTAAAAACTTAAACTACCTATAATTGAAGTAAGATGACATTCACAAAAAGTTGGTATCAAATATTCAAGTGAATTAACAAACTTAAGAACAAAGTGCACTTTGTTATGTTTGGTTAAAAAAAATGTGACCATTGTTTAATTAGATGCTAAGAATTACCAAGAAAAGTCAAATTTTGGTTATTTTATCACATTGAGTTTCTTGTTTCCTTTATGAGGCAAAAACACTAAAATGGTGTAATTTTGATTTCAAAATTATGTAATTTGAAAGTCATATGAATTTGGTACGATTTTATTTTGAAGAAGTTGTATAGATTTGGTATGATTTTAATTCATTATAATTGTTTTAAAATTTTAATTGAAGTTGTGTCAACTTCGTATAATTTTAATATATTGTGATATAAATTGAAGTCGTGTTAGCTTCATATGACTTCAATTCATTGTAATTATTTTTTTAATTTTAATTGAAGTCAAGCTAGTATGTTTGACTTTAGTGTAATAAAGTCATACCAATTTGGCTCAACTTCAAAATGATACTATTTTGGTAATTTTGAAGACAAAATTACACCATTTAGGTGTTTTTGCCCCTTTATGTCTTTGTTATTTTGTTGATATAAATGGCTAATGCAATTCCATATATTTAGGAAGATTTTTCATTTACTTGTCACATTTGCTTCTTCCTTTATTATTAAAATCGTTAATTATAACTAGACATTCCTTTCATATCATTTGTCATTAATTCCATCTTAACATCTCATGTTTCTGATAAAGTTTCCATTTATATATAGTTAGTTACACTTTCATTGTTTTGAGGTTTTTATTCCTTGTTTGTTCATCTTTATTCTAAACATGAACTTCTTATTGGTTCTTATAGTTTTGTGTTTTTTGTTGAAATAAAAATTATTTCATACCAATGCTTATAGAAAAAGGAATGGTTAGTATAACAAAACATCGTATCAATGAAATAAGAAGTAAATGCTTTGGAAATGGATGTATTTTTATTGATGTAATTTCTATAAAACATGATAGGCTCAAGTAATTTTTCCACCTTTATGAAAAACTCAAACCACAAGCTTTCTACATGATTTGCATTCTTTAACTCCTACTTTTTTTGGAAGATGTATTATTTTGATGTTTCATGGTGTTTTCTTCCTAGGAGATTTCTTTTCCAAGCTCTTAGAGACCATCAATATCGTTAAAGCATCAAACAACTAATGGATACTCTTATCGACATTCACACTAGTGCAAAACGCGGAAAAGAACGCCGTTAATACGTCTCGGTTTTCAGAAAACCGAAGTATATGTAAAGGCAGTGGCATTTTTGCAATTTAAATGAACTTATAGGCCTCGGTTCCCCTTGAACCAAGGCATAAAAGCCAAATTACCTCGGTTAATGGTCAAACCGAGGCGTAATACTTTTTGAAATTGACCTACACCATCGGTTCAATTAGACCTGAGGCAGTAGAGCGAAGTTGGAAAGCGATTTCTAGCACCCTAGACAGTAGAGTAAGTATAGGCAGTAGCAGTCTTTTATCTTCAACCCGCGAAGGAAATTACCCTAATTTGTA


Gene Sequence:
>Vu_09355(-)
ATGTTCTCTTCTTCTTCCTCTGCTCCCGCAGACTCCTCCGTTGCATCCAACCTCTCCTTCATCGTCGTCGCTCCGTTATCGCCACTTCTACAAGGTCACCGCTTCGTTGCCGCCGAGAGCCACCACCACCTCGTCGTGTGCCCTTTCTTAGATCTACATTGCTTCAGCTGTTATCCCCTTTCTTCCTTTGTTTTGGTTTGTCAGATCATCTAGTGCTACAGCTAGACCGTTTGGCTCTGCTTCGGAGGCCGAGGACGACAGCGTCGACGAGAATGCGCTGCTGTTGCCCTTGGCGATTTTCAAAGACTGACTAGCGTGCGGTTGGGTGAAGAGATTGATTCAGGAGCAAGATGGTGTGGTGACCAAGTTTTTGATCTGTTGCATTTCCATTTTATTTTCATTTTCGTCTATTGCATCTCGCAGAAGCCTATTCCTCCGTCTCCGCCCCCAAAGCCCATGGTTGCATCCTCGTCTTGAGCCGTCCCACCCCGCAACCCCAACCCCACCACCAATCGCCACCCAATCCGATCCATCAAACCCAGGACCAATCAGAACCACCACCGAACACGATCTCGCTCCGCCGTTGGACACGATCTCGCTTCGCCACCAGACGCGATCTCGCTCTGCCCCCTCGGTCGAACTGGCATCGCTTCCTTGCTCTCGTCTCTCCCTGTCATCAACCACGAGAACAAGGACATGCCCTCTCCGCTGCCCAAGTCCGACAAGTTCGTTCCGCCACACCTCCGACCCGGGTTCGTGCCCCGGGAGGAGACCCACCTGGTCGGGTTCGTTTTTTTTTATCAATTGTTTTGGGTTTGATCATTGTCATTTTGTGGTTGTAGGCATCACCAACACGATTGACAATATTGTTCAATTTTTCTTACTTGGACTGTGTATGAATGATTGGATTATTACGTGCTTTGCTGGATTATAATTTTCCTTGGCCTTTTCAGAGTTTTGATGAAGGTGATTAGAAGAAAAGGAAAGCATATTCTCCTTAAATTAAAGATTATATGTGTTAGATCTAGAAGATGTTAAGCTTGCCAAAAAGTATCAATCCAATCTACTGGTCGATGGAGTGCGGTTATCCAATTGGGTAATACAAGATGGCAGCCCATCACTATATGGAGTGGTTCATGAAAGGCTCCTTGCTATGTACATTTGTGCTAGTCATGGAATTGAGGCAGAGAGACAATTGTAGGAGATGAAGCTTGTGGGTAAGGAAGCTGATCGAGATCTTTATGACATTGTTCTTGCCATTTGTGCTTCACAAAAAGAGGGCAATGCCACAGCAAGGTTGCTGACAAGGTTGGACCTTGCGAGCTCGTCGCAGAAGAAGAAAAGTATATCATGGTTGTTATTTCATTAGATCCGAAATAAAATTTATGGGATCCATTCAGTTGGTCACCGCAAGGTTACACTAAATTACATAGATAACAATCTTCCCAAACTGATGATGACATTTTCTACATATACAGAGAATAATTTTCGTGATGAGTCGTGATAGTCTAGGAGGATGTCTTTTGCATCTTGGTGAGTTGTCTGATGTCTTGATTGAAAAGATTATCCCTTGTTTCTTTTGTTTGAAGAAGTTGGCAATAGAGACTGACATGAGAATGCTTGAGTTGGGATTCTATCCGGAGTATTTGGACAAGGTTGTTGTTTTACAAGGTTTGAGGAAAAGGATCCAACAATATAGAAAACGGTTCAACAGTTTTCATTCTCATTCATTTAATATATCTGCTTAGCTTGTCACAATAGAATCTTTTTTTTATTGAATTTTCTGAGATACTACCTCGGTTCAAAAGAGAACCGAGGCAAAAAGTCCTTTAAAAAAAAGGGGGCAAAATCCTACTGCCTCGGTTACTTTTGAACCGAGGCAAAATCCTACCCCTTTTTGCCTCGGTTCTACCCCTTTTGCCTCGGTCCACAACCGAGGAAAAAAGGGGTAGACTTTTTGCCTCGATTGTATATGCCTCGATTCCAAAACCGCTGCCTATGGACGAAAACAACCGCTGTCGTTTCTCTTGACTGCACTAGTGTCATTATAAACATTCATATCATTTCATCAAATGGTTTGTCTTCTAATATTTTATGGTGCCTTCACGGATGAGACCAATAGTAGTATACATTTATTTGCAATTTTGTATACAAAAAATTTGTTAAATTCATTTGCGAACAAGGAGTAAGTAATAAGGTGCTCCTCACCTTAACGTTAAATTGTGCATTGCTAATTTTCTTTTGAATCCCCTATGACTCTAAAATGGATTTTTCATTTTATATTTTGGGTTCAAAATCTTCTCTTATTACAACTTGTCAAAGATTATATTGAATAATTTTAATAAATATATATATTTTGCTCAATCATTTATAAAGAAGGTTTAATCTCACCAGAAGTCCCTATTTTTGTCCAAAATTCTAAATAGGTCCATTTTCTTTTTGGCGTATCAATTGGGTCCCTATTATTGTAAATTTGATTCAATTAGAGGCCTGTCGTCAAATTCACCAAACGGCCGTTTAATATTTGGTAACGTGGCATGTGGTATTAAAATTGAGTTTTGTTTTAAAAAAATTTTACGGACAGAGGTGATATCAGATTGAGGGAAGGGCAAAGGTGGAAAGATAAAAAAATTCATGGAAATATGCTGGAAGGTGTGATTCCTAAAACAGTACTCGACTCAAGTTTCTGGCAGTTCATGGAAATATGCTGGAAGGTGTGATTCCTAAAACCATTGGCAATCTCTCCAAGGACCTGTCAGTGTTAAACATAGGACAAAAGTTGTTAAACATAAGCTACAATTTAATCTCTGGAGAAATCCCACAGGAGTTAAGCCAGTTAGCGGATCTACAAGAACTATCTCTAGTTGGAAATGAGATATAA