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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09312 LG2 20319327 20320175 PREDICTED: NAC domain-containing protein 104-like
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 20319456 synonymous_variant p.Tyr134Tyr
A/T 20319927 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09312.1
MEDARFNLPPGFFFSPTDEELVLHFLYCKTSLIPCHPNIIPDLDSRLHPWELNAENGCWKEIGVTEPIFSTFDKKVGTKKYLVFHIGEAPHVTETSWVMQEYNICSSGFDTASYRSSRRRKHDQSWSQWVLCRVYEKMRSEGVNCYSDDDESGSELSWLDEVYLSLDDDLDEIGMPN*


CDS Sequence:
>Vu_09312.1
ATGGAAGATGCAAGATTCAACCTTCCTCCTGGTTTTTTCTTCTCTCCAACTGATGAAGAACTTGTTCTTCACTTTCTCTATTGCAAGACTTCTCTTATTCCATGCCATCCCAACATCATTCCAGACCTCGATTCTCGCCTTCATCCTTGGGAACTAAATGCGGAAAATGGGTGTTGGAAGGAAATAGGTGTGACGGAACCTATATTTTCAACTTTTGACAAGAAAGTGGGAACGAAGAAGTACTTAGTATTCCACATTGGTGAAGCTCCACATGTTACTGAAACCAGCTGGGTAATGCAAGAATATAATATATGTTCTTCTGGGTTTGACACTGCGTCCTATAGAAGTTCTAGGAGACGAAAACATGATCAAAGTTGGAGCCAGTGGGTTTTGTGCAGAGTGTACGAGAAGATGAGGTCTGAAGGTGTAAACTGCTATAGCGATGACGATGAGAGTGGATCAGAGCTTTCATGGTTAGATGAAGTTTATCTGTCGTTGGATGATGATCTTGATGAAATTGGCATGCCAAATTAG


Promoter Sequence:
>Vu_09312::LG2:20320175-20322175(-)
AACAAACCTTGAAGTTATAATTTGAAATTAATGCTTAGAAAGTTTAGAATTGGAGTTTTCGCATAGTATATACAACTCCGTAAGAAGATATTAAAAAATAATGTCGAGTAAATGAAAAAATATTTTGGATGTAAAAATATTTAGCTTATAATTTTCATGACGGCAGAAAGTTGACGGATGAGTAAATATTTATCTACAGTAAAAGGAGAATGTGAAATCAGCTGTGCGTAAGAAAAAGCACGTATCTGGCAACTGGCATGTCAAAAGGCGACAGAGAGGCATGTAGAAGGTTACTGTTGACGTGTTTTTGCTCCCACGTTGAAAGGTTCTTTTGCACTAGCAAACGAAATTCCACTAATATTCTCCACTTTGTATGGTTTTTATGCATGGTTTTCAAGGTCCACGAAGATATCCAAGGATAAGGTTGAAGTGGCACTGCCCCAATCATAACAAAAAAGCTAGTACAAACAGTAAAAAACTTGTCTTCGATCAAACCTAGTGCTTCCTTAAAGTGACCTTCCAACCACTTCAACATCCACCACGAAACACGTATATAAACTTTATCCTTTTTTGTGAACCCTTAATCATGGCTTATCATACTAAGCCACCAAGTTATTTCTCCACTATTATTGGTTTCTTCTTTACGTAAACAACCAAGTTCCCACTCACACTCATTGTTCTTTTCTTATACTCTCCCGTTGAGTACTGCAATAACTTTATTATATATTGGTTTTGCTAAAATAAGACAGTTTTGTAAGAGATGAAGTTGTCCACATTCTTAGAATTATATGCTTCTTTTTTAGTCATAATTAAGCAGAAGAATATGATGTATGATTAAAATCTTATGCTTACACAGTTGCGGAAATAATTTAAGTAAAATCACAGAATCCAAATTTTGTCAGATCAAGTTAACCGGAACACTGTAAATACCAAATTCGTCTTTAATTCAGTAATAAAGAAATATGTAAAAAAACAGAGAGATTGGGAACAAAATACCATTTCAGAAACGTTGTTGTCTTAACTTGAACATGCACAAGAACCCAATTATGTTTACGTTGCAAATGATTGAATTAAATCACAAATGGATTCGGCTTTGGAATTAGTGATTTTTTAGGGTGTCAATTGTACGTTGTTGTAACTTTTCAGAAGCTAACTATGATGAAAGGTACGTGAGAACATATGAGCAATGACGCTTTCGTTTTGACGCGTGTTGCTGAGAAGAACCTTTTTCTCGTGTCAGTGGCCCGTCGTTCACACACTGGTGAAATTATTTTGACCACATCAGATATCAGATGTGTCTGATCTGCTACCATGATTGCTTCTACGTGGGTTTTCCTAACAGATGGCAATTTTTTTTTGTGTGAGATCGCAATCGAATTTAGTTAATGCATTGATGTCGCATCATTGAAGAAAGGAGTGCAGAAATTTAGTATGATGAATTTAGGTTTATGTGAGAAAAAAACATTATATTATATCAGATATCATTAGTTTATGTATAGAAACATTGGTGAGAAATATCACATCATATCCCATGTGTGAATCTGCATGCAGCTGCAATGATTAACGGGTGGGAAAGCGTATTGTCATGGATTATGCCAGTTAGGTTAAAGGAATAGATAATTAGATAAACGTGGAAAAATTTTAATGCACCATGCACAAAACTAGATGTGGGTCTCATGTTCCGTAATCCTTATCCTTCCTAATTAACTAACCATACACTAATTTAATCATTTAATGTTAACTTAGGTTGTAATCTTAGCTGGCTTGTTTTGTTAGCTTCCTTGGCCGGCATTCTCCTTCTTAACAGGTCCCACTTTCTAATTATGATGCTATTACACGTAGCGCCGCCTTTCTTACAGCAACTCACTCAATTTTTGAATAATAATGATAATAATAAAGTTTCTCTTTCTCTATCTCTAACTATTCTTCGCTATATATAGTGACAAATCAAAACTGAATTTTGGTGCCAAATTCCACTCTCAAATTCAACAATACAGAAG


Gene Sequence:
>Vu_09312(-)
ATGGAAGATGCAAGATTCAACCTTCCTCCTGGTTTTTTCTTCTCTCCAACTGATGAAGAACTTGTTCTTCACTTTCTCTATTGCAAGACTTCTCTTATTCCATGCCATCCCAACATCATTCCAGACCTCGATTCTCGCCTTCATCCTTGGGAACTAAATGGTAGATAATATGAACTTCTTTTCAATTTTTCAAAACTATATATATATATATATATATATATATATACATTGTATATCATATATATACATTGTATATGATATATACATTGTATATGGCCATTTGTTGTGTATTCATGAATGCATGTGTTTAATTTATGCAGGTAAGGCTTTGTTAAGTGGGAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAACAGCGGAAAATGGGTGTTGGAAGGAAATAGGTGTGACGGAACCTATATTTTCAACTTTTGACAAGAAAGTGGGAACGAAGAAGTACTTAGTATTCCACATTGGTGAAGCTCCACATGTTACTGAAACCAGCTGGGTAATGCAAGAATATAATATATGTTCTTCTGGGTTTGACACTGCGTCCTATAGAAGTTCTAGGAGACGAAAACATGTAAGTGACTTTGTTTAATTCATTTGTTAAGCTAATTACAGGAGAGATTATTTTCTATTAATATGTTAATATTGTTGTTGTCCCTGACACAGGATCAAAGTTGGAGCCAGTGGGTTTTGTGCAGAGTGTACGAGAAGATGAGGTCTGAAGGTGTAAACTGCTATAGCGATGACGATGAGAGTGGATCAGAGCTTTCATGGTTAGATGAAGTTTATCTGTCGTTGGATGATGATCTTGATGAAATTGGCATGCCAAATTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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