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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09283 LG2 19598835 19601660 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
T/A 19598920 missense_variant p.Glu262Val
A/G 19598925 synonymous_variant p.Asp260Asp
A/C 19598930 missense_variant p.Leu259Val
C/A 19598999 stop_gained p.Gly236*
A/G 19599010 missense_variant p.Met232Thr
C/T 19599068 missense_variant p.Ala213Thr
C/T 19599174 downstream_gene_variant
A/C 19599441 downstream_gene_variant
G/A 19599650 downstream_gene_variant
A/C 19599724 downstream_gene_variant
G/A 19599733 downstream_gene_variant
A/G 19600161 downstream_gene_variant
A/G 19600338 downstream_gene_variant
C/G 19600481 downstream_gene_variant
T/A 19600504 missense_variant&splice_region_variant p.Lys102Met
C/T 19600629 downstream_gene_variant
A/T 19600785 downstream_gene_variant
A/T 19600868 downstream_gene_variant
A/C 19601072 downstream_gene_variant
G/T 19601139 downstream_gene_variant
A/C 19601216 downstream_gene_variant
A/C 19601217 downstream_gene_variant
A/T 19601351 downstream_gene_variant
C/T 19601429 downstream_gene_variant
C/A 19601505 downstream_gene_variant
G/A 19601545 missense_variant p.Pro39Leu
C/A 19601629 missense_variant p.Gly11Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09283.1
MDKYEAVKELGAGNFGVARLMRNRVTKELVAMKYIERGPKQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRQLLSRIFVANPLRSALALHVLEGKDKSLNRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDSPNFHLQSVDEIMKIVGEARNPPPVSRLVKGFGWEGEEDLDEEVEEEEDEEDEYDKRVKEVHASGEFQIS*


CDS Sequence:
>Vu_09283.1
ATGGATAAGTACGAGGCTGTTAAGGAATTGGGGGCAGGCAATTTTGGGGTGGCCAGGCTTATGAGGAACAGGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCAAAGCAAATATGCCACCGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCTCCTCGGTTAAAAATTTGTGACTTCGGTTACTCCAAGTCATCTTTGCTGCATTCCCGACCCAAATCAACAGTTGGAACACCTGCTTATATAGCACCGGAAGTTCTTTCAAGGCGAGAGTACGATGGAAAGTTGGCTGATGTATGGTCGTGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGACTATGTTCACATATCTCAAGATTGTAGACAACTTCTCTCTCGTATATTTGTTGCAAATCCATTGAGGTCTGCTTTGGCTTTACACGTCCTTGAAGGAAAAGACAAGAGTTTAAATAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATTTATTACCAGAGGGACAGTCCAAACTTTCACCTTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAAATCCACCTCCAGTATCTAGGCTGGTCAAAGGTTTTGGTTGGGAAGGTGAAGAAGATTTGGATGAAGAAGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGGGAATTCCAAATTAGTTAA


Promoter Sequence:
>Vu_09283::LG2:19601660-19603660(-)
AATGTTCATTTTGTTTATGACTTGTTAAACTTCAAAACATGAAGACGTTAGATGGTCCAATCTTATAAGCGATCTTGTCTTAACATGTTTATGCTTGTTATCGATTATGCAATGTTTTAAATTAGTAAGGTGAATCCTACTAAATTTTGGATGTTACATTGTGGTATCAAAGTAAGTCGAACCTAAGGAGATTTGTGGGAAATGGGTGCTATGTTTTTGTTATGTTGGTTGTGTGTTTGTTTTAGTGATAATTGTTGAAGAGCTCAAAACAGTCCATCATTAGAATGATCATAGGGATTGCTAGTTTGTTATGTTGTCTTGGGAAAGTATAAGTGTCTATAGAAGTTTTGTGGGAGGTTTCACAAGGTTGATAGCTTTTTTAACATGGTTGATACGAAAAGATCATTCTTTTACATGGGCAGATTAGTGAAGAGAGTTTTTAGAAAGTTGAAGAAGAGGTTGATCAATGCCTCATTATTGTTTATACTTGTCACAGGGAGACATTTTGAGATTTATTGTGATGCATCACACCAACAGATTGGGGTGCGTGTTAACGTGGGTGAAAAAGGTGGTGATTTATGCTTCTCAACACTTGAAAGTTGAGAGGAATTGTTCTACCGGTGACTTAATGATTGTTGTACTAATGTTTGCTTTAAAATAGTAAAGACATTATCACTATTTAACATATATTGAAGTTCAAAATATAAAAGATTTATACTAAAATTCAATTATTATTAGTTTAATATTTGTTCTTTATGTGATTGTTGAATAAAATTTTTTTAGTGCATAAAAATATATTTCATTAAAATTAAAAGGAAGAGAGTAAAGAAAAGTTTAAAATATTTTTAAATATCAACTTTATTTGTTAACATTTACAAATTTTGATAAATATTTTAGTTATTATGAAATTTTATTTAATATTTTATTTTGAAATATATAATTATAATTTCTTTCTAAATATTTGATATTGGGAAAAAGATGCATATTTTGATATTAAATGTTTGATAATATTATGATTATTTTTCAAAATTTTATTACTTTGTAATAATTAATAAATTGACGTTAAAACATAAAAAAAAGTAAATATGAGATATAGGCACGATTACAAGTGTATACTCCTGACCCGAAAGAGATGGAAAAGTGACAATTTTTTTTTATATTTATTAGATTTGAATATACATACGAGAATTTTATTTTTTTAAAAATAAGAATGTAATAACAACTAAAGAGTCCTAAGTAATTGCATTATTAATAAAATATCTTGATAATATATATTTATATTTTATTAAAACTGGTTATTTTTAATATTAATACGACTTAACTAAAATTATTTTAATTCTATACTTTTCTTACATTTAATTCAAAGTGTTTATACAACCATAATACATATTTAAAAGTTTTTACTCCTTCCAAACCTACTTATAAATAACACAAATTGATGAAGTCAAACAAATTCTAAATAATTTAGTTTGGAAGCATTTCACACGTCTTACATCTTAATTAATTTAATCTACACTTTTCTATATCGAGAAATGAAATGAAATTAAAATTAGAAGAAACAATAATGAGAATAAATATTGGTATATAGTGGAATTAATGAAGGACTAGTTTTGAAGGGACCCACTCTGCAGAAGATGTTGGAACATGGAAGGTAAGTCAATTATGGAAACCTCTTCTTAAAGTGAACATCTAATTCCAACCAAAGCACAAAAACACACTCACTGCACATTCTAAACCTCTGAGTGAATCATTCGACGATTATTAATGGATAAAGTGACAGAAGCAACTGACAAACATAACCGATAACCAAGTGCCACCCTGCACCACTTACAATACCTTTTACCCCCAACTCTTGCTTTGCTTCAAAACCCATTATTATTCGTTTCCCTACCCTTTCTTCTCTTCTTCATCGTTCGCATCAAGCCTCCACTTTTTGCATAACCTTTTGATCAAAGTGGGAACAACATAGAATGCTTGTGTGATTCTCTATTTTCTAGTTC


Gene Sequence:
>Vu_09283(-)
ATGGATAAGTACGAGGCTGTTAAGGAATTGGGGGCAGGCAATTTTGGGGTGGCCAGGCTTATGAGGAACAGGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCAAAGGTTTCTTCTTTAATACAATAGTTCCATCAATTTATGATTTTTTTTTTTCACAACCCTTTTGTGTTTTTACTGTTAAGGAGTTGAAGAGATGAAGCATAACTGAAGAAAGAGGAGACTTGTTTGTATTTGCCTATTTGTTGATTAATTCCCCTATGATTTGTTGTCTTCACTGTTTATTAAATGAAAGGCTTAAACTTTAACTTGTTTTTTCTTTTTCTTCAACTTCAATTTTCAGATTGATGAGAATGTGGCAAGGGAGATTATGAACCACAGGTCCCTTCGGCATCCCAATATAATTCGTTACAAGGAGGCAAGGAATTTCATTTACTTCTTTTATTTAACATGCTGGATCACTTTGTGTTGAGCACTAGCACTGCACATTAATGAATTATTTGCTGTTTCTTTTCTTCTACAATGGAATGTTGCTTTTGCAGGTGGTTTTGACTCCCACACATTTGGCAATTGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGACGAGGTTAATAGCTTTACAAGCTTTGGTAATTTTCCCCCTTGCTTTTTGTTTCAATATGTTATGTTTCACTTTCCTTTGGTTGTAATGTTCAGGCTAGATATTTCTTTCAGCAGCTGATCTCTGGTGTCCATTTCTGTCATACAATGGTATGTTCATGCTCAAGTTTGTGGGAAATCATGGCAGGTTCTTACTGAAAATCATGTTATTTCTCACATATGCTCGTTTACTGTTCTTTTGCAGCAAATATGCCACCGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCTCCTCGGTTAAAAATTTGTGACTTCGGTTACTCCAAGGTATTGGAATTAGCATCATCCAGCTCAAAATTTCAGTTACCGTTAGAACATTTTTTAATGTCTCGTGTCTGTGATGTAGTCATCTTTGCTGCATTCCCGACCCAAATCAACAGTTGGAACACCTGCTTATATAGCACCGGAAGTTCTTTCAAGGCGAGAGTACGATGGAAAGGTACTATATTAGCTTCGTATGGTTCTTTAGAGTTCCTTGCATCTTTCATAGTTTTGTTGCTTTGTTCTTCTGATATGCTACCAAGAATGAAGTATATTGAGTATTTTACATGCTCACTTTTGAACCAATGTTAATGATTATATGATGTACTTTCTGTTTCAAAATTTGTGTTAGTTGGCTGATGTATGGTCGTGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGGTATGCTTACTCCTTTTCAATACTGATTTGCACAATGTTTCTTATATTATTTTTGCATCACTTTTATCCTGATTTCCTGTTCTATTCTACAGCGTATAATGGCTGTTCAATACAAAATCCCTGACTATGTTCACATATCTCAAGATTGTAGACAACTTCTCTCTCGTATATTTGTTGCAAATCCATTGAGGGTATGTTATAATATTGCTTTATGAGCTCGACTTACACTTTCATTGCAATTCTGTTAGACTTGCAACTGATCAGATCATGTCATATCATGTGTTCCATGCCTCTTTTATTGTCTAAAGTATATATATTTTATTAAAGTTACTTTTCAACCTTGCGAACCATTTTGCTAATGAATAGAAAATACTCAGAAGATACGTTTCTGATAAAATTCACCATATTGGTGGTTCAAAGCTAAACCTATAGAGGAAGTTTATACCCAGCTTTTATTTTATCTTCTTCGATAGGTATGATTGGAGTGTTTCGATTTCTCTATTTGACTTTTATGTGTATCTTATATCCGCAAGAACATTAGTTAGACCTCTTTAATGTTCTTTTTACTTCTTTCCAAATACTCTTTTTTTGAGAGTTTCCATGAGTGTCAGGATAGGCGGATGTACAATTTTGAGGGAAGTTTTATCAAATTGTAATATTTTCAGATTCAAACACTTGTTGTACTTGATTTCTTAAATTTAGGTGATGCCATGTACAATTTTTACTCGCTATATATTTTAGGGGACATTTGCTTGTATTTTTATTTTATGTTTTGAACTTTTTGAATAAAATTTTTTCAAGGAAAATAAAAAACAAAAGTAAACGTCCCCTTAGTTATTTTACCAGAATTTGATTCTATCCTTTTTAATCAAAGTCTTTCTGTGGTTTTCGAATCTTACATTCCTTCTTTGAATGCTCTACTTGTGTCTTTGGTTCAGTCTGCTTTGGCTTTACACGTCCTTGAAGGAAAAGACAAGAGTTTAAATGTGATTTCTGTCAAACAACATGCTCTTGAGAATATATAACTAACTACTTTTGGATTGCTAACTGTTACAAAATATTCTTTATTGTTTACAGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATTTATTACCAGAGGGACAGTCCAAACTTTCACCTTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAAATCCACCTCCAGTATCTAGGCTGGTCAAAGGTTTTGGTTGGGAAGGTGAAGAAGATTTGGATGAAGAAGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGCAAGTGGGGAATTCCAAATTAGTTAA

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