Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09117 LG2 15381243 15383111 PREDICTED: leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of floral organ abscission, negative regulation of floral organ abscission, negative regulation of floral organ abscission, negative regulation of floral organ abscission, negative regulation of floral organ abscission, positive regulation of cell death, positive regulation of cell death, positive regulation of defense response
Cellular Component   located in   peroxisome, plasma membrane, plasma membrane
Molecular Function   enables   protein binding, protein binding, protein binding, kinase activity, protein serine/threonine kinase activity, protein binding, protein tyrosine kinase activity, protein binding, protein binding, transmembrane receptor protein tyrosine kinase activity, protein binding, transmembrane receptor protein tyrosine kinase activity, protein serine/threonine kinase activity, protein binding, transmembrane receptor protein tyrosine kinase activity, protein tyrosine kinase activity, protein binding, protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein binding, protein serine/threonine kinase activity, protein binding
SNP Position Effect Amino acid change
T/C 15381271 missense_variant p.Leu10Pro
A/T 15381402 missense_variant p.Thr54Ser
C/G 15381695 synonymous_variant p.Ser151Ser
G/A 15381802 missense_variant p.Arg187His
C/T 15381866 synonymous_variant p.His208His
G/A 15381936 missense_variant p.Ala232Thr
T/A 15382234 missense_variant p.Met331Lys
G/T 15382239 missense_variant p.Val333Phe
G/A 15382568 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09117.1
MVGKIRLLLLSLFFFLISIHAKLELYPSDFKALLALRKDFGVNGQLDLNEACYTEGVFCERRLSTKETYVLRITRLVFKSKHLKGVLSPAIGRLTELKQLLLSHNQLVDRLPPQIVDCRKLEILDLSNNLFSGEVPSELSSLTRLRALDISSNQFSGNLNFLKYFPNLETLSVADNLFTGRVPSSVRSFRNLRQFNFSGNSFLEPSLHSSSDPVLSRRFLLDGADAPSPPPASSKRNSQASNVSPASAPGPSPNHHKHKHTKRKLLGWILGFLAGALAGTLSGFVFSLLFKLALALIKGRGKRAGPDIFSPLIKKAEDLAFLEKEDGLASMEVIGRGGCGEVYKAELPGSNGKMIAIKKVIQPPKDAAELAEEDSKAMHKKMRQIRSEINTVGQIRHRNLLPLLAHTHVTTSKVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVTGKLPSDEFFQHTDEISLVKWLRNILSSENPKKAIDPKLLENGYEEQMLLVAKIACFCTMDDPKERPNAKDVRCMLSQIKH*


CDS Sequence:
>Vu_09117.1
ATGGTTGGCAAAATTCGCTTATTGCTTCTTTCACTGTTTTTCTTCTTAATCTCGATCCACGCCAAGCTTGAACTCTACCCCTCAGACTTCAAGGCACTCTTGGCTCTGCGAAAGGATTTCGGAGTCAACGGTCAACTGGACCTAAATGAAGCATGTTACACGGAGGGTGTGTTCTGCGAGCGAAGGCTCTCCACCAAGGAAACCTACGTCCTCCGAATAACCAGGTTGGTCTTCAAATCAAAGCATCTCAAAGGTGTCTTGTCCCCCGCAATAGGACGCCTCACCGAGCTCAAACAACTCCTTCTCTCCCACAACCAACTCGTTGACCGCCTCCCTCCCCAAATCGTTGACTGCCGTAAGCTCGAAATCCTCGACCTTTCCAACAACCTCTTCTCCGGGGAGGTCCCCTCCGAACTCTCCTCTCTCACGCGCCTTCGCGCGTTGGACATATCCTCCAACCAATTCTCCGGCAACCTCAACTTCCTCAAGTACTTCCCCAACCTCGAAACCCTCTCCGTCGCCGACAACCTCTTCACCGGAAGGGTGCCTTCTTCCGTCCGCTCCTTCCGCAACCTCCGCCAATTCAACTTCTCCGGCAACAGCTTCCTCGAACCCTCTCTCCACTCCTCATCAGACCCCGTTCTCTCGAGACGTTTCCTCTTGGACGGTGCGGATGCACCTTCTCCTCCGCCTGCCTCAAGCAAGAGAAACTCCCAAGCCTCTAATGTTTCCCCTGCATCGGCACCTGGTCCTTCACCTAACCATCATAAACACAAGCACACTAAGAGAAAACTCCTGGGGTGGATTCTCGGGTTTTTGGCAGGGGCACTGGCTGGAACCTTATCAGGGTTCGTGTTTTCTCTGTTGTTCAAACTGGCTTTGGCGTTGATCAAAGGAAGAGGAAAGAGAGCGGGTCCTGATATTTTTAGTCCCTTGATTAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAGGAAGACGGACTCGCTTCGATGGAAGTCATTGGACGCGGTGGCTGTGGAGAGGTTTACAAGGCTGAGTTACCAGGAAGCAATGGCAAAATGATTGCTATAAAGAAAGTTATTCAACCTCCCAAAGATGCTGCTGAATTAGCAGAGGAAGATAGCAAGGCTATGCATAAGAAAATGAGGCAAATTCGGTCTGAGATTAACACTGTGGGACAAATTAGACACCGAAACCTTCTGCCTCTGTTAGCGCATACTCACGTAACCACCTCCAAAGTGGCTGGTACTGTGGGGTACATTGCTCCTGAGTATCACCAGATACTTAAGTTCACTGATAAGTGTGACATCTACAGCTTTGGAGTAATCCTTGGGGTGTTGGTGACTGGGAAGCTTCCTTCCGACGAGTTCTTTCAGCATACTGATGAGATTAGCTTGGTCAAGTGGTTGAGGAATATTTTAAGTTCTGAGAATCCCAAGAAGGCTATTGATCCGAAGCTGCTCGAAAATGGGTATGAGGAGCAGATGCTTCTGGTTGCGAAGATTGCATGCTTTTGCACCATGGATGATCCCAAAGAGAGGCCTAACGCAAAGGATGTTAGGTGCATGTTGTCTCAGATCAAACACTGA


Promoter Sequence:
>Vu_09117::LG2:15379243-15381243(+)
AGAACTTCTACCGTTCGCCGCTCGGGAAGAAGTTCAAAAAAGAACTTCGGATGTCCCCGCTCAACGTAGGAAGTTCGAAAAAGAACTCTTACTATTTGCCGCTCGGGGAGAAGTCCGAAAAAAGAATTTCGAATGTCCTCGCTCAACGTAGGAAGTTCGAAAAAGAACTCCTATTGTTCGCCGCTCGGGGCAAAGTTCAAAAAAGAATTTCGAATGTCATCGCTCAACGTAGGAAGTTCGAAAAAGAACTCATATCGTTCGCCGCTCAAGGAGAAGTTCAAAAAAGAACTTCAGACGCCTCCGCTCAACGTAGGAAGTTCAAAAAAGAACTCCTACCATTCGCCGATCGGAGAGAATTTCAAAAAAGAACTTGAGACACCTATGCGCAACGTAGGAAGTTCAAAAAAGAACTTTAGACGCCTCCGCTCAACGTAGGAAGTTCAAAAAAGAACTTCTACCATTCACTGACCAAAGAGAATTTCAAAAACGAACTTGAGACGCCTCTGCTCAACGTAGGAAGTACAAAAAAGAACTTCAGACGCCTCCGCTCAACGTAGGAAGTTCAAAAAAGAAAGCCTACCATTCGCCGATCAGAGAGAATTTCAAAAAAGAACTTGAGACACCTCTGCTCAACGTAGGAAGTTCAAAAAAGAACTCCTACCATTCGTCGCTCGGAGAAAAGTTCAAAAAAGGACTCCTAGCGCCTATTGCTCAACCTAGGAAACCTTGTCAAGTTCTAATAGCTCTTCATTATAAAAATAAATTGTAAAATATTGAAGCGTTTATTTTATTTTGTTTAACGCATATTTTTGTGAGTTAAATATCTTGTACAGGAAAAAAGTTCTAGAAAAAGAACTCCTATCCGTCACCACTCGGCCTAGAGAAAAAGTTTCAAAAAGAACTCCTAGTGTCTACTGCTCAACCTAGGAAAAAGTTTCAAAGAGAACTCCTAGAGTCTGCCGCTCGGTGCAAAGAGAAATGAAGACTTAAAGCGCGTCAAAAATAGACTCCCTAAATACAACGTATGTGACCTCTCTTAAATTCATAATAATCTCTGCGCACATCTTTCAATAAAGAGCTTGGTTGGGCTTGGGAGACTTATGTACTATATGAAATATACCGATCGAAGTTAGCAAATATTAATGGATCAGATTGTCTTACGCTTTACAAATATACTATATTAATTATTGATTATTGAGTTTGATTGCCTAAAAATATATTGCATTAATAGTTAATTAATGTGTTTGAGTGTCACAAGCCCTATAAATATATAATTGATGTCTAGGTAAAGACATCTTATTCTAACTTGAATCTATTCTAATTAAAATATAAACTTCTTTATGAAACATATCTGACTTGAACGTCGGAGTGTCTCTTACATATCAACAATTCATCGGAGTGGAGTACATTCTCAAAGAGAATTGAACTATCGAAAAATATCAGAGCAAGAAAATACGACCCATCTTCGAACAATTTCAACCGAAACAATATCTTTACTAAAATTTTGGTATTTCATTTTAAGTTGAAAGATAAGGAATAGTTTACGTAATCGACTAACCGAAACAATTTCCATATCCATATTCATGCTTAAACAAATGAATCCAGAATTTGAAATAAAAATGATAGTAGTGTCGAATAATATTCAGACATTTATTTTCCATCACGACCTTGAATCCGGCAGTGTGTGAAGGTGCGAGCAGCTGTAACTAGGAAATGATGAGGTAGTGTAGGACCAGTGAGACTTGTGAGTGTATTGCTTTGTAATTTGGTGAAACAAGATAAACGAAACAAGAGAGCGACAGTCAACTGAAGGAGAGAAACATTATTATGAAAAAATGAATAAATAAATATAAACCAACGAAAAAAAGGAAGTAGGAAATTTACCGAGTGGGGGATGTGGAAAGAAAATTCAAAGAAGAGGAAGAAGTGCAAAATTTTCCACACGGTTTGGCGCTATAAGAGTAAGCAGAAAACGATGCAGAAGTGAGTACAAAGCACAA


Gene Sequence:
>Vu_09117(+)
ATGGTTGGCAAAATTCGCTTATTGCTTCTTTCACTGTTTTTCTTCTTAATCTCGATCCACGCCAAGCTTGAACTCTACCCCTCAGACTTCAAGGCACTCTTGGCTCTGCGAAAGGATTTCGGAGTCAACGGTCAACTGGACCTAAATGAAGCATGTTACACGGAGGGTGTGTTCTGCGAGCGAAGGCTCTCCACCAAGGAAACCTACGTCCTCCGAATAACCAGGTTGGTCTTCAAATCAAAGCATCTCAAAGGTGTCTTGTCCCCCGCAATAGGACGCCTCACCGAGCTCAAACAACTCCTTCTCTCCCACAACCAACTCGTTGACCGCCTCCCTCCCCAAATCGTTGACTGCCGTAAGCTCGAAATCCTCGACCTTTCCAACAACCTCTTCTCCGGGGAGGTCCCCTCCGAACTCTCCTCTCTCACGCGCCTTCGCGCGTTGGACATATCCTCCAACCAATTCTCCGGCAACCTCAACTTCCTCAAGTACTTCCCCAACCTCGAAACCCTCTCCGTCGCCGACAACCTCTTCACCGGAAGGGTGCCTTCTTCCGTCCGCTCCTTCCGCAACCTCCGCCAATTCAACTTCTCCGGCAACAGCTTCCTCGAACCCTCTCTCCACTCCTCATCAGACCCCGTTCTCTCGAGACGTTTCCTCTTGGACGGTGCGGATGCACCTTCTCCTCCGCCTGCCTCAAGCAAGAGAAACTCCCAAGCCTCTAATGTTTCCCCTGCATCGGCACCTGGTCCTTCACCTAACCATCATAAACACAAGCACACTAAGAGAAAACTCCTGGGGTGGATTCTCGGGTTTTTGGCAGGGGCACTGGCTGGAACCTTATCAGGGTTCGTGTTTTCTCTGTTGTTCAAACTGGCTTTGGCGTTGATCAAAGGAAGAGGAAAGAGAGCGGGTCCTGATATTTTTAGTCCCTTGATTAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAGGAAGACGGACTCGCTTCGATGGAAGTCATTGGACGCGGTGGCTGTGGAGAGGTTTACAAGGCTGAGTTACCAGGAAGCAATGGCAAAATGATTGCTATAAAGAAAGTTATTCAACCTCCCAAAGATGCTGCTGAATTAGCAGAGGAAGATAGCAAGGCTATGCATAAGAAAATGAGGCAAATTCGGTCTGAGATTAACACTGTGGGACAAATTAGACACCGAAACCTTCTGCCTCTGTTAGCGCATGTTTCTAGGCCTGATTGCCACTACCTCGTTTATGAGTTCATGAAGAATGGTAGCTTGCTGGACTTGCTGCAAAAGGTTCAAAACGGTGAGGGAGAGCTGGATTGGTTGGCACGGCATAGAATCATGCTTGGTGTTGCTGCTGGACTTGAATACCTTCACATGAATCACAGCCCTCGCATCATTCACAGGGATCTCAAGCCTGGAAATATTCTTCTTGATGATGACATGGAAGCACGCATAGCTGATTTTGGACTCGCTAAGGCAATGCCGGATTACAAGACTCACGTAACCACCTCCAAAGTGGCTGGTACTGTGGGGTACATTGCTCCTGAGTATCACCAGATACTTAAGTTCACTGATAAGTGTGACATCTACAGCTTTGGAGTAATCCTTGGGGTGTTGGTGACTGGGAAGCTTCCTTCCGACGAGTTCTTTCAGCATACTGATGAGATTAGCTTGGTCAAGTGGTTGAGGAATATTTTAAGTTCTGAGAATCCCAAGAAGGCTATTGATCCGAAGCTGCTCGAAAATGGGTATGAGGAGCAGATGCTTCTGGTTGCGAAGATTGCATGCTTTTGCACCATGGATGATCCCAAAGAGAGGCCTAACGCAAAGGATGTTAGGTGCATGTTGTCTCAGATCAAACACTGA