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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_09082 LG2 14964479 14967444 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   signal transduction, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation
Cellular Component   is active in   cytoplasm
Molecular Function   enables   protein kinase activity, protein serine/threonine/tyrosine kinase activity, protein kinase activity, protein kinase activity, protein serine/threonine/tyrosine kinase activity, protein serine/threonine/tyrosine kinase activity
SNP Position Effect Amino acid change
C/A 14964499 missense_variant p.Phe7Leu
T/C 14964544 synonymous_variant p.Asp22Asp
C/T 14964546 missense_variant p.Pro23Leu
T/C 14964601 synonymous_variant p.Tyr41Tyr
A/C,* 14964647 intron_variant
C/T,* 14964651 intron_variant
G/C,T 14964659 intron_variant
T/A 14964685 intron_variant
A/C 14964700 intron_variant
G/A 14964712 intron_variant
T/G 14964765 intron_variant
G/T 14964829 intron_variant
T/A 14964840 intron_variant
C/T 14964845 intron_variant
C/T 14964873 intron_variant
G/T 14964895 intron_variant
T/A 14964899 intron_variant
T/C 14964944 intron_variant
A/T 14964969 intron_variant
A/T 14965025 intron_variant
G/A 14965139 splice_region_variant&synonymous_variant p.Leu53Leu
T/G 14965143 splice_donor_variant&intron_variant
A/G 14965144 splice_region_variant&intron_variant
C/A 14965487 intron_variant
C/G 14965933 intron_variant
A/T 14965951 intron_variant
G/T 14966684 stop_gained p.Glu127*
T/C 14966936 missense_variant p.Phe183Leu
A/G 14966942 missense_variant p.Ile185Val
T/C 14967298 missense_variant p.Phe269Leu
G/A 14967302 missense_variant p.Ser270Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_09082.1
MESGVRFYSVDEFRLDPKWLIDPKHLFVGPQIGEGAHAKVYEGKLSMILIIVSGFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDRHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKVPFEGMSNLQAAYAAAFKNVRPSAENLPEELALVLTSCWQEDPNARPNFTQIIQMLLNYLYTVAPLEPMIPSRIFSSENTVLPPESPGTSSLMAKRDDTGDTPRAKDEVKPNGFLCCFSQCY*


CDS Sequence:
>Vu_09082.1
ATGGAATCTGGAGTTAGGTTCTACTCAGTTGATGAGTTCAGATTGGACCCCAAATGGCTGATTGATCCTAAGCATCTCTTTGTTGGGCCACAGATTGGAGAGGGAGCTCATGCTAAAGTCTATGAGGGAAAGCTCTCGATGATTCTTATTATTGTGTCTGGTTTTATTGGTGCTTGTAAGGAGCCAGTAATGGTGATAGTCACTGAGCTGCTATTAGGAGGAACATTGCGTAAGTATTTGCTTAACATGCGTCCCAAATGCTTGGATAGACATGTTGCCATTGGTTTTGCACTTGATATTGCACGTGCTATGGAGTGCCTGCATTCCCATGGGATCATCCACCGTGATCTTAAACCTGATAACTTGCTGTTGACTGAAGACCAGAAAACAGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAATCATTAACCGAGATGATGACTGCTGAAACAGGAACTTACCGCTGGATGGCTCCAGAGTTGTATAGTACTGTCACACTGAGGCAAGGGGAGAAAAAGCACTACAACCATAAAGTTGATGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTACACAACAAAGTTCCGTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAGAATGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTAGCTCTAGTTCTTACTTCATGTTGGCAAGAGGACCCAAATGCCAGACCCAACTTCACCCAGATAATCCAAATGCTCCTAAATTATCTTTACACTGTTGCACCTCTTGAACCCATGATTCCTTCAAGAATATTCAGTTCTGAGAACACTGTCTTGCCACCAGAGTCTCCCGGAACTAGCTCATTAATGGCAAAACGTGATGACACAGGGGATACACCAAGAGCGAAGGACGAAGTCAAACCTAATGGTTTTCTTTGCTGCTTTAGTCAGTGTTATTAA


Promoter Sequence:
>Vu_09082::LG2:14962479-14964479(+)
ATAACATTTGTAACTTTTGAATATGTTTTTAGTATTATAAATCATTTAAGTTTTATCATATTTGACTTAATCCTATTAATATAGAGGTTTAAAGTTGACTATGAAACTTATACGTTACTCAAATTTATTAATATTTATTATTGAGTAATTTTTTAATTCGTATTTAATATTTTATATTTGAAGTTATAGGTGTTAAAAATGGAAAGATATTGTAATAAGTGAAGATGGGCATGATGGTGAAGGTATATTATATTTTAGTAACAAAAACTTTTAAATTCATTTACCATACATAACTTTTCCCTTTTTGTGAATGCAAATGAAATTATTTAACATTTGCAAAAATTAATAAATGTTTGATTGTTATAAAATTTTAGTTATGTATAATTATTTAGTATTTTATATAGTTTTTTATTTTTATCCAATTGTTATTTAGTACTTTAATTTAATATTTATATAAATATATATTTTTTAATATTTACATTATTGAAAAAATAAAATATATCTATTTTACGTTCCATTTCCTTACCACCCTTAATATACACTTTTCAATCTTTTTTCCTTTAATATTCTTCCATCTATAGAAAATATTCAAATACTTACTCTAATGACCACATTACTATACAATCACATTTAATTGTTCCACCATCTAAAAATAATTTAAGAAATGCAAGAAATCCTGAATTAATGTGTGATCTTAAAATGATTCTTTTAAGAAAAGTCAAACATCTAATTAAAGAATGATACAATCTTCCAACAAAAAGGGAAACATATCAGTCTTGATAAAAAAAATATTTCATAAATTCTCTAACAATTAACTCTATTTAATAACTTAATTATGCCTCTAAACCAAATATCTCCCCATGCACAAACAGTATGGGATCAAATTTTCCAAAACTACTCTAAACTAAACAACGATGTCTCATAGCATATGATTGTGGAAGTACATTAATACTGACTCAGGGAACGATTCCCATGTAAAATGCAAAATTTTAATATGTTCTCGTACAAAGGAAAAGAAATACAAATTCCTTAATCCATCCCACATATGTAGGAACCATCATTAGGATTTCTGTGTCTCATCATCTTTTACCATAAACCGGGTTTAACATGTCCCTCTTGGTTAAGCTTATCTAGGTGTCGTCCAATGTTGAGATGGTCAGTTTCCATGTGCACTTGAAATGGTTTATGGCTCCACACTCTTTACTTTGATTATTTGTATTATTAATAGTGATATTACTATTACTACATCACTCGCTTCCTGATCCTCTTCTTTTTTTGTTCTCAAATTAAGTAAAGTTAAAAAGTTTCTTCAGAGAACTTTCCCATACTTTATTAAGTAATTAATACATAATATATGATCTCAATCCTTTCAGCGGATCATGATTCTGTCTGCAGATCAAGTGTAACGTTTCTGTGCCCATACTAATTGTGATTATCATTAATTAAACCAAAACCCATTAACTAATGCCATTATTTTTCACTAGGATTTTCTTTCATATAGCTTGATACATGAGAGAGAGAGATGGATTTAGTTTTTACTTGAGGGCTTGGTGATTGGTTCTTTTCCATGTTCCCCTTTCCGGGGATTCTTCTCTTTTCCCCATGAATTTTCAAAATATCTTTTTGGGCTTTGGGCTTTGCTTTATTTTGTGGTCACTTTCTCTCTCTCTATCTCAAGCATGTGGGTTCCATGCTTCTGTCTCCGAAGGAAATGTAAAACATCACCCTGCTGAGTTTTTGATCTCCGGGCCTGACTTTTTTAGATGTGGTTTCTGAGCCTCAGAACACACTGCAGAGCATGTTTAGCTTAGTTCTCTGTTTCATGTCAGCATATCCATTCATTTCCTCTGCAAATCCGCCTTCTTCCAATGCCTCCCTTCTTCTAGGGTTCTCTTCCATCTGATTTCACTCTGCCAAGCTGGAGGCTCATTACTGGCTCATGAAGAATTTTACTTGAGAAAATCTTTTTCCATTATTGCAGAAGCAAAAGAAAAACAAAA


Gene Sequence:
>Vu_09082(+)
ATGGAATCTGGAGTTAGGTTCTACTCAGTTGATGAGTTCAGATTGGACCCCAAATGGCTGATTGATCCTAAGCATCTCTTTGTTGGGCCACAGATTGGAGAGGGAGCTCATGCTAAAGTCTATGAGGGAAAGTAAGTTCGTATATTCAAACCCCATTTCCTATTTCCTATTTCCTCTCCCGAAGGTTAAATTTTTAATCTTTTCTTTTTGGGAAATTGCATATCTCATGCCTGGATGTCATTTACTTTTGGATTTGTAATTATTGATTGTGTATGTTATTTTGATTTGTAAAGCTTAACGTGTTGATTGGGCTAATTTTACATCTTAATTTGGACTTGGGTTGACCTACAGTTTCATTTCCTGCAACAATCACTAATGGGCCTGAATTATGCTTCAGTGATCTGAGTAATTGTTTTGAAATTTTTGATGAAGTTTCTTGTTTTGTCAATCAGCTTCTAATTCTTTTTGCTGGGTTTTTTCAGATATAAAAACCAAACTGTTGCTATTAAAATTGTGCACAAGGGAGAAACTGCAGATGATATCGCCAAGAGAGAAGGGCGTTTTGCAAGGGAGGTGGCAATGTTGTCTAGAGTGCAACATAAGAACTTGGTGAAGGTGGGAATTTGGTTTAGGCTCTCGATGATTCTTATTATTGTGTCTGGTGTATGTTGTTCAAGCAAAGAGATATGTACAATATACAAAAAACTACTTGTTATATGCCAAGTTTCGAACTAGTGATGGTAAAAATTGCCACTCTGTTTCTCAACAGTTTATTGGTGCTTGTAAGGAGCCAGTAATGGTGATAGTCACTGAGCTGCTATTAGGAGGAACATTGCGTAAGTATTTGCTTAACATGCGTCCCAAATGCTTGGATAGACATGTTGCCATTGGTTTTGCACTTGATATTGCACGTGCTATGGAGTGCCTGCATTCCCATGGGATCATCCACCGTGATCTTAAACCTGGTAATAATTTGGTTTATTTTCTTTTAATAAACTAAAGTCAGATCCAGTAGACCTTAGTTTGTATCCATCGTAGTTTACGTTAATTTGCATTCTTGTGAAAATTCATGACTGGTGTTGCAACAGTATTCTTTATGGCGAGACTTCTATCTTTTTCTTTTATCTTCTTTTTGACTCGTCTAACATAAGAATTCCATGATCAAATTTGTTCTTTGTTTTATTTGCAACTGGCATGACCCTGTGTCTTTTTCAAATCCATTTTTATTGTTCTTCTCCGTTTATATGCATAGAATTTATGTTCAAAAGAACACCACATGATGGTTTGGTTTCAGATCCTCATTTTCCCAACCATTATTTTCACTTTTCACTTGTGCTTAGTTGCCTGCCATTTAATGTTAATTGGATGCCTCTATCAAATACTTATGCATTTCTTCATAACTAATCCGTAAGTCAAATACTTTTATTGGAAGAAAAATTATCACAATCAAATAACTGGTGAATATTTGTTACAATCAGTTTTAAAGGTTGCTAAGTATGTTCGTTAAGGGAGGTAGAATTGGATCTTTATGGAGTATACTGAAATAAAATGAGTGTTCACTTAGGTTGTTGTTGCATCTTACAGAGCAGTCAAAGTGAACATGGATCTAATTTGAAGACTGTACTTCCTCATCGTGTATCTTTGTGTCTTACTGGTACTGAATTGATCAGTTGTTGTGGACATATGCAATTTGATTTCCAAATCTTAATTGGTATTTAAGATTTAAATTAAGTTACAATTGTTTCAACAGTACGATATCTGATGACGATTGCTAGGAATTGATCATTTTTGTTCTCATCATACTATGTCCTTCTATCTAAGCACTGTGCTCTCCTCAAATACTGTAATATCTGCCATGTTTAAGTTCGATGATACCATTTTAAAATTTATAGTCAAATGGACAAGCTTTAATTGGTTCTTTGCTTCTAAACACACAATGTTTTGTTTGTGTTCTAATATGACATTGACCTTATGTTTGAGTCAAATGAAGTATATGACAGCACTGTTCATGCAGTTATGTGAAAACATTTCTTGATTTCCATTGCAATATAAAATAGCATTTTTATTCATGTTCTGCTATTGACTGTTAAGCAAGTATCCTTCTATCAATTGTAAAACTTGTTACAGTGTAGAACATCTGCATAATGAATATGAAGGTCCTTTTATTTTCCTCTATATAGATAACTTGCTGTTGACTGAAGACCAGAAAACAGTCAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAATCATTAACCGAGATGATGACTGCTGAAACAGGAACTTACCGCTGGATGGCTCCAGAGGTATATTGATTAATAGATGCACTCTCTGTCTTCTCTCCATATTTATGAGAATTTATGACTGATTACAGTGACAAAAATTGCAGTTGTATAGTACTGTCACACTGAGGCAAGGGGAGAAAAAGCACTACAACCATAAAGTTGATGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTACACAACAAAGTTCCGTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAGGTTAAAAGATCATGTGTCTATTACATCTTTTTATAAAACATTGTTTCTTATGTTTATTTGTACTACATAAAGTTGATAAGTTAAAATGTGTCTTTTGGTTTCAGAATGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTAGCTCTAGTTCTTACTTCATGTTGGCAAGAGGACCCAAATGCCAGACCCAACTTCACCCAGATAATCCAAATGCTCCTAAATTATCTTTACACTGTTGCACCTCTTGAACCCATGATTCCTTCAAGAATATTCAGTTCTGAGAACACTGTCTTGCCACCAGAGTCTCCCGGAACTAGCTCATTAATGGCAAAACGTGATGACACAGGGGATACACCAAGAGCGAAGGACGAAGTCAAACCTAATGGTTTTCTTTGCTGCTTTAGTCAGTGTTATTAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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