Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_09047	LG2	14307831	14308175	PREDICTED: serine/threonine-protein kinase-like protein At3g51990	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	14307895	missense_variant	p.Gly94Asp
C/T	14307932	missense_variant	p.Ala82Thr
G/T	14307960	synonymous_variant	p.Ala72Ala
G/A	14308054	missense_variant	p.Ala41Val
G/A	14308065	synonymous_variant	p.Ala37Ala
G/A	14308116	synonymous_variant	p.Phe20Phe
T/A	14308120	missense_variant	p.His19Leu
G/A	14308137	synonymous_variant	p.Ile13Ile
G/T	14308150	missense_variant	p.Ser9Tyr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_09047.1

MGCYLSCNSQSTIATCDPHFKKHKPLTAKPIHHFNYAEISAAASGFSVNTFLGRGSHGKVYKATLDGGKLLAAIKTTKLVSASKNHSTKCTDCGNCTSPVENEIEILSQVPSPS*

CDS Sequence:
>Vu_09047.1

ATGGGTTGTTACCTCTCTTGCAATTCCCAATCCACAATCGCCACCTGCGACCCTCACTTCAAGAAGCACAAACCCCTCACTGCCAAACCAATTCACCACTTCAACTACGCCGAAATCTCCGCCGCCGCTTCTGGCTTCTCCGTCAATACCTTTTTGGGCAGAGGCAGCCATGGCAAAGTCTACAAAGCTACTCTCGACGGCGGAAAGCTCCTTGCCGCCATCAAAACAACCAAACTGGTCTCTGCTTCAAAGAACCACTCCACTAAATGCACCGACTGCGGCAACTGCACCAGTCCCGTGGAGAACGAGATCGAGATCCTCTCTCAAGTTCCGAGCCCCTCATAG

Promoter Sequence:
>Vu_09047::LG2:14308175-14310175(-)

TGCGGATTGACAAACAGAGAGCAACCCTCTCAATTCACTCGCACAGTGCACCCATTCGCTATGCGGGTACATTGGCAGAGAACACCTCGCCAAGGTAACTCGCTATGCGAATCCATTCGCACAGCGAGTCTGCATAATCTGCAGAACGAAATTCTGCAGAATTCCACAACTCAACCACTCTTTACCAATTCTACTCAACTTGGCCAACTTCTAACGCTTCTAATTCGATGTATATACTAAATTAAACTTGCCTAAAGGATTCTAAACATTCCTAACATCAATCTAAATTGTTTATGCACCAATCTCTACTCTAAAACCTCCAATTCATCAACTTAAAGACTCAAAACTAATTATACCACTTTGAACCTGTTTTTGACCATTTTGATGACTCAAACCAGTCACATATAACCTATTTACACTGTCCCAGCATTCACCAACAACCCTTGACCACTAATTCTCAAATTCACTACCTCACTTCCTCTAAAATACACTAAACCAGCCTAAAATTCACATTACACTATACTTCCTCAACACTACAACAAATCACAGTCAATAACAATCACAATTTGCACACATTACAGCATATAGATTAATCCAAATCAGCTCATCAATCACAATTCATAGTTTCTACCATTTTAACAGTTAAGAACATACATTTACAAGCTGAAATGTTAACTGCACAGCACTAAATCACAGAATTCATTACATACAACCACAACTGATAATTAAATCACAACCTAGCTTCCCTTACCTCAGAGATAACAGCCACACACACAGAAACGTTCTAGCCGTACCTTGCACAGCAAGGAAAACTCAACAGAAACCTACAACTCACCAATTGGTGATAGAGAACCACACTTACAACCTAAATTGAGCCAGAAAAGGAAGAAATAACTACTAATCACATGCAACGAGAATCATTGCATGCTCACAACTCAGAGAAGAACGGACAGAAAAGCGAGACAACTTACCAGTTGAAGAACGAGAAATTGATCGGTCCAAAATTAAGCCCTCAACGCCAGGATCGCCTAGACACTTCCTGATCGTTGAACAGATAACCCAGTAAGAAGAAATTTTAGAGAGAATTCAGAGAACTCTCAGGAATAGAGTTATAGAGAGATGAAATGTTCTTAGAATAATGAGAAGTATTTATAAGAATTCTATTTATATTATAAGATTATTTTAAAGTAAAATAATCTCTCATTATTCTAATACACAAATCTGCTCTATAACACTCTATTTTTCAGGTCTTTACACAAAATGTCTTCTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTGTTCTTTATTATAACCAAAATGACTAAATTATAATATAATTTTTAATTATTGAAATAAAAATAATTATATTGATAAATTTTATTATATCCGTTTAGTAATTATTTTTTGGGTTAAATATGTTTTTAGTCCCTAAACTATCGAGCGATTTTGGGTTTAGTCCCTCTTTCAAACTAAGGTACATTTTAGTCCTCATCCTTAAGGAAACTTTGATTTTAGTCCTCCAAATCCAACGGCGTTAAAAAAAGGTCGAGGTGGCTAACGGTGAAATTGCATGATTTTTTTTTCTGACATTGAGTCAGTCTTTCTCAGCTTTTCTCTCTCCCTCTCCCTCGTATCCTTCCATCTTCCACTCCCTCTATCATCTTCACCAAATCCTCCAAACTGATTGAGATAAAAATCAAATCAAACATTTTGATAAATTTAAACCATGTTTGGATTGCAGTACTAGAAGAGATAATGGAGAAGTGTGCGTCCATGTTTGGATTGCATTCACATCATCCTAAAGCTGGGAATCACTTGCCACTTTAAAGTTGAAAACACCTTTCTTTCCAGTTATGGTTTTTGGCACCCCATGTGTTCCCTTTTCCACTATCACCTCTCTCTCTTCAACTTCTATTTCTCTCTCATTCCTCCAAACCCATTCCAATTCTCACTCTC

Gene Sequence:

>Vu_09047(-)