Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_09044	LG2	14278795	14281680	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/C	14278950	missense_variant	p.Cys911Gly
G/A	14279048	missense_variant	p.Ala878Val
C/T	14279113	synonymous_variant	p.Leu856Leu
C/T	14279323	synonymous_variant	p.Pro786Pro
C/T	14279333	missense_variant	p.Gly783Asp
G/A	14279487	missense_variant	p.Leu732Phe
A/C	14279656	synonymous_variant	p.Gly675Gly
T/A	14279673	missense_variant	p.Ser670Cys
A/G	14279764	synonymous_variant	p.His639His
A/G	14279817	missense_variant	p.Tyr622His
A/G	14279818	synonymous_variant	p.Gly621Gly
G/T	14279947	synonymous_variant	p.Leu578Leu
G/A	14280404	missense_variant	p.Pro426Leu
T/C	14280409	synonymous_variant	p.Lys424Lys
C/G	14280414	missense_variant	p.Gly423Arg
T/C	14280415	synonymous_variant	p.Thr422Thr
G/C	14280632	missense_variant	p.Ser350Cys
C/G	14280811	missense_variant	p.Gln290His
G/T	14280976	synonymous_variant	p.Ser235Ser
G/C	14281136	missense_variant	p.Thr182Ser
T/A	14281466	missense_variant	p.Glu72Val
G/T	14281664	missense_variant	p.Ala6Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_09044.1

MIARSAMGSICMCHFILPLTIAVVVTLGDNTAESYWLLKIKSELVDPSGALRNWSPTTHFCSWNGITCDVDEAHVVGLNLSGSGISASIPGEFSHLISLQALDLSSNNLTGSIPSELGQLQNLRILLLYSNYLSSNIPEEIGNLSKLQVLRLGDNSLADEIPLSIGNLSELTVLGVANCNLTGSIPVEVGNLKHLVSLDLQMNNLSGFIPKEIQGCQELQNFAASNNMLEGEIPSSIGSLKSLRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNKLNGEIPSELNSLSQLQKLDLSRNNLSGSLTLLNVNLQNLETMVLSDNALTGIPYNFCLRGSKLQQLFLARNKLSGGFPLGILNCSSIQQVDLSDNSFEGELPSNLDKLQNLTDLMLNNNSFIGSLPPVIGNISSLRSLFLFGNSFTGKIPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTSLTGIDFFGNHFYGPIPETIGKLKDLTVLHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQLSTITLYNNNFEGPLPDSLSLLRNLKIINFSNNKFRGSIFPLTGSNSLTVLDLTNNSFSGSIPSILANSGDLTRLRLANNYLTGTIPSELGYLTKLNFLDLSFNNLTGHVPPQLSNCKKIEHLLLNNNRLSGQMLPWLGSLQELGELDLSFNNFHGRVPAELGGCSKLLKLSLHHNNLSGEIPLEIGNLTSLNVFNLQRNSLSGHIPSTIQQCSKLYELRLSENFLSGIIPVGLGAVTELQVILDLSRNLFSGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHVLNLSNNHLHGLIPSTFSGFPLSSFLNNDHLCGPPLALCSEATRMKLSNSQVAAIIVAIVLTSTLICLVLLYIMLRIWCNWKKVAVSSEDCGMVEQKTRNGEYWNMNSPELFSSPDIQISATPCICNLKIDAAARENTLVR*

CDS Sequence:
>Vu_09044.1

ATGATCGCACGTTCAGCCATGGGTTCCATTTGCATGTGCCATTTTATTCTACCACTAACCATTGCTGTTGTTGTAACTCTAGGAGACAACACAGCAGAATCCTACTGGCTTCTAAAGATTAAATCAGAACTGGTTGATCCATCAGGAGCCCTGAGAAACTGGTCTCCAACTACTCATTTTTGTAGCTGGAATGGAATAACATGTGATGTTGATGAGGCACATGTGGTAGGCCTTAATTTGTCTGGCTCAGGAATATCAGCTTCCATTCCAGGTGAGTTCAGTCACCTAATTTCTCTTCAAGCACTTGATTTGTCTTCAAATAACCTCACAGGCTCCATCCCTTCTGAACTTGGGCAGCTTCAAAATCTAAGAATACTGCTTCTGTACTCAAATTATCTCTCCAGCAATATTCCTGAAGAGATAGGTAATTTGAGTAAGTTGCAAGTTCTTAGACTAGGAGATAACAGTTTGGCAGATGAAATCCCACTTAGCATTGGCAACTTGAGTGAGTTGACAGTGTTGGGTGTAGCCAACTGCAACTTAACTGGAAGCATACCTGTTGAGGTTGGTAACTTGAAGCATCTTGTGTCTCTTGATTTACAAATGAACAATCTTAGCGGATTCATACCTAAAGAGATTCAAGGCTGTCAAGAGCTCCAGAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCCTCAATTGGGTCTCTTAAATCATTGAGAATTTTGAACCTGGCTAATAACACTCTATCTGGATCAATTCCTACCTCTTTGAGTCTTCTCTCCAATTTGACATACCTCAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCTTCAGAGCTTAACAGTTTGAGCCAGCTACAGAAACTTGACTTATCCAGAAACAACCTTTCTGGATCACTGACTCTCCTTAATGTCAACTTACAGAATCTTGAAACTATGGTTCTGTCTGATAATGCTTTAACAGGTATTCCATATAACTTCTGCCTCAGAGGTTCTAAACTTCAGCAACTGTTCTTGGCTAGGAATAAGCTTTCTGGAGGATTTCCCTTGGGGATACTCAACTGCTCCTCAATCCAACAGGTTGACCTTTCTGACAACAGTTTTGAAGGTGAGCTTCCATCCAACCTGGACAAACTACAGAATCTCACAGATCTTATGCTCAACAACAACAGCTTCATTGGATCTCTACCTCCAGTAATTGGAAATATCAGTAGCTTGAGAAGTCTTTTCTTGTTTGGAAACTCTTTCACAGGAAAAATCCCAGTTGAGATTGGAAGGCTAAAGAGGTTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCTATTCCAAGAGAGTTAACAAACTGCACAAGCTTAACTGGAATTGACTTCTTTGGAAACCATTTTTATGGCCCCATTCCAGAGACTATAGGTAAGCTAAAGGATCTAACTGTTCTCCATTTAAGGCAAAATGATCTGTCAGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGGCTTCAGTTATTGGCATTAGCAGATAACAAGTTGTCAGGTTCCATACCCCCCACATTCAGTTACCTTTCACAACTTAGTACCATTACCCTTTACAACAACAACTTTGAAGGACCACTACCTGATTCCCTCTCTCTTCTTAGAAACCTTAAAATCATAAATTTTTCCAATAACAAGTTCAGAGGTAGTATCTTTCCTCTGACTGGTTCAAATTCTCTCACTGTTTTGGACTTGACAAACAACAGCTTCTCAGGTTCCATCCCTTCTATTCTAGCCAACTCTGGAGATCTCACCCGTCTCAGACTTGCAAACAATTATCTCACAGGAACCATTCCTTCTGAACTTGGTTACCTCACTAAGCTAAACTTCCTTGATTTATCATTCAACAACTTAACAGGACATGTGCCACCTCAACTCTCCAACTGCAAGAAAATTGAACACCTTCTACTGAACAATAACAGATTGAGTGGCCAAATGTTGCCGTGGTTAGGAAGCTTGCAAGAACTTGGTGAGCTGGATCTCTCATTCAACAACTTCCATGGAAGAGTTCCTGCTGAGCTTGGAGGCTGCTCAAAGTTGCTTAAGCTTTCTCTCCATCACAACAATCTCTCTGGAGAAATCCCTCTAGAGATTGGAAACCTTACTTCACTCAACGTCTTCAACTTGCAAAGGAATAGTCTCTCTGGCCACATTCCATCAACAATTCAGCAATGCTCTAAGCTGTATGAGCTAAGGCTCTCGGAGAACTTCCTCTCAGGTATTATACCAGTTGGACTAGGAGCAGTCACTGAGTTGCAAGTCATATTGGACCTCAGTAGAAACCTCTTTTCTGGTGAGATTCCGTCATCTCTGGGAAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTTAACCATCTTCAAGGACAAGTTCCTCCTTCACTTGGTCAACTTACCAGCCTTCATGTGCTAAATCTCTCAAATAACCATCTTCATGGCCTCATTCCATCAACCTTTTCAGGGTTCCCACTAAGCTCTTTTCTGAATAATGACCACTTGTGTGGCCCTCCACTGGCATTATGCTCAGAAGCTACGAGAATGAAGCTGTCAAACTCACAAGTAGCAGCAATCATAGTAGCCATTGTCCTTACTTCAACTCTGATATGCTTAGTATTATTGTATATAATGTTGAGAATCTGGTGCAACTGGAAAAAGGTAGCTGTTTCAAGTGAAGATTGTGGCATGGTTGAGCAGAAGACAAGAAATGGAGAGTACTGGAACATGAATTCCCCTGAGCTGTTTTCTTCACCAGATATACAAATTTCTGCTACACCTTGCATTTGTAATCTCAAAATTGATGCAGCAGCCAGGGAAAATACCTTGGTTAGATAA

Promoter Sequence:
>Vu_09044::LG2:14281680-14283680(-)

TCAAAGTTAAACTTAATAACGACATGCATGATGGTTTTAATAAATAGCAATTTGTATAATTGTACAGTTTCCGAATAAAAAAACCACTCTTTCATGGATTGTTTAAAGCCAAACTTTGAATATGGTATGGACTTGTTTAAAGTAAAACTTCGAATATGGTATTTTGAATGATATTAATTCCTTGTTGGGTATAGAAAAAGAGATAAATATATTATCTTCATATTTTATGTTAAAAGTGATCTCACTAAATTCAAATTTTATTGTTGTTGTATTTGTTCAGTGAATTTCTTCTCAAAGCATTCATCAAATTAATATGTTGAAAACAATGTAAGTATGAGTTTAAATAAAATAGAAATGATAAAAGTAAACCTTAAAACAAGATTTATATATTCATTGTTTCAAAAGATCTAGGATTAAAAATATTGTGAATCCTTTATTTAAATCGAGTTAAAGTATAGTATGTATAAATCTCTCCTTTTAGGAAAAGAAAAAAAGCATGATAGCTCTTACGTGTGGATATGATTGCACTAGTGGTAAACTTTCGCGCGTGTCATGATGAATAACTCACTTTCTGAGATATCATGATGCAGATTTGGAAGCATAACCTGAGAAAACTTGAACCATTTTGTCACTCTTGGCAGACAGTAATGGCCAGCCAGACCAGTGCGCGTGTGTGAAGCCTGAAGATCATCTAGTATTCTCATGTCAATATGGCTTTATACCTGTTTCGTTGACAAATTTTGAAGTTCAATTCACCAAAACTCTTGCAAAGTCAAATCATACTATGTTTCTCTTAGTGAATATTCGATGAATTTGCATAGTGGCAGTGTGAATATAAATTCAGGATCAACAAAAGGTTACAGAAAGTGACCCACTTCTGTCACCTTTTTATCTAAGGGATTAGTGGATATCTTTATTCGCTTATTGCCCTTTAACTCTAACACCAAAAACAACAACAAAAAAACCATCATTACCCTTATCTCTGCATAATTACTTTCAAATTATACCAACTACAAAACAAATATAAGAAACTATAGGAAAAGGTAGTTTCCCTTGCACAACATGAAACTTGCATCTTATAATAAAAAAATGAGTTCAAATTTTATAATTCTTAACAAAACTTTATTGATAAATATTCTTTAATTATTCTCTTCTTTTTATTTTCTTTTTTATCGATACTTGTTAGTTTTTAAAATTTTGTTAGTAAAAAAAATAAACTTACAAATACTTTTACACTTTTGACAACTTAATTCCATAAAACGGTTTACACTCACTTATTAATTTATCTTATCTTTGATCGACGCGAGATTTGTAACACACAGACTACGTGAGGTTTGCATCTATATGTATTTTTTAAATTGACTTTGTTCATAGTTGAGATAATACTTTCAACCATTACTAAGTCACGTTATAATTCTTATAATTCTTGTGAGATTCTCTTAAGCTACGAAGTTTGCTTTGACTTTTTTAAAAACTCTAATATTTTTGAAGAATCTTAAAAGGCTCTTTCTGTTTCTGAGAGTTGGTGAAGAAACACCAGTATTACCAAACCTCTGGTAAAACTGAGAAAAGTAGAAAGGTGTGCTTACCCAATATCCGTTTAAAGCCAAAAGAAAATCTATTATCATCACACTATCCATGTTTGAGAAAAATATTAATAAACAAGAGTATGTGTTTTCTTGTGGTGTTGTCTAAAAATATTAATAAACAAGAGTATGTGAAATTCTTCATTTTCCACGTGTAAGTGCACGATTGTCGTATGACATATTGAGCAGAGTAGCTTCATCGGAACTATTTATAGTCGAATTTTACATCTTAGCACTTGAACTTGTATAATTGTTGTTCATCATTTCTTCCATCACTTCCTAGTTCTTGTATTTATACCCTGCAAAACTTGGCCTTTCTCAGCGTTTTTCTCCATTCCTTTATATGGAATTAGCCCCCCAAAGCATACCCTTTGGACCATTTTATCTGTTGTCTAGTTATTTATCAGGAAGTTC

Gene Sequence:

>Vu_09044(-)