Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_08946 LG2 12759570 12762923 PREDICTED: transcription factor MYB1R1-like isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   catabolic process, response to light stimulus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 12759689 3_prime_UTR_variant
A/C 12759792 3_prime_UTR_variant
G/A 12759925 3_prime_UTR_variant
G/A 12760264 missense_variant p.Ser192Leu
T/A 12760348 missense_variant p.Asp164Val
T/A 12761036 downstream_gene_variant
T/A 12761041 downstream_gene_variant
T/C 12761045 downstream_gene_variant
T/A 12761140 downstream_gene_variant
T/A 12761149 downstream_gene_variant
T/C 12761154 downstream_gene_variant
T/C 12761162 downstream_gene_variant
C/T 12761345 downstream_gene_variant
C/T 12761366 downstream_gene_variant
C/T 12761371 downstream_gene_variant
C/G 12761381 downstream_gene_variant
A/T 12761436 downstream_gene_variant
A/T 12761641 downstream_gene_variant
G/T 12761734 downstream_gene_variant
T/C 12761751 downstream_gene_variant
G/C 12761763 downstream_gene_variant
A/T 12761804 downstream_gene_variant
C/G 12761859 missense_variant p.Asp145His
C/A 12762199 downstream_gene_variant
T/C 12762253 downstream_gene_variant
A/C 12762306 downstream_gene_variant
G/A 12762331 downstream_gene_variant
G/A 12762332 downstream_gene_variant
T/G 12762421 downstream_gene_variant
C/T 12762484 downstream_gene_variant
G/A 12762496 downstream_gene_variant
A/G 12762499 downstream_gene_variant
G/A 12762502 downstream_gene_variant
T/C 12762514 downstream_gene_variant
G/C 12762558 downstream_gene_variant
A/G 12762647 synonymous_variant p.Val57Val
T/C 12762712 missense_variant p.Ser36Gly
T/A 12762724 missense_variant p.Arg32Trp
T/G 12762909 5_prime_UTR_variant
G/T 12762922 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_08946.1
MPLSSASAAAPHSASSAEIMLFGVRVVVDSMRKSVSMNNLSQYDHHRDTAAAKDDAVAAGYASADDAAPNNSGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEGQIQYQDNVSLLHPMYPVTPEGSNMNGFSKLPMYSKDIGTGAMSAQAGNPMKILTLGQGNVEQNGPSTKLVCTTAPNIVPDYKGSTASDITATSLSSLDPPTLSLGLSLSSSQRQTSSIHSAFHSLSCFNNGDSFITVA*


CDS Sequence:
>Vu_08946.1
ATGCCTCTCTCCTCCGCCTCCGCCGCAGCCCCTCACTCTGCCTCCTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTCGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGATCACCATCGCGATACCGCCGCCGCCAAAGATGACGCCGTTGCCGCCGGCTACGCCTCCGCCGATGATGCCGCTCCGAACAACTCCGGGAAAAACCGCGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATAACCACCGATTCGGTCTCTACAACCCCGATGGAAGGACAGATTCAGTATCAAGATAATGTGTCTCTTCTGCATCCCATGTACCCTGTTACCCCTGAAGGAAGCAACATGAACGGATTTTCCAAGTTGCCTATGTATTCGAAGGACATTGGTACTGGAGCTATGTCAGCTCAAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAGCAGAATGGGCCTAGTACTAAGCTAGTTTGTACAACAGCCCCTAATATTGTTCCAGATTATAAAGGCTCCACAGCGTCTGATATCACCGCCACCAGTTTAAGTTCACTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACCTCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAACGGAGATAGCTTCATAACCGTTGCTTAG


Promoter Sequence:
>Vu_08946::LG2:12762923-12764923(-)
TTAAGAAAAAAAATCATGATAGGAGTTTCAGGTTTCAAAGCCAACAATATTTCAGATGGAGTGATTAACTCTAACAATGTTATCTCAATAGACTTGGGATATATACGCGTAAACGTGTGTGTTCTTAGTCATTTACTATTGAAAACTTTTACCTACACTATTTAGTTTTGTGTAAATACAATATAGATGGTTTTAACATATTGACACAGTGAAAGAAATACAAAAATAAAATAAAATAGAAATAGACTTTTATTAAAGAAGGGATAAAAAATACAAAATGCTATTTGCAACACACAACTCAACTCCAGGTGCAAAAATATAAAAGTAGAGAAAAATGACAAAAACTAAACTAACCAAACTAAATCTAACATAACCAGAAGCAAACTAAACACAACTAACAACCAATATAAAACGTTGATAGATGGACCCACAATCACAGAACATAGGTAAGCTATAATATTTAGAAGATTAAATTCATTTTTAAATCACACATTTTAAATATTCACTTGAATCTCAAATAATTTTATCATCTCATCAATTACACATAAGTATCTTTATTGACATTGTTCTACTAGTTTTAGAAGACTTATATGTTGAATTTAACTCATATTCTACACCTATCATGTAAACTTTTGATACATTTTAGAAAAATCACTTAAAATTTATTTTTCCCAATATCTCAAAACCCAAATTATCTTCATATAACAAAGTTAATTTCGTATAATTTTCAAAAAACCGATTCTTTTTCATATCAATTTTTATTTTAAGAATCTTTATCGATTTACACTGTATAAATATATATTTTTTTATGTGAGTTGGAATATTTAGTAAAATCCAAATATCCTAAAAATATTCTTATTTATATAGCTCTCAAACTTACTTATGCACTAGTTTAAGAGAAAAATGTTTTAGTACTGTTCATCTTATAAATAAATATATGAAAGGTCTATTTTTAAAGCTATTGTATAGGTTCAATCTTTTTTTTTCTTGTCTATAACCAGAATTCACAATGAATAATATTTGAAGTTAAAAGCGCCAGGGGAAGATTAGGAAAAACTAAAGAACTCTTACTGAATTAGCATGTGTGATTAAGTTATGCTATTAAAATAAATTAAGAAACCTAGCTCAAAAGATACTGCCACCCGTATAAAAAATGAAGATCGATCATAATGCTATACTGCATATAAAAGCAACGTTGGGCCCAAAACAGAAGATAATATTATTTTATGGTGGCGAAAAGAAAACAAATATATCCATGAAATATTCTGAAAAAAAAGGTTTCCATAAAGAGACAAGATAAAACACAGGATAACAGCAGATAAAACGGACCACCAATTGCCACGTATTAAACACCACACAAAAACTTCTTTTTTCTCATAAACGTTATGTGCTCTAACATAGCAAAAAAAAAGGAATCCCACTCTCCACTCTACACTTTTCAATAAATAAACTATATTCAATTTGTATCTTCTCAATCACTGTAATATAATCATACACTTAAAGTAAAGTATTCCTGAGCAACACAATGTTAATGCTGTATTTTACTAAATTATGCATATTGATAATGAATGAATGAATTTTAAAATAGTTAGCTTAACATGAAACCAAAGATTATTTATAATTAGCTCATATAATCCTTATTAAAGTGGTAAAAACATTAAAAAATAGCCAATTGCATATTAAGAATGGGTCCGCCAGCTAGCTTCACTTAAACTAATATATCTCTTCACTTGTTTTGGGGAAAAAGAAAAGCTAATCTGATCTGTGTCCTTAATCTGATTAATGTGATTAAGAAAAGATAATAATAAAATTATGTATATATATATATATATATATATATATATATATATATATATATATATATATGTACTAAAAAGAATATTTCTCATAATGTTATCATCACAATCAATGATCTAAGCTACAATTTTGAATTATATGCGTATCAAGTACATCACATGATAACTCACATTAAACCTTATTTTAAACATCTCTGTCCCCTC


Gene Sequence:
>Vu_08946(-)
ACCACACCTCTTCTACTCTTTCCTTTCTCTCTCTTATATTAATCACTTCCTCCCTCACACATTCGCTGCAACAACGCCACAGTTCACTTTTCCCTCTCACCGGAAAATGCCTCTCTCCTCCGCCTCCGCCGCAGCCCCTCACTCTGCCTCCTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTCGTGGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGATCACCATCGCGATACCGCCGCCGCCAAAGATGACGCCGTTGCCGCCGGCTACGCCTCCGCCGATGATGCCGCTCCGAACAACTCCGGGAAAAACCGCGACCGCAAGCGAGGTCCGACCAACACCTTCTCGAACTCTCTGACACGCTTTATAATTTATATAAATAAATCAATCAATAAATAAATACTTTATCAACTAGAATTCGTTGTTCACTCCGCCAAAAAAATTAGACGATTTTTCAGACTATACTTAAATGCATGCCTGAGAACTAAGTTGATATGGAATATTAATTTTGATCGGTGAGAGAATCGTATCATATGAGGTATGTTAGTTAATCTAAGTGTTGTATTTTTTTTCCCATTATTTTTAATGTTAGGTTTGTTGTATTATAGAATAGAATATAAATGTTTAAATTCATAATTAAATGTCGATTTTAATTACTGAGATTTAAGTAGTTATTAATGATAGGAGATATTAATTTTAACCGGAGAGAGGATCTATGTTAGTTAATCAAAGTTTTGTATTTATTTTATTGCATGTTGATTGTGGATTTGTTGTGAGATAAGTATGAATATGAATGTGATTATTGATTTGTTGCATTAAGAGAGTGTTGTTGTGGATATTTGGGGGATGATCAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATAACCACCGATTCGGTAAGTTGTGTTCAGGTAAAGTTTGATGTTAATTTTGTACATGAAATTAGGTGCTGAGTCAACGCGTTATTAATCGATCTTGGTGGTGGGATTGAAATTTTAGCGTGCTTTCTTTTGCCGTGTTAGGAAAAACAAAGTATAGAAACCAAAGGAAAGGGGGGAAGAAAAAAAGTTACCTCACTGTTTAGTTTCAGTTGATTTTTTAGATTGGTGGATTATTGTTTTCAAAAATACTTTTATTTTTTTAAATTTTGTTTATCCCTTGGGGTTACTTAGAGTGGCGTGAAACAGTTCCTTGTTTTTCCGTTTTAATATTGCCAGCAATGGGGAGGTTTAGTCTAATTTTCGCACTATTTCGGTTCAAAACTTCGAAATCCAGTGGAAAGATCGGAGCTTCCTTGCATTTGCTTGTAAAAGGGGAAATGGAATAAAAAATGTTTTATGAAACCTAAAGAAACTTGTGTCGTTTGGTTATGTATCTTATCTTTAGTTAATTGATTAATTGATACAGTCCTTTGTTGTTCAAGAGAAACTCCAACGGAACAAAATCACGTGATTTCAGGCTTTATAGCCCAAGAAGCTAACTACTTTGAACTTGGAGAACCGGAGAAAGAAACCTCTGTGTTATTTTAGTACCAATCGTTCAGTTTCCATGGTTTGATACGGGAGGAAGACTTATATATGGATAAGAAAAAAAAAGGAAAAACAGTGCGAGGAAAAAAAGAAAAAAAAATTAAATATAGAAAAGAAAGGGCAGAATAATTTTGTTGGGATGAATTAGTGAAAAGATGGAAAAATTTAAATGAAATTGTTTAGATTGAAAAAAAGGTCATAAATATTAAACCAGAGATTGTATTATTATCGTATCATTTTAGTCTTATAGATTTAAATTAAATTATTTATTATAATTTTTTTTCTCAACTCCATCCAATTCCTCTACTTGTGGTCCTTTATTAGAATATTGAGGTTTTTATTTAATTTTTTTCACACATTTTTTTTTTCTCTTTTTCTCTTAGTTTCATATTCAAATATTTGAATCTTTTATTATTTTGAATATCTTTACCTGAAATTGGTTATAACTGGACATTGCATGAAAGAAATGAAAAAGGCAGAAAAAGTAAAAATCAATGTTATTAAGTATTATATTGTTTTATTTGCTAATTTTCTAATCCTTTCTTCTCGGTTTGGAAAAGAAACAGAGTATCATGATAAAAAATGTTTTCGTTGCAAATTAACATAAACGGAAAAAAGAGAAGAAAAAAACAACAACCGTGTAATCATCACATTTTTAATTTCGTCTGTGCTAAATCAATCAGAACAAACATGGCCTTATTATCCGGTACTTATTGGCTGCTATATCTCAACATGTACTGTGAGATCAATAATTAATTACTGTTTAGGGTATGACAGCAACTTGAGTAATTTGTAATGATCTTATTCAATTTTTGGTCAGGTCTCTACAACCCCGATGGAAGGACAGATTCAGTATCAAGATAATGTGTCTCTTCTGCATCCCATGTACCCTGTTACCCCTGAAGGAAGCAACATGAACGGATTTTCCAAGTTGCCTATGTATTCGAAGGACATTGGTACTGGAGCTATGTCAGCTCAAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAATGTGGAGCAGAATGGGCCTAGTACTAAGCTAGTTTGTACAACAGCCCCTAATATTGTTCCAGATTATAAAGGCTCCACAGCGTCTGATATCACCGCCACCAGTTTAAGTTCACTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACCTCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAACGGAGATAGCTTCATAACCGTTGCTTAGAAAATAACATAGATCTGTTGCCCAATCTAGAGCAGCTTTGGATTCCGAGATTTTTATCTCAAATCTCCTTTCTCTTTTGGTGGGAGAAGGATAAAAGATGTTAAAGGAAAAAGGACGATGAATTAGAGAAGGCAATAAGGTAATAAGTCACCAAATTGATCCTTCTGTTCCTTGTACAGACCCTGGAAAGGTCCTGTCATGGTTTTGTTTATTGTTTATTGGCTCTTTTTTATGTTTGTAGTTACTATAACTGAACATAACGAACTACTTCCTGTTAATTTTTAATGAATATATATCTGGAGACTATACCCAGGAATGATTTCTAGATCTTCTCGGGAGGAATTATATAGATGAATTTTATGATTGTCACTGTACGTC